Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 8.1e-173 610.5 357 100.0
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 1.1e-105 387.5 296 80.4
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 8.5e-98 361.3 352 65.9
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 6.1e-96 355.1 353 62.3
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 8.0e-96 354.8 359 59.1
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 6.8e-95 351.7 367 59.1
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 6.8e-95 351.7 358 61.5
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.2e-93 346.7 350 60.9
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 4.8e-93 345.5 352 65.6
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 1.1e-92 344.4 347 62.5
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 2.4e-92 343.2 345 58.6
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 9.1e-92 341.3 348 63.8
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.3e-90 337.4 349 59.6
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 2.2e-90 336.7 344 63.7
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 2.2e-90 336.7 350 60.0
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 1.2e-88 330.9 341 60.7
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 2.8e-88 329.7 357 63.9
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 3.6e-88 329.3 386 58.3
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 4.7e-88 328.9 350 60.3
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.0e-86 323.6 350 58.0
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.8e-85 319.7 342 57.9
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 8.3e-85 318.2 345 61.2
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.1e-84 317.8 354 57.3
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.8e-84 317.0 350 58.0
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 3.1e-84 316.2 342 58.2
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 5.4e-84 315.5 358 56.1
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 4.5e-83 312.4 344 55.5
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 6.6e-82 308.5 293 64.8
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 1.9e-81 307.0 340 55.9
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 2.5e-81 306.6 342 56.7
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 2.5e-81 306.6 340 53.5
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 4.3e-81 305.8 340 56.2
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 1.6e-80 303.9 348 58.6
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 1.8e-79 300.4 344 54.4
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 6.8e-79 298.5 303 57.8
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 6.8e-79 298.5 340 53.2
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 2.9e-77 293.1 340 58.2
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 1.1e-76 291.2 338 55.6
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 3.2e-76 289.7 353 55.2
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 5.4e-76 288.9 334 54.8
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 4.6e-75 285.8 338 55.9
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 5.9e-75 285.4 348 53.4
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 7.8e-75 285.0 340 55.6
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 1.0e-74 284.6 302 54.0
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 1.3e-74 284.3 363 50.7
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.3e-74 284.3 347 53.9
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 8.6e-74 281.6 354 52.0
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 1.1e-73 281.2 338 55.3
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.1e-73 281.2 346 58.1
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.5e-73 280.8 338 55.0
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 2.5e-73 280.0 511 42.1
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 9.5e-73 278.1 342 50.6
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.0e-71 274.6 348 52.3
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 8.9e-71 271.6 354 52.8
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 8.9e-71 271.6 352 52.0
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 2.0e-70 270.4 344 54.4
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 2.0e-70 270.4 348 52.6
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 9.8e-70 268.1 342 52.0
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 6.4e-69 265.4 355 50.7
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 8.3e-69 265.0 346 50.9
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 1.1e-68 264.6 348 56.6
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 1.1e-68 264.6 347 55.6
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 1.4e-68 264.2 342 50.6
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 4.1e-68 262.7 335 50.7
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 2.7e-67 260.0 334 59.9
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 2.7e-67 260.0 346 51.2
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 4.6e-67 259.2 261 68.6
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 7.8e-67 258.5 344 50.0
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 7.8e-67 258.5 346 50.3
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 1.0e-66 258.1 344 55.8
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 5.6e-65 252.3 354 46.9
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 1.6e-64 250.8 329 49.8
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 1.2e-62 244.6 354 47.2
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 5.8e-62 242.3 347 49.0
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 2.9e-61 240.0 353 46.5
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 3.2e-60 236.5 265 55.5
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 5.4e-60 235.7 333 55.0
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 2.1e-59 233.8 346 45.1
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 2.7e-59 233.4 359 45.7
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 6.0e-59 232.3 342 51.5
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 3.0e-58 229.9 308 47.4
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 3.9e-58 229.6 341 46.9
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 6.6e-58 228.8 342 50.0
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 6.6e-58 228.8 342 44.7
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 1.5e-57 227.6 341 44.3
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 1.9e-57 227.3 327 44.6
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 2.5e-57 226.9 319 48.6
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 3.3e-57 226.5 348 49.7
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 5.6e-57 225.7 319 49.2
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 2.1e-56 223.8 239 55.2
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 4.7e-56 222.6 343 44.0
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 8.1e-56 221.9 320 48.8
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 4.0e-55 219.5 447 38.5
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 4.0e-55 219.5 350 44.6
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 8.9e-55 218.4 321 48.0
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 2.0e-54 217.2 343 42.6
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 3.4e-54 216.5 292 49.7
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 5.8e-54 215.7 340 44.4
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 7.6e-54 215.3 345 46.4
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 1.9e-52 210.7 350 44.6
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 7.1e-52 208.8 354 41.5
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 7.1e-52 208.8 349 41.8
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 3.5e-51 206.5 249 52.6
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 6.6e-50 202.2 346 39.6
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 2.5e-49 200.3 318 43.7
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 3.3e-49 199.9 316 43.0
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 3.3e-49 199.9 337 43.9
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 3.6e-48 196.4 347 39.5
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 3.6e-48 196.4 347 39.5
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 8.1e-48 195.3 341 38.7
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 2.0e-46 190.7 320 44.4
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.9e-44 184.1 254 50.0
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 1.3e-42 177.9 313 39.6
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 8.7e-42 175.3 342 40.9
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 4.3e-41 172.9 346 36.7
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 6.2e-40 169.1 306 38.6
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 2.4e-39 167.2 344 36.9
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 3.1e-39 166.8 346 35.0
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 9.0e-39 165.2 306 37.9
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 2.6e-38 163.7 346 38.4
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 6.4e-37 159.1 335 37.3
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 6.0e-35 152.5 306 36.9
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.3e-34 151.4 292 34.6
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 2.8e-32 143.7 120 65.8
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 3.5e-27 126.7 324 35.8
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 6.0e-27 125.9 302 45.7
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 2.3e-26 124.0 292 32.2
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 6.7e-26 122.5 319 34.8
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 6.2e-24 115.9 134 53.0
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 8.2e-24 115.5 190 38.9
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 8.2e-24 115.5 214 38.3
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.4e-23 114.8 105 60.0
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 7.6e-22 109.0 272 33.1
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 1.1e-20 105.1 274 33.2
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 4.2e-20 103.2 111 56.8
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.5e-19 100.1 100 54.0
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 7.9e-19 99.0 95 61.1
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 5.3e-15 86.3 197 36.0
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 1.2e-14 85.1 77 61.0
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 7.6e-14 82.4 92 53.3
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.7e-13 81.3 95 48.4
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 1.1e-07 62.0 46 63.0
RcHm_v2.0_Chr4g0401411 Rosa chinensis HOM05D034610 ORTHO05D006058 4.5e-06 56.6 75 50.7


User provided reference genes

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