Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G102800 Populus trichocarpa HOM05D004089 ORTHO05D004687 9.3e-165 583.6 314 100.0
Sabra04G0077800 Salix brachista HOM05D004089 ORTHO05D004687 5.9e-135 484.6 310 84.2
Manes.01G100800 Manihot esculenta HOM05D004089 ORTHO05D004687 3.0e-62 243.0 311 52.1
Manes.02G049400 Manihot esculenta HOM05D004089 ORTHO05D004687 3.9e-62 242.7 309 51.5
Thecc.04G088100 Theobroma cacao HOM05D004089 ORTHO05D004687 1.3e-52 211.1 288 49.0
CiPaw.03G021500 Carya illinoinensis HOM05D004089 ORTHO05D004687 1.6e-52 210.7 298 48.0
Duzib264G0571 Durio zibethinus HOM05D004089 ORTHO05D004687 2.8e-52 209.9 289 49.1
Haze_14490 Corylus avellana HOM05D004089 ORTHO05D004687 2.6e-50 203.4 297 47.8
QL02p084965 Quercus lobata HOM05D004089 ORTHO05D004687 2.2e-49 200.3 311 45.0
TAR629G0233 Trochodendron aralioides HOM05D004089 ORTHO05D004687 1.4e-48 197.6 332 43.7
Dinv11500 Davidia involucrata HOM05D001066 ORTHO05D000891 1.2e-47 194.5 279 46.2
Duzib205G1783 Durio zibethinus HOM05D004089 ORTHO05D004687 6.0e-47 192.2 290 44.8
Thecc.03G094700 Theobroma cacao HOM05D004089 ORTHO05D004687 7.9e-47 191.8 291 45.0
QL10p017912 Quercus lobata HOM05D004089 ORTHO05D004687 1.5e-45 187.6 316 42.1
GSVIVG01011469001 Vitis vinifera HOM05D004089 ORTHO05D004687 7.4e-45 185.3 307 45.0
Duzib068G1131 Durio zibethinus HOM05D004089 ORTHO05D004687 3.7e-44 183.0 291 42.6
CSS0014968 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 6.2e-44 182.2 292 43.2
MBI19_g43436_MAGBIO Magnolia biondii HOM05D004089 ORTHO05D004687 6.2e-44 182.2 296 42.2
CiPaw.12G011700 Carya illinoinensis HOM05D004089 ORTHO05D004687 8.1e-44 181.8 328 39.9
COL.COLO4_00682 Corchorus olitorius HOM05D004089 ORTHO05D004687 1.4e-43 181.0 316 42.4
Glyma.06G196700 Glycine max HOM05D004089 ORTHO05D004687 1.8e-43 180.6 300 42.0
Glyma.17G102700 Glycine max HOM05D004089 ORTHO05D004687 1.8e-43 180.6 302 41.1
Phvul.003G187900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 3.1e-43 179.9 292 41.4
Medtr4g109020 Medicago truncatula HOM05D004089 ORTHO05D004687 4.0e-43 179.5 293 42.0
Phvul.009G184900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 6.9e-43 178.7 319 41.4
CSS0037629 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 2.0e-42 177.2 290 44.1
Prupe.5G198800 Prunus persica HOM05D004089 ORTHO05D004687 2.6e-42 176.8 309 42.4
Glyma.05G024600 Glycine max HOM05D004089 ORTHO05D004687 3.4e-42 176.4 291 40.9
TPR.G2017 Trifolium pratense HOM05D004089 ORTHO05D004687 1.0e-41 174.9 293 40.6
CSS0014802 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 1.7e-41 174.1 300 43.0
PSO478G2558 Papaver somniferum HOM05D004089 ORTHO05D004687 2.2e-41 173.7 318 40.3
VMungo1215G0778 Vigna mungo HOM05D004089 ORTHO05D004687 2.9e-41 173.3 292 40.1
FAN08G0374 Fragaria x ananassa HOM05D004089 ORTHO05D004687 6.5e-41 172.2 293 40.3
FvH4_5g14500 Fragaria vesca HOM05D004089 ORTHO05D004687 8.4e-41 171.8 293 39.9
FAN18G2014 Fragaria x ananassa HOM05D004089 ORTHO05D004687 8.4e-41 171.8 293 39.9
Lj4g0011676 Lotus japonicus HOM05D004089 ORTHO05D004687 8.4e-41 171.8 328 36.6
Glyma.04G165800 Glycine max HOM05D004089 ORTHO05D004687 1.1e-40 171.4 300 40.3
PSO017G6425 Papaver somniferum HOM05D004089 ORTHO05D004687 1.1e-40 171.4 327 39.8
ClCG04G012070 Citrullus lanatus HOM05D004089 ORTHO05D004687 1.4e-40 171.0 318 40.6
FAN13G1369 Fragaria x ananassa HOM05D004089 ORTHO05D004687 1.4e-40 171.0 293 39.9
Ciclev10020945m.g Citrus clementina HOM05D004089 ORTHO05D004687 1.9e-40 170.6 297 42.8
Cfa019278 Carpinus fangiana HOM05D004089 ORTHO05D004687 3.2e-40 169.9 294 40.8
Aqoxy3G03505 Aquilegia oxysepala HOM05D004089 ORTHO05D004687 5.5e-40 169.1 292 40.8
VMungo1309G2967 Vigna mungo HOM05D004089 ORTHO05D004687 5.5e-40 169.1 301 39.5
Dinv10661 Davidia involucrata HOM05D004089 ORTHO05D004687 9.3e-40 168.3 310 39.7
Medtr3g037110 Medicago truncatula HOM05D004089 ORTHO05D004687 9.3e-40 168.3 317 37.9
RcHm_v2.0_Chr7g0182161 Rosa chinensis HOM05D004089 ORTHO05D004687 9.3e-40 168.3 296 40.2
Atru.chr9.325 Acer truncatum HOM05D004089 ORTHO05D004687 1.2e-39 167.9 302 39.1
CsaV3_1G005700 Cucumis sativus L. HOM05D004089 ORTHO05D004687 1.6e-39 167.5 315 39.7
Haze_07654 Corylus avellana HOM05D004089 ORTHO05D004687 2.1e-39 167.2 294 40.1
MELO3C002001.2 Cucumis melo HOM05D004089 ORTHO05D004687 3.5e-39 166.4 315 40.3
Atru.chr8.335 Acer truncatum HOM05D004089 ORTHO05D004687 4.6e-39 166.0 277 42.6
MD14G1205500 Malus domestica HOM05D004089 ORTHO05D004687 1.0e-38 164.9 302 40.7
Psat4g049120 Pisum sativum HOM05D004089 ORTHO05D004687 1.0e-38 164.9 292 39.4
Lsat_1_v5_gn_4_109001 Lactuca sativa HOM05D004089 ORTHO05D004687 1.8e-38 164.1 290 43.1
Nn3g17343 Nelumbo nucifera HOM05D004089 ORTHO05D004687 2.3e-38 163.7 291 42.3
arahy.Tifrunner.gnm1.ann1.JX1FK0 Arachis hypogaea HOM05D004089 ORTHO05D004687 3.0e-38 163.3 296 38.9
PGR044G2522 Punica granatum HOM05D004089 ORTHO05D004687 3.9e-38 162.9 295 42.0
Gohir.D07G074900 Gossypium hirsutum HOM05D004089 ORTHO05D004687 8.7e-38 161.8 299 41.8
MD06G1197900 Malus domestica HOM05D004089 ORTHO05D004687 8.7e-38 161.8 317 38.8
Gohir.A07G070400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.1e-37 161.4 299 41.5
TWI15G0089 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 1.5e-37 161.0 301 36.5
Gorai.001G079000 Gossypium raimondii HOM05D004089 ORTHO05D004687 1.9e-37 160.6 299 41.5
TWI60G1703 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 1.9e-37 160.6 304 36.2
MSTRG.4442 Avicennia marina HOM05D004089 ORTHO05D004687 4.3e-37 159.5 294 39.5
PSO063G0630 Papaver somniferum HOM05D004089 ORTHO05D004687 9.6e-37 158.3 300 39.0
TWI81G0628 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 9.6e-37 158.3 303 36.3
Manes.14G082100 Manihot esculenta HOM05D004089 ORTHO05D004687 2.8e-36 156.8 292 39.0
Potri.015G060900 Populus trichocarpa HOM05D004089 ORTHO05D004687 2.8e-36 156.8 292 40.1
Sed0015191 Sechium edule HOM05D004089 ORTHO05D004687 3.7e-36 156.4 295 36.3
Manes.06G089200 Manihot esculenta HOM05D004089 ORTHO05D004687 8.2e-36 155.2 296 40.5
TAR371G1138 Trochodendron aralioides HOM05D004089 ORTHO05D004687 1.1e-35 154.8 272 42.6
Ca_21804_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 3.1e-35 153.3 293 39.6
MSTRG.11370 Avicennia marina HOM05D004089 ORTHO05D004687 4.1e-35 152.9 294 38.4
Peaxi162Scf00274g10024 Petunia axillaris HOM05D004089 ORTHO05D004687 9.0e-35 151.8 294 36.1
Sed0010910 Sechium edule HOM05D004089 ORTHO05D004687 9.0e-35 151.8 294 37.8
Lj1g0017851 Lotus japonicus HOM05D004089 ORTHO05D004687 1.2e-34 151.4 292 37.7
Rhsim08G0151100 Rhododendron simsii HOM05D004089 ORTHO05D004687 1.2e-34 151.4 293 38.2
HanXRQChr09g0270961 Helianthus annuus HOM05D004089 ORTHO05D004687 1.5e-34 151.0 290 39.3
Cc04_g14350 Coffea canephora HOM05D004089 ORTHO05D004687 2.0e-34 150.6 296 38.5
Gorai.007G038500 Gossypium raimondii HOM05D004089 ORTHO05D004687 3.4e-34 149.8 294 36.7
Hma1.2p1_0060F.1_g033460 Hydrangea macrophylla HOM05D004089 ORTHO05D004687 4.5e-34 149.4 291 37.1
Oeu046997.1 Olea europaea HOM05D004089 ORTHO05D004687 4.5e-34 149.4 314 39.5
Gohir.A11G032400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 5.9e-34 149.1 294 36.4
Sed0006516 Sechium edule HOM05D004089 ORTHO05D004687 7.6e-34 148.7 289 36.0
EL10Ac5g11067 Beta vulgaris HOM05D004089 ORTHO05D004687 1.0e-33 148.3 304 38.8
Gohir.D11G035700 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.0e-33 148.3 294 37.1
ClCG06G015980 Citrullus lanatus HOM05D004089 ORTHO05D004687 2.2e-33 147.1 310 35.2
Eucgr.B00548 Eucalyptus grandis HOM05D004089 ORTHO05D004687 2.2e-33 147.1 299 35.8
Psat5g199240 Pisum sativum HOM05D004089 ORTHO05D004687 6.5e-33 145.6 292 37.0
Sopen06g026980 Solanum pennellii HOM05D004089 ORTHO05D004687 1.1e-32 144.8 296 36.5
CsaV3_1G002580 Cucumis sativus L. HOM05D004089 ORTHO05D004687 1.4e-32 144.4 304 34.9
DCAR_021516 Daucus carota HOM05D004089 ORTHO05D004687 1.4e-32 144.4 316 36.1
Lj5P107T92 Lonicera japonica HOM05D004089 ORTHO05D004687 1.9e-32 144.1 324 37.3
DCAR_026035 Daucus carota HOM05D004089 ORTHO05D004687 5.5e-32 142.5 284 39.8
HanXRQChr16g0502591 Helianthus annuus HOM05D004089 ORTHO05D004687 5.5e-32 142.5 288 36.5
Sabra15G0086100 Salix brachista HOM05D004089 ORTHO05D004687 5.5e-32 142.5 297 37.7
MELO3C017194.2 Cucumis melo HOM05D004089 ORTHO05D004687 7.2e-32 142.1 305 34.1
Oeu047272.1 Olea europaea HOM05D004089 ORTHO05D004687 9.3e-32 141.7 314 36.0
CiPaw.11G047700 Carya illinoinensis HOM05D004089 ORTHO05D004687 1.6e-31 141.0 249 41.0
Duzib147G1274 Durio zibethinus HOM05D004089 ORTHO05D004687 1.6e-31 141.0 212 48.6
Solyc06g069680.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 1.6e-31 141.0 296 36.1
AT5G61340 Arabidopsis thaliana HOM05D004089 ORTHO05D004687 2.1e-31 140.6 330 34.5
Sopen03g034670 Solanum pennellii HOM05D004089 ORTHO05D004687 3.6e-31 139.8 292 35.3
Gorai.008G195500 Gossypium raimondii HOM05D004089 ORTHO05D004687 6.1e-31 139.0 318 37.4
THA.LOC104801435 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 6.1e-31 139.0 325 35.4
Gohir.D12G182200 Gossypium hirsutum HOM05D004089 ORTHO05D004687 7.9e-31 138.7 317 37.5
PGSC0003DMG400024664 Solanum tuberosum HOM05D004089 ORTHO05D004687 7.9e-31 138.7 292 34.6
AL8G38000 Arabidopsis lyrata HOM05D004089 ORTHO05D004687 3.0e-30 136.7 329 33.7
CARHR275100 Cardamine hirsuta HOM05D004089 ORTHO05D004687 5.1e-30 136.0 304 36.8
Solyc03g115690.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 1.9e-29 134.0 292 34.2
DCAR_016583 Daucus carota HOM05D004089 ORTHO05D004687 3.3e-29 133.3 294 40.1
HanXRQChr04g0107211 Helianthus annuus HOM05D004089 ORTHO05D004687 3.3e-29 133.3 292 36.0
C09p08150 Brassica napus HOM05D004089 ORTHO05D004687 5.7e-29 132.5 318 34.3
unitig_26.g9653 Utricularia gibba HOM05D004089 ORTHO05D004687 7.4e-29 132.1 291 35.7
Carub.0008s2201 Capsella rubella HOM05D004089 ORTHO05D004687 1.3e-28 131.3 310 34.2
BcaB04g19907 Brassica carinata HOM05D004089 ORTHO05D004687 1.6e-28 131.0 311 35.7
PGR083G0705 Punica granatum HOM05D004089 ORTHO05D004687 3.7e-28 129.8 295 33.2
Oeu052462.1 Olea europaea HOM05D004089 ORTHO05D004687 4.8e-28 129.4 310 36.5
A03p46950 Brassica napus HOM05D004089 ORTHO05D004687 1.4e-27 127.9 301 35.9
A09p07290 Brassica napus HOM05D004089 ORTHO05D004687 1.4e-27 127.9 290 35.2
Lsat_1_v5_gn_1_13901 Lactuca sativa HOM05D004089 ORTHO05D004687 1.4e-27 127.9 313 34.2
Sp2g24550 Schrenkiella parvula HOM05D004089 ORTHO05D004687 2.4e-27 127.1 329 34.3
BolC7t45022H Brassica oleracea HOM05D004089 ORTHO05D004687 4.1e-27 126.3 301 35.5
Eucgr.K02492 Eucalyptus grandis HOM05D004089 ORTHO05D004687 4.1e-27 126.3 259 39.0
Rhsim08G0151200 Rhododendron simsii HOM05D004089 ORTHO05D004687 5.3e-27 125.9 312 33.0
Sc04g0002900 Simmondsia chinensis HOM05D004089 ORTHO05D004687 9.0e-27 125.2 304 36.5
BraA03t13814Z Brassica rapa HOM05D004089 ORTHO05D004687 1.2e-26 124.8 301 35.2
Migut.D01757 Erythranthe guttata HOM05D004089 ORTHO05D004687 1.5e-26 124.4 288 35.8
PGR004G1946 Punica granatum HOM05D004089 ORTHO05D004687 1.5e-26 124.4 297 38.0
BcaC03g18095 Brassica carinata HOM05D004089 ORTHO05D004687 2.6e-26 123.6 306 34.6
CSS0047924 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 3.4e-26 123.2 162 47.5
C07p44990 Brassica napus HOM05D004089 ORTHO05D004687 4.5e-26 122.9 301 35.5
Lalb_Chr13g0303071 Lupinus albus HOM05D004089 ORTHO05D004687 1.0e-25 121.7 296 36.1
ATR0730G119 Amborella trichopoda HOM05D004089 ORTHO05D004687 1.7e-25 120.9 324 34.0
CANSAT80G2067 Cannabis sativa HOM05D004089 ORTHO05D004687 2.9e-25 120.2 332 33.7
Ca_13877_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 8.5e-25 118.6 189 41.8
COL.COLO4_12233 Corchorus olitorius HOM05D004089 ORTHO05D004687 2.5e-24 117.1 115 56.5
SGA_v2.0_scaffold25G10938 Striga asiatica HOM05D004089 ORTHO05D004687 3.2e-24 116.7 308 34.7
BcaB07g29822 Brassica carinata HOM05D004089 ORTHO05D004687 7.2e-24 115.5 300 34.3
SalBow7G3788 Salvia bowleyana HOM05D004089 ORTHO05D004687 7.2e-24 115.5 286 36.0
Thhalv10005448m.g Eutrema salsugineum HOM05D004089 ORTHO05D004687 3.6e-23 113.2 328 31.1
Potri.012G068000 Populus trichocarpa HOM05D004089 ORTHO05D004687 3.6e-23 113.2 247 35.2
Eucgr.I02003 Eucalyptus grandis HOM05D004089 ORTHO05D004687 6.1e-23 112.5 292 34.6
Gohir.A11G032333 Gossypium hirsutum HOM05D004089 ORTHO05D004687 6.1e-23 112.5 254 34.6
Aa31LG11G2070 Aethionema arabicum HOM05D004089 ORTHO05D004687 1.0e-22 111.7 297 33.3
TAR369G0101 Trochodendron aralioides HOM05D004089 ORTHO05D004687 1.8e-22 110.9 135 45.2
BcaC04g23456 Brassica carinata HOM05D004089 ORTHO05D004687 3.9e-22 109.8 319 31.3
TAR626G1449 Trochodendron aralioides HOM05D004089 ORTHO05D004687 6.7e-22 109.0 135 43.7
SGA_v2.0_scaffold7G04046 Striga asiatica HOM05D004089 ORTHO05D004687 2.0e-21 107.5 305 32.1
Migut.I00216 Erythranthe guttata HOM05D004089 ORTHO05D004687 5.7e-21 105.9 308 32.1
BraA02t09111Z Brassica rapa HOM05D004089 ORTHO05D004687 7.4e-21 105.5 305 32.5
unitig_749.g13440 Utricularia gibba HOM05D004089 ORTHO05D004687 1.7e-20 104.4 296 32.8
C02p61630 Brassica napus HOM05D002313 ORTHO05D003747 4.8e-20 102.8 305 32.1
A02p41700 Brassica napus HOM05D002313 ORTHO05D004687 8.2e-20 102.1 305 31.8
THA.LOC104818514 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 8.2e-20 102.1 255 33.3
BolC2t12218H Brassica oleracea HOM05D002313 ORTHO05D003747 1.8e-19 100.9 280 33.6
unitig_749.g14136 Utricularia gibba HOM05D004089 ORTHO05D004687 5.3e-19 99.4 292 31.5
Lalb_Chr07g0178191 Lupinus albus HOM05D004089 ORTHO05D004687 6.9e-19 99.0 206 37.9
Cpa.g.sc13.300 Carica papaya HOM05D004089 ORTHO05D004687 2.0e-18 97.4 142 45.8
Lj9A467G76 Lonicera japonica HOM05D004089 ORTHO05D004687 2.0e-18 97.4 197 36.5
Dinv38750 Davidia involucrata HOM05D004089 ORTHO05D004687 1.0e-17 95.1 245 34.3
Oeu006382.1 Olea europaea HOM05D000714 ORTHO05D000544 2.2e-17 94.0 179 39.1
TPR.G12274 Trifolium pratense HOM05D000041 ORTHO05D006140 2.2e-17 94.0 105 45.7
PSO063G7677 Papaver somniferum HOM05D004089 ORTHO05D004687 5.5e-16 89.4 105 47.6
Zm00001eb136250 Zea mays HOM05D004089 ORTHO05D004687 9.4e-16 88.6 317 30.0
Rhsim08G0150900 Rhododendron simsii HOM05D004089 ORTHO05D004687 4.7e-15 86.3 156 37.2
CDE04G1821 Ceratophyllum demersum HOM05D004089 ORTHO05D004687 6.1e-15 85.9 153 32.7
CDE07G1350 Ceratophyllum demersum HOM05D004089 ORTHO05D004687 6.1e-15 85.9 143 33.6
Zm00001eb029590 Zea mays HOM05D004089 ORTHO05D004687 7.9e-15 85.5 321 29.6
Rhsim10G0035500 Rhododendron simsii HOM05D004089 ORTHO05D004687 1.5e-13 81.3 116 44.0
Gohir.A12G179600 Gossypium hirsutum HOM05D004089 ORTHO05D004687 1.3e-12 78.2 170 38.2
Os12g0577200 Oryza sativa ssp. japonica HOM05D004089 ORTHO05D004687 8.2e-12 75.5 330 27.9
Zm00001eb264770 Zea mays HOM05D004089 ORTHO05D004687 1.8e-11 74.3 320 30.0
AUR62008468 Chenopodium quinoa HOM05D000001 ORTHO05D011953 4.5e-10 69.7 124 37.1
Os12g0507400 Oryza sativa ssp. japonica HOM05D004089 ORTHO05D004687 5.9e-10 69.3 310 28.4
Aqoxy3G03503 Aquilegia oxysepala HOM05D003669 ORTHO05D005046 3.6e-07 60.1 288 25.7
Peaxi162Scf00097g00103 Petunia axillaris HOM05D003669 ORTHO05D005046 8.0e-07 58.9 290 25.9
CAN.G314.1 Capsicum annuum HOM05D003669 ORTHO05D005046 1.4e-06 58.2 288 24.3
CAN.G964.18 Capsicum annuum HOM05D003669 ORTHO05D005046 1.8e-06 57.8 288 24.7
Sopen01g006940 Solanum pennellii HOM05D003669 ORTHO05D005046 1.8e-06 57.8 288 24.0
CANSAT64G1602 Cannabis sativa HOM05D003669 ORTHO05D005046 3.0e-06 57.0 315 24.1
Nn8g39225 Nelumbo nucifera HOM05D003669 ORTHO05D012266 5.2e-06 56.2 286 26.9
Solyc01g010990.2 Solanum lycopersicum HOM05D003669 ORTHO05D005046 5.2e-06 56.2 288 23.6
Solyc05g012870.1 Solanum lycopersicum HOM05D003669 ORTHO05D005046 6.7e-06 55.8 288 24.3
PGSC0003DMG400026831 Solanum tuberosum HOM05D003669 ORTHO05D005046 6.7e-06 55.8 288 23.6
Cc11_g12530 Coffea canephora HOM05D003669 ORTHO05D005046 8.8e-06 55.5 320 24.4
PGSC0003DMG400028338 Solanum tuberosum HOM05D003669 ORTHO05D005046 8.8e-06 55.5 288 24.3


User provided reference genes

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