Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G103400 Populus trichocarpa HOM05D006952 ORTHO05D008687 2.4e-62 241.9 113 100.0
Potri.006G096200 Populus trichocarpa HOM05D006952 ORTHO05D008687 1.8e-57 225.7 113 93.8
Potri.016G110900 Populus trichocarpa HOM05D006952 ORTHO05D008687 5.3e-54 214.2 113 88.5
Duzib128G2003 Durio zibethinus HOM05D006952 ORTHO05D008687 1.9e-51 205.7 113 84.1
Duzib093G2046 Durio zibethinus HOM05D006952 ORTHO05D008687 9.4e-51 203.4 113 83.2
Nn2g11358 Nelumbo nucifera HOM05D006952 ORTHO05D008687 1.6e-50 202.6 113 80.5
Thecc.05G022400 Theobroma cacao HOM05D006952 ORTHO05D008687 2.7e-50 201.8 113 82.3
arahy.Tifrunner.gnm1.ann1.EMW6YX Arachis hypogaea HOM05D006952 ORTHO05D008687 6.1e-50 200.7 112 82.1
arahy.Tifrunner.gnm1.ann1.ES8MJM Arachis hypogaea HOM05D006952 ORTHO05D008687 6.1e-50 200.7 113 82.3
TWI77G0025 Tripterygium wilfordii HOM05D006952 ORTHO05D008687 8.0e-50 200.3 113 81.4
Gohir.D09G158700 Gossypium hirsutum HOM05D006952 ORTHO05D008687 1.0e-49 199.9 113 80.5
Gorai.006G180400 Gossypium raimondii HOM05D006952 ORTHO05D008687 1.0e-49 199.9 113 80.5
Gohir.A09G163200 Gossypium hirsutum HOM05D006952 ORTHO05D008687 1.4e-49 199.5 113 80.5
TAR636G2834 Trochodendron aralioides HOM05D006952 ORTHO05D008687 2.3e-49 198.7 113 79.6
Atru.chr8.2194 Acer truncatum HOM05D006952 ORTHO05D008687 3.0e-49 198.4 113 77.9
Lalb_Chr03g0042961 Lupinus albus HOM05D006952 ORTHO05D008687 5.2e-49 197.6 113 81.4
TPR.G1575 Trifolium pratense HOM05D006952 ORTHO05D008687 1.2e-48 196.4 113 81.4
Cfa017257 Carpinus fangiana HOM05D006952 ORTHO05D008687 1.5e-48 196.1 113 80.5
Haze_20948 Corylus avellana HOM05D006952 ORTHO05D008687 1.5e-48 196.1 113 80.5
Migut.J00227 Erythranthe guttata HOM05D006952 ORTHO05D008687 2.0e-48 195.7 113 76.1
Phvul.008G108100 Phaseolus vulgaris HOM05D006952 ORTHO05D008687 2.0e-48 195.7 113 80.5
Prupe.6G270600 Prunus persica HOM05D006952 ORTHO05D008687 2.0e-48 195.7 113 78.8
VMungo1383G2957 Vigna mungo HOM05D006952 ORTHO05D008687 3.3e-48 194.9 113 80.5
Glyma.07G144600 Glycine max HOM05D006952 ORTHO05D008687 4.4e-48 194.5 113 81.4
MBI14_g32939_MAGBIO Magnolia biondii HOM05D006952 ORTHO05D008687 4.4e-48 194.5 113 77.9
Hma1.2p1_0763F.1_g214620 Hydrangea macrophylla HOM05D006952 ORTHO05D008687 5.7e-48 194.1 113 78.8
DCAR_024036 Daucus carota HOM05D006952 ORTHO05D008687 7.5e-48 193.7 113 77.0
DCAR_024037 Daucus carota HOM05D006952 ORTHO05D008687 7.5e-48 193.7 113 77.0
MELO3C009193.2 Cucumis melo HOM05D006952 ORTHO05D008687 9.7e-48 193.4 113 77.9
Manes.09G102000 Manihot esculenta HOM05D006952 ORTHO05D008687 9.7e-48 193.4 113 82.3
Medtr7g066800 Medicago truncatula HOM05D006952 ORTHO05D008687 9.7e-48 193.4 113 78.8
Nn2g13603 Nelumbo nucifera HOM05D006952 ORTHO05D008687 9.7e-48 193.4 110 76.4
Lalb_Chr19g0124771 Lupinus albus HOM05D006952 ORTHO05D008687 1.3e-47 193.0 113 79.6
Sed0014444 Sechium edule HOM05D006952 ORTHO05D008687 1.3e-47 193.0 113 77.0
Cc06_g01680 Coffea canephora HOM05D006952 ORTHO05D008687 2.2e-47 192.2 113 76.1
Glyma.18G196300 Glycine max HOM05D006952 ORTHO05D008687 2.2e-47 192.2 113 79.6
PGR031G1789 Punica granatum HOM05D006952 ORTHO05D008687 2.8e-47 191.8 113 77.9
SalBow5G3631 Salvia bowleyana HOM05D006952 ORTHO05D008687 2.8e-47 191.8 113 77.0
Aqoxy1G00719 Aquilegia oxysepala HOM05D006952 ORTHO05D008687 3.7e-47 191.4 110 74.5
Cpa.g.sc56.113 Carica papaya HOM05D006952 ORTHO05D008687 3.7e-47 191.4 110 80.0
CsaV3_3G034170 Cucumis sativus L. HOM05D006952 ORTHO05D008687 3.7e-47 191.4 113 77.0
MSTRG.19031 Avicennia marina HOM05D006952 ORTHO05D008687 4.8e-47 191.0 113 77.9
CiPaw.10G154300 Carya illinoinensis HOM05D006952 ORTHO05D008687 4.8e-47 191.0 113 77.0
CANSAT35G1060 Cannabis sativa HOM05D006952 ORTHO05D008687 1.4e-46 189.5 113 74.3
Ciclev10013166m.g Citrus clementina HOM05D006952 ORTHO05D008687 1.8e-46 189.1 113 78.8
MSTRG.5599 Avicennia marina HOM05D006952 ORTHO05D008687 3.1e-46 188.3 113 75.2
Sopen09g007000 Solanum pennellii HOM05D006952 ORTHO05D008687 4.1e-46 188.0 113 74.3
CiPaw.09G205900 Carya illinoinensis HOM05D006952 ORTHO05D008687 5.3e-46 187.6 113 73.5
Eucgr.B02782 Eucalyptus grandis HOM05D006952 ORTHO05D008687 5.3e-46 187.6 113 76.1
PGSC0003DMG400020322 Solanum tuberosum HOM05D006952 ORTHO05D008687 5.3e-46 187.6 113 74.3
Manes.08G087500 Manihot esculenta HOM05D006952 ORTHO05D008687 7.0e-46 187.2 113 77.9
THA.LOC104816220 Tarenaya hassleriana HOM05D006952 ORTHO05D008687 1.2e-45 186.4 108 75.9
Duzib106G1795 Durio zibethinus HOM05D006952 ORTHO05D008687 1.6e-45 186.0 113 76.1
CAN.G355.18 Capsicum annuum HOM05D006952 ORTHO05D008687 2.0e-45 185.7 113 73.5
RcHm_v2.0_Chr3g0463891 Rosa chinensis HOM05D006952 ORTHO05D008687 2.0e-45 185.7 108 76.9
Oeu015014.1 Olea europaea HOM05D006952 ORTHO05D008687 2.7e-45 185.3 113 78.8
Sed0025859 Sechium edule HOM05D006952 ORTHO05D008687 4.5e-45 184.5 109 75.2
ATR0618G178 Amborella trichopoda HOM05D006952 ORTHO05D008687 1.0e-44 183.3 113 73.5
Psat0s1978g0040 Pisum sativum HOM05D006952 ORTHO05D008687 1.0e-44 183.3 113 75.2
TWI74G1053 Tripterygium wilfordii HOM05D006952 ORTHO05D008687 1.7e-44 182.6 113 76.1
Actinidia05346 Actinidia chinensis HOM05D006952 ORTHO05D008687 2.9e-44 181.8 103 79.6
Sp3g07540 Schrenkiella parvula HOM05D006952 ORTHO05D008687 3.8e-44 181.4 110 73.6
BcaC09g48053 Brassica carinata HOM05D006952 ORTHO05D008687 5.0e-44 181.0 110 74.5
BraA01t04315Z Brassica rapa HOM05D006952 ORTHO05D008687 8.5e-44 180.3 110 74.5
PSO339G3931 Papaver somniferum HOM05D006952 ORTHO05D008687 8.5e-44 180.3 113 69.9
AL3G20160 Arabidopsis lyrata HOM05D006952 ORTHO05D008687 1.1e-43 179.9 110 71.8
BcaC09g48008 Brassica carinata HOM05D006952 ORTHO05D008687 1.1e-43 179.9 110 73.6
Hma1.2p1_0244F.1_g101210 Hydrangea macrophylla HOM05D006952 ORTHO05D008687 1.1e-43 179.9 108 75.0
PSO384G3323 Papaver somniferum HOM05D006952 ORTHO05D008687 1.1e-43 179.9 113 69.0
FAN09G1020 Fragaria x ananassa HOM05D006952 ORTHO05D008687 1.5e-43 179.5 105 76.2
Oeu030529.1 Olea europaea HOM05D006952 ORTHO05D008687 1.5e-43 179.5 110 77.3
TAR369G0842 Trochodendron aralioides HOM05D006952 ORTHO05D008687 1.5e-43 179.5 110 75.5
BolC1t05474H Brassica oleracea HOM05D006952 ORTHO05D008687 1.9e-43 179.1 110 74.5
Carub.0003s0825 Capsella rubella HOM05D006952 ORTHO05D008687 2.5e-43 178.7 110 71.8
SMO116G0119 Selaginella moellendorffii HOM05D006952 ORTHO05D008687 2.5e-43 178.7 113 69.9
Thhalv10021991m.g Eutrema salsugineum HOM05D006952 ORTHO05D008687 4.2e-43 177.9 110 71.8
CARHR083460 Cardamine hirsuta HOM05D006952 ORTHO05D008687 5.5e-43 177.6 110 70.9
AT3G09085 Arabidopsis thaliana HOM05D006952 ORTHO05D008687 7.2e-43 177.2 110 71.8
Solyc09g013140.3 Solanum lycopersicum HOM05D006952 ORTHO05D008687 7.2e-43 177.2 108 73.1
Ah.15g089870 Amaranthus hybridus HOM05D006952 ORTHO05D008687 2.1e-42 175.6 113 70.8
HanXRQChr13g0406321 Helianthus annuus HOM05D006952 ORTHO05D008687 2.7e-42 175.3 112 72.3
Lj3g0025387 Lotus japonicus HOM05D006952 ORTHO05D008687 2.3e-41 172.2 113 72.6
MD04G1146800 Malus domestica HOM05D006952 ORTHO05D008687 4.0e-41 171.4 108 73.1
HanXRQChr13g0406361 Helianthus annuus HOM05D006952 ORTHO05D008687 2.0e-40 169.1 103 73.8
DCAR_008639 Daucus carota HOM05D006952 ORTHO05D008687 2.6e-40 168.7 113 69.0
HPP92_012624 Vanilla planifolia HOM05D006952 ORTHO05D008687 2.6e-40 168.7 108 70.4
HanXRQChr13g0406351 Helianthus annuus HOM05D006952 ORTHO05D008687 4.4e-40 167.9 104 72.1
Phvul.010G008400 Phaseolus vulgaris HOM05D006952 ORTHO05D008687 3.7e-39 164.9 113 69.0
AagrBONN_evm.TU.Sc2ySwM_228.2345 Anthoceros agrestis HOM05D001533 ORTHO05D003743 8.3e-39 163.7 110 66.4
Lsat_1_v5_gn_5_155300 Lactuca sativa HOM05D006952 ORTHO05D008687 1.1e-38 163.3 102 70.6
Pp3c15_15480 Physcomitrium patens HOM05D006952 ORTHO05D008687 1.1e-38 163.3 110 64.5
Glyma.01G111500 Glycine max HOM05D006952 ORTHO05D008687 1.8e-38 162.5 113 68.1
Glyma.03G077100 Glycine max HOM05D006952 ORTHO05D008687 1.8e-38 162.5 113 67.3
Pp3c9_14060 Physcomitrium patens HOM05D006952 ORTHO05D008687 4.1e-38 161.4 110 63.6
Rhsim04G0165900 Rhododendron simsii HOM05D006952 ORTHO05D008687 3.5e-37 158.3 105 68.6
Sabra06G0073900 Salix brachista HOM05D006952 ORTHO05D008687 7.7e-37 157.1 113 73.5
TPR.G6676 Trifolium pratense HOM05D006952 ORTHO05D008687 3.8e-36 154.8 113 61.1
TPR.G5256 Trifolium pratense HOM05D006952 ORTHO05D008687 1.9e-35 152.5 113 60.2
HanXRQChr13g0406341 Helianthus annuus HOM05D006952 ORTHO05D008687 3.2e-35 151.8 106 62.3
Lsat_1_v5_gn_5_155361 Lactuca sativa HOM05D006952 ORTHO05D008687 9.5e-35 150.2 108 61.1
Medtr4g014970 Medicago truncatula HOM05D006952 ORTHO05D008687 9.5e-35 150.2 110 60.9
Os03g0265800 Oryza sativa ssp. japonica HOM05D006952 ORTHO05D008687 2.6e-32 142.1 104 62.5
Zm00001eb011810 Zea mays HOM05D006952 ORTHO05D008687 4.4e-32 141.4 104 62.5
Cc02_g31680 Coffea canephora HOM05D006952 ORTHO05D008687 4.9e-31 137.9 100 68.0
Cc07_g20110 Coffea canephora HOM05D006952 ORTHO05D008687 1.1e-30 136.7 115 64.3
CSS0036371 Camellia sinensis var. sinensis HOM05D006952 ORTHO05D008687 1.6e-29 132.9 105 59.0
Mapoly0072s0073 Marchantia polymorpha HOM05D006952 ORTHO05D008687 5.2e-25 117.9 107 52.3
SEGI_04409 Sequoiadendron giganteum HOM05D006952 ORTHO05D008687 7.5e-24 114.0 110 50.9
Nitab4.5_0011723g0010 Nicotiana tabacum HOM05D006952 ORTHO05D008687 3.7e-23 111.7 105 53.3
Psat0s1978g0160 Pisum sativum HOM05D006607 ORTHO05D008166 8.3e-23 110.5 93 60.2
GSVIVG01034013001 Vitis vinifera HOM05D006952 ORTHO05D008687 3.5e-21 105.1 52 88.5
Cre03.g188900 Chlamydomonas reinhardtii HOM05D006952 ORTHO05D008687 5.0e-12 74.7 93 43.0
RcHm_v2.0_Chr4g0412041 Rosa chinensis HOM05D006952 ORTHO05D008687 8.1e-10 67.4 41 68.3
TAR731G0001 Trochodendron aralioides HOM05D000320 ORTHO05D000532 1.2e-08 63.5 37 73.0
SEGI_08039 Sequoiadendron giganteum HOM05D006952 ORTHO05D008687 2.2e-07 59.3 71 43.7


User provided reference genes

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