Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G099300 Populus trichocarpa HOM05D006950 ORTHO05D008798 4.0e-201 704.5 346 100.0
Manes.02G068900 Manihot esculenta HOM05D006950 ORTHO05D008798 1.9e-155 552.7 344 78.8
Ciclev10012146m.g Citrus clementina HOM05D006950 ORTHO05D008798 6.4e-151 537.7 342 78.1
TWI53G1811 Tripterygium wilfordii HOM05D006950 ORTHO05D008798 1.4e-150 536.6 344 79.4
Dinv33949 Davidia involucrata HOM05D006950 ORTHO05D008798 2.1e-146 522.7 341 74.8
Atru.chr1.1690 Acer truncatum HOM05D006950 ORTHO05D008798 2.8e-146 522.3 332 77.7
CiPaw.04G042300 Carya illinoinensis HOM05D006950 ORTHO05D008798 8.2e-146 520.8 340 75.3
MD17G1244700 Malus domestica HOM05D006950 ORTHO05D008798 5.3e-145 518.1 339 74.9
Thecc.04G133400 Theobroma cacao HOM05D006950 ORTHO05D008798 6.9e-145 517.7 342 76.3
Haze_14155 Corylus avellana HOM05D006950 ORTHO05D008798 1.5e-144 516.5 339 76.4
GSVIVG01031019001 Vitis vinifera HOM05D006950 ORTHO05D008798 2.9e-143 512.3 318 78.0
TAR629G2916 Trochodendron aralioides HOM05D006950 ORTHO05D008798 6.5e-143 511.1 338 74.3
Prupe.3G142000 Prunus persica HOM05D006950 ORTHO05D008798 8.4e-143 510.8 345 73.3
Actinidia36323 Actinidia chinensis HOM05D006950 ORTHO05D008798 1.1e-142 510.4 341 73.3
Cpa.g.sc282.6 Carica papaya HOM05D006950 ORTHO05D008798 1.1e-142 510.4 335 74.3
Gohir.A11G163600 Gossypium hirsutum HOM05D006950 ORTHO05D008798 4.2e-142 508.4 341 73.6
Gorai.007G181600 Gossypium raimondii HOM05D006950 ORTHO05D008798 7.1e-142 507.7 341 73.6
CANSAT78G2296 Cannabis sativa HOM05D006950 ORTHO05D008798 3.5e-141 505.4 327 75.8
Gohir.D11G169900 Gossypium hirsutum HOM05D006950 ORTHO05D008798 1.3e-140 503.4 341 72.7
vmacro05553 Vaccinium macrocarpon HOM05D006950 ORTHO05D008798 1.9e-139 499.6 343 72.6
Peaxi162Scf00394g00061 Petunia axillaris HOM05D006950 ORTHO05D008798 2.4e-137 492.7 341 69.8
Nitab4.5_0000912g0220 Nicotiana tabacum HOM05D006950 ORTHO05D008798 3.1e-137 492.3 345 69.6
PGR142G3639 Punica granatum HOM05D006950 ORTHO05D008798 1.2e-136 490.3 329 72.0
Lj4A191T50 Lonicera japonica HOM05D006950 ORTHO05D008798 1.5e-136 490.0 329 72.6
MSTRG.15296 Avicennia marina HOM05D006950 ORTHO05D008798 2.0e-136 489.6 314 74.5
Nitab4.5_0000659g0020 Nicotiana tabacum HOM05D006950 ORTHO05D008798 2.6e-136 489.2 345 69.0
Hma1.2p1_0136F.1_g062250 Hydrangea macrophylla HOM05D006950 ORTHO05D008798 2.9e-135 485.7 341 71.6
Oeu007452.1 Olea europaea HOM05D006950 ORTHO05D008798 5.0e-135 485.0 346 71.1
Hund13713 Selenicereus undatus HOM05D006950 ORTHO05D008798 8.5e-135 484.2 344 70.1
Aqoxy3G00267 Aquilegia oxysepala HOM05D006950 ORTHO05D008798 1.4e-134 483.4 349 68.2
PGSC0003DMG400026406 Solanum tuberosum HOM05D006950 ORTHO05D008798 1.9e-134 483.0 325 72.3
Cc07_g08790 Coffea canephora HOM05D006950 ORTHO05D008798 2.5e-134 482.6 341 71.3
Lj1g0016691 Lotus japonicus HOM05D006950 ORTHO05D008798 1.6e-133 479.9 335 72.2
Thhalv10027821m.g Eutrema salsugineum HOM05D006950 ORTHO05D008798 2.1e-133 479.6 347 69.5
EL10Ac2g04564 Beta vulgaris HOM05D006950 ORTHO05D008798 2.3e-132 476.1 344 68.9
Migut.L00319 Erythranthe guttata HOM05D006950 ORTHO05D008798 3.0e-132 475.7 329 70.8
Sopen02g030760 Solanum pennellii HOM05D006950 ORTHO05D008798 3.3e-131 472.2 325 70.5
CAN.G625.25 Capsicum annuum HOM05D006950 ORTHO05D008798 5.7e-131 471.5 322 70.8
AL7G52300 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 7.4e-131 471.1 346 68.5
ClCG03G006740 Citrullus lanatus HOM05D006950 ORTHO05D008798 1.3e-130 470.3 355 67.3
Eucgr.G03073 Eucalyptus grandis HOM05D006950 ORTHO05D008798 1.3e-130 470.3 313 73.8
Sed0021084 Sechium edule HOM05D006950 ORTHO05D008798 2.2e-130 469.5 343 68.5
Nn3g17879 Nelumbo nucifera HOM05D006950 ORTHO05D008798 4.8e-130 468.4 354 66.1
MBI16_g34414_MAGBIO Magnolia biondii HOM05D006950 ORTHO05D008798 1.8e-129 466.5 353 65.2
AL7G52280 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 6.9e-129 464.5 346 67.3
AL7G52430 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 6.9e-129 464.5 346 67.3
CsaV3_1G032300 Cucumis sativus L. HOM05D006950 ORTHO05D008798 6.9e-129 464.5 326 70.9
arahy.Tifrunner.gnm1.ann1.J0JTFL Arachis hypogaea HOM05D006950 ORTHO05D008798 1.5e-128 463.4 323 69.3
arahy.Tifrunner.gnm1.ann1.QXSY6T Arachis hypogaea HOM05D006950 ORTHO05D008798 1.5e-128 463.4 323 69.3
TPR.G9714 Trifolium pratense HOM05D006950 ORTHO05D008798 1.5e-128 463.4 320 71.9
BraA07t29668Z Brassica rapa HOM05D006950 ORTHO05D008798 5.9e-128 461.5 345 67.2
A07p19680 Brassica napus HOM05D006950 ORTHO05D008798 7.7e-128 461.1 345 67.2
C06p18110 Brassica napus HOM05D006950 ORTHO05D008798 7.7e-128 461.1 346 67.6
BolC6t37017H Brassica oleracea HOM05D006950 ORTHO05D008798 7.7e-128 461.1 345 66.7
Glyma.18G296400 Glycine max HOM05D006950 ORTHO05D008798 7.7e-128 461.1 326 69.9
Aa31LG9G17120 Aethionema arabicum HOM05D006950 ORTHO05D008798 1.0e-127 460.7 334 68.0
Medtr7g007310 Medicago truncatula HOM05D006950 ORTHO05D008798 1.3e-127 460.3 320 70.9
Lalb_Chr17g0335791 Lupinus albus HOM05D006950 ORTHO05D008798 1.7e-127 459.9 323 72.1
THA.LOC104805569 Tarenaya hassleriana HOM05D006950 ORTHO05D008798 2.2e-127 459.5 328 68.0
BcaC08g44377 Brassica carinata HOM05D006950 ORTHO05D008798 6.5e-127 458.0 346 67.1
Phvul.008G006100 Phaseolus vulgaris HOM05D006950 ORTHO05D008798 6.5e-127 458.0 325 69.8
VMungo1383G3190 Vigna mungo HOM05D006950 ORTHO05D008798 1.4e-126 456.8 322 69.6
ECA246G0391 Erigeron canadensis HOM05D006950 ORTHO05D008798 7.2e-126 454.5 329 69.6
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 1.6e-125 453.4 339 66.1
AUR62023300 Chenopodium quinoa HOM05D006950 ORTHO05D008798 1.0e-124 450.7 344 66.9
PSO017G6790 Papaver somniferum HOM05D006950 ORTHO05D008798 5.1e-124 448.4 318 67.9
Eucgr.G03074 Eucalyptus grandis HOM05D006950 ORTHO05D008798 2.2e-122 443.0 313 67.1
Sc11g0008340 Simmondsia chinensis HOM05D006950 ORTHO05D008798 2.2e-122 443.0 344 65.4
HanXRQChr15g0471491 Helianthus annuus HOM05D006950 ORTHO05D008798 1.4e-121 440.3 326 67.5
Lsat_1_v5_gn_3_79740 Lactuca sativa HOM05D006950 ORTHO05D008798 2.6e-120 436.0 337 68.8
Cfa007922 Carpinus fangiana HOM05D006950 ORTHO05D008798 3.4e-120 435.6 359 64.9
CDE06G1236 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 7.7e-120 434.5 314 66.9
PSO478G4580 Papaver somniferum HOM05D006950 ORTHO05D008798 1.1e-118 430.6 318 66.4
ATR1125G044 Amborella trichopoda HOM05D006950 ORTHO05D008798 4.2e-118 428.7 319 65.5
Duzib138G1034 Durio zibethinus HOM05D006950 ORTHO05D008798 6.1e-117 424.9 305 72.8
BcaB02g08012 Brassica carinata HOM05D006950 ORTHO05D008798 1.8e-116 423.3 321 67.9
Sabra04G0080700 Salix brachista HOM05D006950 ORTHO05D008798 3.9e-116 422.2 219 93.6
Sp7g03690 Schrenkiella parvula HOM05D006950 ORTHO05D008798 7.4e-115 417.9 291 70.1
Carub.0007s3770 Capsella rubella HOM05D006950 ORTHO05D008798 8.2e-114 414.5 291 69.4
Psat3g205440 Pisum sativum HOM05D006950 ORTHO05D008798 9.1e-113 411.0 322 64.6
COL.COLO4_09336 Corchorus olitorius HOM05D006950 ORTHO05D008798 1.5e-107 393.7 312 65.7
Rhsim10G0067400 Rhododendron simsii HOM05D006950 ORTHO05D008798 8.2e-106 387.9 327 62.4
MELO3C002748.2 Cucumis melo HOM05D006950 ORTHO05D008798 1.1e-102 377.5 282 68.1
QL02p051313 Quercus lobata HOM05D006950 ORTHO05D008798 2.7e-101 372.9 246 75.6
DCAR_017190 Daucus carota HOM05D006950 ORTHO05D008798 2.3e-100 369.8 329 58.4
CSS0013921 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 1.4e-97 360.5 248 70.2
Ca_04046_v3 Cicer arietinum L. HOM05D006950 ORTHO05D008798 8.6e-95 351.3 224 77.2
AUR62009002 Chenopodium quinoa HOM05D006950 ORTHO05D008798 2.3e-92 343.2 323 58.2
AL686U10010 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 9.2e-89 331.3 346 52.6
Pp3c2_1510 Physcomitrium patens HOM05D006950 ORTHO05D008798 4.5e-88 328.9 302 53.0
CARHR214230 Cardamine hirsuta HOM05D006950 ORTHO05D008798 1.3e-82 310.8 210 71.0
SMO232G0122 Selaginella moellendorffii HOM05D006950 ORTHO05D008798 1.4e-81 307.4 306 52.0
AL7G52400 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 3.0e-79 299.7 317 52.7
Mapoly0010s0040 Marchantia polymorpha HOM05D006950 ORTHO05D008798 5.2e-76 288.9 305 47.2
Nn3g17880 Nelumbo nucifera HOM05D006950 ORTHO05D008798 2.1e-72 276.9 202 65.8
AT5G38360 Arabidopsis thaliana HOM05D006950 ORTHO05D008798 1.1e-70 271.2 209 64.1
Cre04.g213100 Chlamydomonas reinhardtii HOM05D006950 ORTHO05D008798 4.7e-61 239.2 338 38.8
CBR_g51039 Chara braunii HOM05D006950 ORTHO05D008798 1.4e-60 237.7 354 36.2
arahy.Tifrunner.gnm1.ann1.IRCK44 Arachis hypogaea HOM05D006950 ORTHO05D008798 1.0e-55 221.5 170 64.7
MCO15G495 Micromonas commoda HOM05D006950 ORTHO05D008798 8.7e-55 218.4 258 43.8
arahy.Tifrunner.gnm1.ann1.5L16AK Arachis hypogaea HOM05D006950 ORTHO05D008798 1.0e-47 194.9 199 50.8
CDE12G0582 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 3.9e-47 193.0 317 38.8
arahy.Tifrunner.gnm1.ann1.J8JPII Arachis hypogaea HOM05D006950 ORTHO05D008798 2.1e-40 170.6 209 47.4
AagrBONN_evm.TU.Sc2ySwM_362.1440 Anthoceros agrestis HOM05D006950 ORTHO05D008798 2.5e-38 163.7 162 53.1
AL7G52260 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 2.8e-37 160.2 135 60.7
Glyma.08G365850 Glycine max HOM05D006950 ORTHO05D008798 9.0e-36 155.2 103 73.8
QL02p051310 Quercus lobata HOM05D006950 ORTHO05D008798 1.2e-35 154.8 90 80.0
Ca_04053_v3 Cicer arietinum L. HOM05D006950 ORTHO05D008798 1.7e-34 151.0 88 83.0
PRCOL_00005525 Prasinoderma coloniale HOM05D006950 ORTHO05D008798 6.0e-32 142.5 351 29.3
CSS0023207 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 4.3e-30 136.3 116 56.0
arahy.Tifrunner.gnm1.ann1.BFZE3W Arachis hypogaea HOM05D006950 ORTHO05D008798 2.1e-29 134.0 97 69.1
Solyc02g086080.4 Solanum lycopersicum HOM05D006950 ORTHO05D008798 2.4e-28 130.6 100 62.0
AagrBONN_evm.TU.Sc2ySwM_368.701 Anthoceros agrestis HOM05D006950 ORTHO05D008798 8.7e-23 112.1 307 28.0
Os04g0381400 Oryza sativa ssp. japonica HOM05D006950 ORTHO05D008798 1.9e-22 110.9 139 44.6
Potri.017G115350 Populus trichocarpa HOM05D006950 ORTHO05D008798 3.8e-18 96.7 70 70.0
Eucgr.F04110 Eucalyptus grandis HOM05D000916 ORTHO05D007921 6.1e-08 62.8 307 26.4
Haze_01682 Corylus avellana HOM05D006950 ORTHO05D043621 2.3e-07 60.8 30 83.3
MSTRG.25473 Avicennia marina HOM05D000916 ORTHO05D007921 7.4e-06 55.8 119 32.8


User provided reference genes

Program Settings