Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.7e-39 165.6 89 100.0
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 3.0e-12 75.1 75 57.3
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 8.9e-12 73.6 75 60.0
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 2.0e-11 72.4 74 55.4
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.6e-11 72.0 75 56.0
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.4e-11 71.6 75 53.3
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 3.4e-11 71.6 75 53.3
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 4.4e-11 71.2 73 54.8
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.4e-11 71.2 74 54.1
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.4e-11 71.2 74 54.1
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 7.5e-11 70.5 75 50.7
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.3e-10 69.7 77 54.5
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.7e-10 69.3 75 53.3
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.7e-10 69.3 40 80.0
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 3.7e-10 68.2 73 52.1
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 3.7e-10 68.2 40 80.0
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 3.7e-10 68.2 39 84.6
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 4.9e-10 67.8 75 48.0
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 6.3e-10 67.4 76 52.6
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 6.3e-10 67.4 76 52.6
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 6.3e-10 67.4 40 77.5
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 8.3e-10 67.0 75 52.0
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 1.1e-09 66.6 41 82.9
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.4e-09 66.2 75 50.7
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.4e-09 66.2 75 50.7
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.4e-09 66.2 75 52.0
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 1.4e-09 66.2 60 55.0
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.8e-09 65.9 74 55.4
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 1.8e-09 65.9 75 52.0
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 2.4e-09 65.5 72 50.0
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 2.4e-09 65.5 40 75.0
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 3.1e-09 65.1 73 49.3
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 4.1e-09 64.7 73 49.3
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 4.1e-09 64.7 73 49.3
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 5.4e-09 64.3 41 78.0
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 5.4e-09 64.3 61 57.4
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 7.0e-09 63.9 40 70.0
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 7.0e-09 63.9 41 75.6
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 7.0e-09 63.9 75 46.7
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 9.2e-09 63.5 40 75.0
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 9.2e-09 63.5 40 70.0
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 9.2e-09 63.5 40 72.5
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 9.2e-09 63.5 75 49.3
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 1.2e-08 63.2 40 70.0
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 1.2e-08 63.2 39 74.4
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.6e-08 62.8 40 70.0
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.0e-08 62.4 41 75.6
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 2.0e-08 62.4 72 51.4
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 2.0e-08 62.4 40 70.0
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.0e-08 62.4 40 72.5
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.7e-08 62.0 40 70.0
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 2.7e-08 62.0 40 70.0
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.7e-08 62.0 40 70.0
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 2.7e-08 62.0 40 70.0
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 3.5e-08 61.6 40 70.0
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 5.9e-08 60.8 40 67.5
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 5.9e-08 60.8 41 73.2
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 5.9e-08 60.8 37 75.7
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 1.0e-07 60.1 41 70.7
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 1.7e-07 59.3 40 65.0
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.7e-07 59.3 75 46.7
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.9e-07 58.5 69 50.7
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 5.0e-07 57.8 40 65.0
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 8.6e-07 57.0 40 62.5
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 1.1e-06 56.6 40 60.0
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 1.1e-06 56.6 40 60.0
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.9e-06 55.8 66 51.5
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 1.9e-06 55.8 40 60.0
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 3.3e-06 55.1 74 44.6
Ah.10g037380 Amaranthus hybridus HOM05D001568 ORTHO05D004404 4.3e-06 54.7 39 66.7
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 9.5e-06 53.5 73 45.2
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 9.5e-06 53.5 39 59.0
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 9.5e-06 53.5 39 59.0


User provided reference genes

Program Settings