Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 6.9e-139 497.3 247 100.0
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 4.8e-108 394.8 250 79.2
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.1e-99 367.1 247 75.7
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.7e-97 359.8 247 72.1
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 2.9e-97 359.0 262 73.7
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 4.7e-95 351.7 214 83.2
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 4.8e-92 341.7 239 71.5
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 1.2e-90 337.0 243 67.9
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 3.8e-89 332.0 238 69.7
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 3.2e-88 328.9 246 67.1
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.6e-87 326.6 240 70.4
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 2.7e-87 325.9 239 66.5
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 2.7e-87 325.9 247 66.8
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 2.7e-87 325.9 247 68.4
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 3.6e-87 325.5 240 67.9
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 6.1e-87 324.7 216 73.6
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 8.0e-87 324.3 247 67.6
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 2.3e-86 322.8 250 66.4
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 4.0e-86 322.0 247 64.8
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 4.4e-85 318.5 236 67.8
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.3e-84 317.0 245 64.5
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 3.7e-84 315.5 206 74.8
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 6.3e-84 314.7 209 73.7
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.1e-83 313.9 247 63.6
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.1e-83 313.9 246 67.9
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 4.1e-83 312.0 241 63.1
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.2e-82 310.5 246 63.4
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.2e-82 310.5 246 63.4
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.0e-82 309.7 246 63.4
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.0e-81 307.4 244 66.8
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.1e-80 303.9 243 62.6
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 8.0e-79 297.7 241 63.1
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.0e-78 297.4 241 64.3
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.4e-78 297.0 240 61.7
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 4.0e-78 295.4 278 58.3
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.2e-77 293.9 241 63.9
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.2e-77 293.9 241 63.1
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.5e-77 293.5 239 62.8
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.5e-77 293.5 242 62.8
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 4.4e-77 292.0 251 60.2
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.7e-77 291.6 234 64.1
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 7.5e-77 291.2 237 62.9
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 9.8e-77 290.8 253 58.5
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.3e-76 290.4 193 71.0
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 2.2e-76 289.7 248 58.1
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 3.7e-76 288.9 239 66.9
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 3.7e-76 288.9 220 64.5
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 4.9e-76 288.5 236 64.0
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.9e-76 288.5 207 68.6
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 1.1e-75 287.3 248 59.7
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 1.8e-75 286.6 248 59.7
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.8e-75 286.6 207 68.1
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 2.4e-75 286.2 178 75.8
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 2.4e-75 286.2 239 61.1
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 4.1e-75 285.4 241 59.8
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 5.4e-75 285.0 241 59.8
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 1.6e-74 283.5 187 74.9
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 2.7e-74 282.7 242 62.4
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 5.9e-74 281.6 244 62.7
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 7.8e-74 281.2 248 56.9
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 1.0e-73 280.8 187 71.1
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 1.0e-73 280.8 187 71.1
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 1.3e-73 280.4 244 57.0
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.7e-73 280.0 269 56.9
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.7e-73 280.0 257 59.5
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.3e-73 279.6 255 56.9
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 2.9e-73 279.3 239 61.1
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 5.0e-73 278.5 235 61.7
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 6.6e-73 278.1 246 57.3
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 6.6e-73 278.1 246 57.3
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 6.6e-73 278.1 188 71.3
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 8.6e-73 277.7 241 60.6
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 1.1e-72 277.3 250 57.2
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 1.5e-72 276.9 190 70.0
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.5e-72 276.9 190 70.0
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.9e-72 276.6 245 59.2
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.9e-72 276.6 190 70.0
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 1.9e-72 276.6 199 70.9
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.9e-72 276.6 255 56.9
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 4.3e-72 275.4 250 56.8
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 4.3e-72 275.4 176 76.7
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 5.6e-72 275.0 248 57.3
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 9.5e-72 274.2 255 56.9
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.6e-71 273.5 247 56.3
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 2.8e-71 272.7 248 54.8
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 3.6e-71 272.3 183 72.7
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 3.6e-71 272.3 251 58.6
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 4.7e-71 271.9 182 72.5
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 6.1e-71 271.6 186 71.5
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 1.8e-70 270.0 238 58.4
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 2.6e-69 266.2 178 71.3
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 2.6e-69 266.2 181 70.7
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 1.3e-68 263.8 242 56.6
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.3e-68 263.8 236 59.7
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 1.3e-68 263.8 248 55.6
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 3.7e-68 262.3 179 71.5
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 3.7e-68 262.3 201 66.2
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.6e-66 256.9 205 61.0
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 3.9e-65 252.3 239 58.6
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 4.3e-64 248.8 196 63.3
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 7.3e-64 248.1 215 60.9
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.2e-63 245.0 150 80.0
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 1.1e-62 244.2 182 62.6
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 2.3e-62 243.0 154 76.0
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 2.3e-62 243.0 147 79.6
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.1e-62 242.7 150 79.3
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 3.1e-62 242.7 179 67.0
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 4.0e-62 242.3 154 75.3
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 8.9e-62 241.1 237 56.5
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.2e-61 240.7 179 65.4
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 2.6e-61 239.6 142 81.0
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.8e-61 238.4 191 62.3
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 9.8e-61 237.7 143 80.4
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 9.8e-61 237.7 154 77.3
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 9.8e-61 237.7 179 64.8
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 1.7e-60 236.9 199 62.3
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 2.2e-60 236.5 150 73.3
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.9e-60 236.1 200 59.0
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 6.4e-60 235.0 158 74.1
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 6.4e-60 235.0 148 73.0
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 7.8e-58 228.0 142 75.4
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.0e-57 227.6 162 67.3
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 5.6e-56 221.9 246 50.4
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 2.8e-55 219.5 249 49.4
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 8.9e-54 214.5 148 67.6
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 1.7e-52 210.3 128 75.8
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 5.4e-51 205.3 169 62.1
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 6.0e-50 201.8 161 67.1
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 3.0e-49 199.5 199 55.8
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 1.1e-48 197.6 198 54.0
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.9e-48 196.8 177 56.5
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.6e-47 193.7 140 63.6
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 5.2e-46 188.7 142 62.7
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 1.5e-45 187.2 142 62.7
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.0e-45 186.8 142 59.9
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.1e-43 181.0 142 58.5
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 4.6e-42 175.6 139 54.7
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.3e-40 169.1 195 47.2
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 2.6e-37 159.8 241 41.5
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 2.9e-36 156.4 145 60.0
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.6e-34 150.6 149 56.4
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.9e-32 143.7 172 49.4
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 4.0e-30 136.0 126 55.6
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 2.0e-29 133.7 157 50.3
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 6.2e-23 112.1 79 62.0
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 5.5e-19 99.0 140 39.3
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 2.3e-17 93.6 148 35.1
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 5.7e-16 89.0 131 36.6
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 4.1e-14 82.8 147 34.0
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.0e-13 80.5 73 52.1
QL02p051406 Quercus lobata HOM05D004693 ORTHO05D005545 3.4e-13 79.7 91 49.5
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.0e-12 78.2 154 29.2
FAN08G1603 Fragaria x ananassa HOM05D004693 ORTHO05D005545 5.5e-11 72.4 94 44.7
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.2e-11 72.0 82 51.2
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.6e-10 69.3 120 32.5
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 4.6e-10 69.3 83 48.2
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 6.1e-10 68.9 120 30.0
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.0e-09 68.2 150 30.7
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 5.1e-09 65.9 121 39.7
FAN04G3248 Fragaria x ananassa HOM05D004693 ORTHO05D005545 6.7e-09 65.5 62 46.8


User provided reference genes

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