Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 1.4e-66 256.1 131 100.0
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 1.7e-51 206.1 126 84.1
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 9.9e-44 180.3 151 66.9
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 2.2e-43 179.1 151 66.9
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 1.7e-40 169.5 126 73.8
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 3.9e-40 168.3 114 76.3
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 4.3e-39 164.9 126 71.4
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 1.4e-37 159.8 127 70.9
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 4.4e-36 154.8 126 65.9
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 4.4e-36 154.8 126 65.9
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 2.2e-35 152.5 126 69.0
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 3.8e-35 151.8 126 64.3
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 3.8e-35 151.8 128 68.0
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 6.4e-35 151.0 126 65.9
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 1.1e-34 150.2 128 67.2
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.4e-34 149.8 127 68.5
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 5.4e-34 147.9 114 67.5
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 9.3e-34 147.1 126 65.9
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 9.3e-34 147.1 126 63.5
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.7e-33 145.6 126 65.1
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.5e-33 145.2 126 64.3
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 9.6e-31 137.1 128 63.3
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 3.6e-30 135.2 127 62.2
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.8e-30 134.8 126 60.3
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.8e-29 132.9 128 62.5
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.4e-29 132.5 126 61.1
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 3.1e-29 132.1 138 60.9
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 1.2e-28 130.2 127 60.6
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 1.7e-27 126.3 126 59.5
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 1.4e-26 123.2 140 57.1
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 4.2e-26 121.7 120 60.0
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.2e-26 121.7 128 57.8
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 4.6e-25 118.2 121 57.0
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 1.1e-23 113.6 128 57.8
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 1.9e-23 112.8 130 54.6
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 9.6e-23 110.5 119 53.8
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.3e-22 110.2 126 52.4
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 1.6e-22 109.8 129 55.0
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.6e-22 109.8 126 52.4
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 2.8e-22 109.0 129 54.3
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 8.1e-22 107.5 152 50.0
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 8.1e-22 107.5 133 50.4
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 8.1e-22 107.5 126 51.6
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 2.4e-21 105.9 128 55.5
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 5.3e-21 104.8 124 50.0
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 9.0e-21 104.0 126 49.2
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 2.0e-20 102.8 116 58.6
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 2.6e-20 102.4 141 49.6
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 5.8e-20 101.3 123 53.7
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 5.8e-20 101.3 126 47.6
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 7.6e-20 100.9 138 47.8
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 4.9e-19 98.2 91 60.4
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 8.4e-19 97.4 131 48.1
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 1.4e-18 96.7 105 53.3
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 1.9e-18 96.3 105 55.2
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 2.5e-18 95.9 146 48.6
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 3.2e-18 95.5 127 49.6
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 9.3e-18 94.0 106 50.0
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 1.2e-17 93.6 124 47.6
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 1.6e-17 93.2 126 49.2
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 4.6e-17 91.7 132 51.5
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 4.6e-17 91.7 127 44.9
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 7.9e-17 90.9 125 48.8
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 1.0e-16 90.5 132 48.5
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 1.8e-16 89.7 138 46.4
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.9e-16 88.6 99 56.6
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 5.1e-16 88.2 73 68.5
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 6.7e-16 87.8 129 44.2
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 2.5e-15 85.9 130 43.1
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 3.3e-15 85.5 134 45.5
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 3.3e-15 85.5 130 47.7
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 9.6e-15 84.0 142 46.5
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.6e-14 83.2 123 46.3
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.6e-14 83.2 139 43.2
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 1.6e-14 83.2 103 52.4
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 4.8e-14 81.6 76 61.8
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 8.2e-14 80.9 117 47.0
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 1.1e-13 80.5 143 43.4
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.1e-13 80.5 143 43.4
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.1e-13 80.5 143 43.4
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.1e-13 80.5 143 43.4
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 1.1e-13 80.5 129 46.5
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 1.1e-13 80.5 82 59.8
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 2.4e-13 79.3 142 40.8
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 3.1e-13 79.0 100 51.0
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 4.1e-13 78.6 122 46.7
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 6.9e-13 77.8 84 52.4
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 1.2e-12 77.0 77 58.4
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.5e-12 76.6 85 55.3
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 5.9e-12 74.7 95 51.6
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.3e-11 73.6 141 41.8
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 8.4e-11 70.9 92 54.3
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 1.4e-10 70.1 100 47.0
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.5e-10 69.3 123 42.3
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 2.5e-10 69.3 112 42.0
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 3.2e-10 68.9 134 41.8
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 3.2e-10 68.9 74 58.1
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 5.5e-10 68.2 154 39.0
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 5.5e-10 68.2 154 39.0
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 5.5e-10 68.2 143 38.5
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 7.2e-10 67.8 151 39.1
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 9.3e-10 67.4 88 48.9
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 9.3e-10 67.4 83 49.4
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.2e-09 67.0 136 39.7
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 1.2e-09 67.0 171 32.2
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 1.6e-09 66.6 121 38.8
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 1.6e-09 66.6 154 38.3
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 3.5e-09 65.5 121 38.8
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 3.5e-09 65.5 158 36.7
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 4.6e-09 65.1 158 36.7
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 6.1e-09 64.7 95 48.4
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 6.1e-09 64.7 122 41.0
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 7.9e-09 64.3 139 39.6
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 1.0e-08 63.9 99 41.4
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 1.3e-08 63.5 139 38.8
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 1.3e-08 63.5 144 40.3
Gohir.A07G174000 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.8e-08 63.2 51 66.7
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 3.0e-08 62.4 79 50.6
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 3.9e-08 62.0 141 34.8
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 6.7e-08 61.2 136 37.5
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 4.3e-07 58.5 137 35.8
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 9.7e-07 57.4 125 37.6
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 1.3e-06 57.0 136 35.3
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 1.3e-06 57.0 137 34.3
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 1.6e-06 56.6 140 33.6
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 3.7e-06 55.5 153 33.3
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 4.8e-06 55.1 144 34.0


User provided reference genes

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