Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G108840 Populus trichocarpa HOM05D008889 ORTHO05D009956 1.8e-61 239.2 130 100.0
Sabra04G0073700 Salix brachista HOM05D008889 ORTHO05D009956 2.9e-43 178.7 129 81.4
Potri.017G107000 Populus trichocarpa HOM05D008889 ORTHO05D009956 7.3e-39 164.1 131 69.5
Sabra17G0089900 Salix brachista HOM05D008889 ORTHO05D009956 1.4e-34 149.8 134 64.9
Manes.01G105700 Manihot esculenta HOM05D008889 ORTHO05D009956 2.2e-19 99.4 130 50.8
Manes.02G062300 Manihot esculenta HOM05D008889 ORTHO05D009956 6.4e-19 97.8 136 45.6
RcHm_v2.0_Chr2g0164181 Rosa chinensis HOM05D008889 ORTHO05D009956 1.1e-13 80.5 82 54.9
TWI60G1323 Tripterygium wilfordii HOM05D008889 ORTHO05D009956 1.1e-13 80.5 131 41.2
FvH4_6g45950 Fragaria vesca HOM05D008889 ORTHO05D009956 1.8e-13 79.7 82 54.9
FAN02G0304 Fragaria x ananassa HOM05D008889 ORTHO05D009956 1.8e-13 79.7 82 54.9
FAN14G5446 Fragaria x ananassa HOM05D008889 ORTHO05D009956 1.8e-13 79.7 82 54.9
FAN05G4365 Fragaria x ananassa HOM05D008889 ORTHO05D009956 5.3e-13 78.2 82 53.7
FAN09G2052 Fragaria x ananassa HOM05D008889 ORTHO05D009956 9.0e-13 77.4 82 53.7
Duzib133G1477 Durio zibethinus HOM05D008889 ORTHO05D009956 1.5e-12 76.6 134 50.0
Ca_23534_v3 Cicer arietinum L. HOM05D008889 ORTHO05D009956 2.0e-12 76.3 88 55.7
Ciclev10013380m.g Citrus clementina HOM05D008889 ORTHO05D009956 2.6e-12 75.9 125 44.0
Lalb_Chr04g0258271 Lupinus albus HOM05D008889 ORTHO05D009956 2.6e-12 75.9 117 45.3
TPR.G3280 Trifolium pratense HOM05D008889 ORTHO05D009956 1.7e-11 73.2 89 53.9
QL02p063786 Quercus lobata HOM05D009227 ORTHO05D009956 2.2e-11 72.8 90 48.9
Phvul.008G023501 Phaseolus vulgaris HOM05D008889 ORTHO05D009956 2.9e-11 72.4 89 56.2
Glyma.08G254600 Glycine max HOM05D008889 ORTHO05D009956 3.8e-11 72.0 121 47.1
Lj1g0003987 Lotus japonicus HOM05D008889 ORTHO05D009956 3.8e-11 72.0 115 49.6
Thecc.04G112500 Theobroma cacao HOM05D008889 ORTHO05D009956 3.8e-11 72.0 85 54.1
Medtr7g017790 Medicago truncatula HOM05D008889 ORTHO05D009956 6.4e-11 71.2 99 51.5
Gohir.D08G061900 Gossypium hirsutum HOM05D009227 ORTHO05D009956 1.9e-10 69.7 92 48.9
Gohir.A08G052300 Gossypium hirsutum HOM05D008889 ORTHO05D009956 2.4e-10 69.3 92 48.9
Oeu054579.1 Olea europaea HOM05D011353 ORTHO05D009956 2.4e-10 69.3 82 52.4
Lalb_Chr10g0092501 Lupinus albus HOM05D008889 ORTHO05D009956 4.2e-10 68.6 113 45.1
TWI34G1181 Tripterygium wilfordii HOM05D008889 ORTHO05D009956 5.4e-10 68.2 94 46.8
Prupe.3G245600 Prunus persica HOM05D008889 ORTHO05D009956 1.2e-09 67.0 116 40.5
Cc11_g11230 Coffea canephora HOM05D011353 ORTHO05D009956 1.6e-09 66.6 134 38.8
MD17G1069000 Malus domestica HOM05D008889 ORTHO05D009956 1.6e-09 66.6 77 53.2
THA.LOC104805540 Tarenaya hassleriana HOM05D009227 ORTHO05D009956 2.1e-09 66.2 86 45.3
Aqoxy3G03789 Aquilegia oxysepala HOM05D018804 ORTHO05D009802 7.8e-09 64.3 89 49.4
Thecc.03G112200 Theobroma cacao HOM05D008563 ORTHO05D009802 7.8e-09 64.3 97 47.4
CSS0034251 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 1.7e-08 63.2 92 44.6
CSS0042453 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 1.7e-08 63.2 92 44.6
Duzib138G0287 Durio zibethinus HOM05D008889 ORTHO05D009956 1.7e-08 63.2 99 46.5
Duzib084G1352 Durio zibethinus HOM05D008563 ORTHO05D009802 2.3e-08 62.8 98 44.9
CANSAT64G2743 Cannabis sativa HOM05D008889 ORTHO05D009956 3.0e-08 62.4 84 52.4
CAN.G184.15 Capsicum annuum HOM05D011353 ORTHO05D009802 3.0e-08 62.4 84 48.8
Thhalv10005597m.g Eutrema salsugineum HOM05D009227 ORTHO05D009956 6.6e-08 61.2 76 50.0
Sed0012187 Sechium edule HOM05D008563 ORTHO05D009802 6.6e-08 61.2 103 41.7
unitig_27.g25224 Utricularia gibba HOM05D008889 ORTHO05D009956 6.6e-08 61.2 81 53.1
Gorai.004G064000 Gossypium raimondii HOM05D009227 ORTHO05D009956 8.7e-08 60.8 77 50.6
BcaC06g33727 Brassica carinata HOM05D009227 ORTHO05D009956 1.1e-07 60.5 76 48.7
C07p38630 Brassica napus HOM05D009227 ORTHO05D009956 1.1e-07 60.5 76 48.7
BolC7t44384H Brassica oleracea HOM05D009227 ORTHO05D009956 1.1e-07 60.5 76 48.7
Sp2g18210 Schrenkiella parvula HOM05D009227 ORTHO05D009956 1.1e-07 60.5 76 48.7
AL7G51640 Arabidopsis lyrata HOM05D009227 ORTHO05D009956 1.5e-07 60.1 75 46.7
AT5G38790 Arabidopsis thaliana HOM05D009227 ORTHO05D009956 1.5e-07 60.1 76 47.4
BcaC06g30842 Brassica carinata HOM05D009227 ORTHO05D009956 1.5e-07 60.1 76 48.7
A06p39660 Brassica napus HOM05D009227 ORTHO05D009956 1.5e-07 60.1 76 48.7
BraA06t26881Z Brassica rapa HOM05D009227 ORTHO05D009956 1.5e-07 60.1 76 48.7
Oeu024138.1 Olea europaea HOM05D011353 ORTHO05D009956 1.5e-07 60.1 83 48.2
PSO478G2273 Papaver somniferum HOM05D042328 ORTHO05D009956 1.5e-07 60.1 94 43.6
Lsat_1_v5_gn_0_39381 Lactuca sativa HOM05D001719 ORTHO05D008373 1.9e-07 59.7 77 50.6
PSO017G1525 Papaver somniferum HOM05D042328 ORTHO05D009956 2.5e-07 59.3 93 45.2
Oeu048107.1 Olea europaea HOM05D026131 ORTHO05D009956 3.3e-07 58.9 75 49.3
BcaB07g30061 Brassica carinata HOM05D009227 ORTHO05D009956 4.3e-07 58.5 76 48.7
Gorai.008G201100 Gossypium raimondii HOM05D008563 ORTHO05D009802 4.3e-07 58.5 90 47.8
Carub.0009s0002 Capsella rubella HOM05D009227 ORTHO05D009956 5.6e-07 58.2 80 46.2
Gohir.D12G187700 Gossypium hirsutum HOM05D008563 ORTHO05D009802 5.6e-07 58.2 90 47.8
Psat5g232520 Pisum sativum HOM05D008563 ORTHO05D009802 7.3e-07 57.8 80 46.2
TPR.G2004 Trifolium pratense HOM05D008563 ORTHO05D009802 7.3e-07 57.8 84 44.0
CiPaw.04G050600 Carya illinoinensis HOM05D008889 ORTHO05D009956 9.6e-07 57.4 118 40.7
Sopen05g006040 Solanum pennellii HOM05D011353 ORTHO05D009802 9.6e-07 57.4 75 48.0
COL.COLO4_28804 Corchorus olitorius HOM05D008563 ORTHO05D009802 1.3e-06 57.0 94 45.7
Atru.chr11.1516 Acer truncatum HOM05D018013 ORTHO05D013371 2.1e-06 56.2 86 48.8
Medtr2g058870 Medicago truncatula HOM05D008563 ORTHO05D009956 2.1e-06 56.2 102 40.2
Solyc05g010270.1 Solanum lycopersicum HOM05D011353 ORTHO05D009802 2.1e-06 56.2 75 48.0
PGSC0003DMG400025096 Solanum tuberosum HOM05D011353 ORTHO05D009802 2.1e-06 56.2 80 47.5
C02p56090 Brassica napus HOM05D009227 ORTHO05D009956 2.8e-06 55.8 76 48.7
BolC2t11666H Brassica oleracea HOM05D009227 ORTHO05D009956 2.8e-06 55.8 76 48.7
TWI60G1620 Tripterygium wilfordii HOM05D014692 ORTHO05D014734 2.8e-06 55.8 78 48.7
TPR.G15318 Trifolium pratense HOM05D008563 ORTHO05D009802 3.6e-06 55.5 92 41.3
DCAR_011590 Daucus carota HOM05D065511 ORTHO05D009802 4.8e-06 55.1 70 51.4
A02p37090 Brassica napus HOM05D009227 ORTHO05D009956 6.2e-06 54.7 76 48.7
BraA02t08695Z Brassica rapa HOM05D009227 ORTHO05D009956 6.2e-06 54.7 76 48.7
Lj1g0007009 Lotus japonicus HOM05D008563 ORTHO05D009802 6.2e-06 54.7 72 45.8
Peaxi162Scf00188g00068 Petunia axillaris HOM05D011353 ORTHO05D009802 6.2e-06 54.7 92 44.6
unitig_21.g20864 Utricularia gibba HOM05D011353 ORTHO05D009956 6.2e-06 54.7 85 44.7
Aa31LG9G16880 Aethionema arabicum HOM05D009227 ORTHO05D009956 8.1e-06 54.3 77 45.5
CSS0016849 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 8.1e-06 54.3 85 44.7
CARHR264020 Cardamine hirsuta HOM05D009227 ORTHO05D009956 8.1e-06 54.3 78 41.0
SGA_v2.0_scaffold14G06777 Striga asiatica HOM05D011353 ORTHO05D009956 8.1e-06 54.3 93 47.3


User provided reference genes

Program Settings