Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G095475 Populus trichocarpa HOM05D004456 ORTHO05D005287 3.0e-34 147.9 72 100.0
Sabra17G0098500 Salix brachista HOM05D004456 ORTHO05D005287 2.5e-25 118.2 65 87.7
Potri.017G119300 Populus trichocarpa HOM05D004456 ORTHO05D005287 4.3e-25 117.5 65 86.2
Aa31LG7G1200 Aethionema arabicum HOM05D004456 ORTHO05D005287 1.4e-23 112.5 65 80.0
BcaC07g38811 Brassica carinata HOM05D004456 ORTHO05D005287 1.4e-23 112.5 65 80.0
A08p31300 Brassica napus HOM05D004456 ORTHO05D005287 1.4e-23 112.5 65 80.0
A06p12700 Brassica napus HOM05D004456 ORTHO05D005287 2.4e-23 111.7 65 80.0
C05p15000 Brassica napus HOM05D004456 ORTHO05D005287 2.4e-23 111.7 65 80.0
BolC5t30215H Brassica oleracea HOM05D004456 ORTHO05D005287 2.4e-23 111.7 65 80.0
BraA06t24430Z Brassica rapa HOM05D004456 ORTHO05D005287 2.4e-23 111.7 65 80.0
C08p17530 Brassica napus HOM05D004456 ORTHO05D005287 3.1e-23 111.3 65 78.5
BolC8t49379H Brassica oleracea HOM05D004456 ORTHO05D005287 3.1e-23 111.3 65 78.5
Ciclev10029584m.g Citrus clementina HOM05D004456 ORTHO05D005287 5.3e-23 110.5 60 85.0
Thhalv10009114m.g Eutrema salsugineum HOM05D004456 ORTHO05D005287 5.3e-23 110.5 65 80.0
Sp1g14890 Schrenkiella parvula HOM05D004456 ORTHO05D005287 5.3e-23 110.5 65 80.0
THA.LOC104812342 Tarenaya hassleriana HOM05D004456 ORTHO05D005287 6.9e-23 110.2 65 78.5
BcaB03g13034 Brassica carinata HOM05D004456 ORTHO05D005287 9.0e-23 109.8 65 80.0
BcaB02g06679 Brassica carinata HOM05D004456 ORTHO05D005287 2.0e-22 108.6 65 78.5
CARHR017200 Cardamine hirsuta HOM05D004456 ORTHO05D005287 3.4e-22 107.8 65 78.5
AT1G16740 Arabidopsis thaliana HOM05D004456 ORTHO05D005287 4.5e-22 107.5 65 78.5
BraA08t35053Z Brassica rapa HOM05D004456 ORTHO05D005287 4.5e-22 107.5 65 76.9
Carub.0001s1648 Capsella rubella HOM05D004456 ORTHO05D005287 4.5e-22 107.5 65 78.5
Manes.03G095700 Manihot esculenta HOM05D004456 ORTHO05D005287 7.6e-22 106.7 65 81.5
AL1G28910 Arabidopsis lyrata HOM05D004456 ORTHO05D005287 1.0e-21 106.3 65 76.9
PGR142G2466 Punica granatum HOM05D004456 ORTHO05D005287 1.7e-21 105.5 59 84.7
PGR142G2683 Punica granatum HOM05D004456 ORTHO05D005287 1.7e-21 105.5 59 84.7
PGR142G0549 Punica granatum HOM05D004456 ORTHO05D005287 3.8e-21 104.4 59 83.1
Atru.chr8.947 Acer truncatum HOM05D004456 ORTHO05D005287 5.0e-21 104.0 60 80.0
Gohir.D11G338800 Gossypium hirsutum HOM05D004456 ORTHO05D005287 5.0e-21 104.0 65 81.5
Gorai.007G368500 Gossypium raimondii HOM05D004456 ORTHO05D005287 5.0e-21 104.0 65 81.5
Eucgr.B03760 Eucalyptus grandis HOM05D004456 ORTHO05D005287 6.5e-21 103.6 59 81.4
Prupe.1G563700 Prunus persica HOM05D004456 ORTHO05D005287 6.5e-21 103.6 60 80.0
Prupe.4G128400 Prunus persica HOM05D004456 ORTHO05D005287 6.5e-21 103.6 60 80.0
COL.COLO4_26811 Corchorus olitorius HOM05D004456 ORTHO05D005287 8.4e-21 103.2 65 80.0
QL06p000082 Quercus lobata HOM05D004456 ORTHO05D005287 8.4e-21 103.2 62 80.6
arahy.Tifrunner.gnm1.ann1.PTU9AS Arachis hypogaea HOM05D004456 ORTHO05D005287 1.4e-20 102.4 59 83.1
arahy.Tifrunner.gnm1.ann1.VAHF8H Arachis hypogaea HOM05D004456 ORTHO05D005287 1.4e-20 102.4 59 83.1
Gohir.A11G319600 Gossypium hirsutum HOM05D004456 ORTHO05D005287 1.4e-20 102.4 65 78.5
Medtr0027s0250 Medicago truncatula HOM05D004456 ORTHO05D005287 1.9e-20 102.1 57 86.0
Medtr5g087380 Medicago truncatula HOM05D004456 ORTHO05D005287 1.9e-20 102.1 57 86.0
TPR.G29918 Trifolium pratense HOM05D004456 ORTHO05D005287 1.9e-20 102.1 57 86.0
Phvul.009G196700 Phaseolus vulgaris HOM05D004456 ORTHO05D005287 2.5e-20 101.7 57 84.2
VMungo1309G1322 Vigna mungo HOM05D004456 ORTHO05D005287 2.5e-20 101.7 57 84.2
Ca_06131_v3 Cicer arietinum L. HOM05D004456 ORTHO05D005287 3.2e-20 101.3 57 84.2
Duzib235G0097 Durio zibethinus HOM05D004456 ORTHO05D005287 3.2e-20 101.3 65 76.9
Glyma.02G272000 Glycine max HOM05D004456 ORTHO05D005287 3.2e-20 101.3 57 84.2
ClCG02G018700 Citrullus lanatus HOM05D004456 ORTHO05D005287 4.2e-20 100.9 65 78.5
MELO3C019631.2 Cucumis melo HOM05D004456 ORTHO05D005287 4.2e-20 100.9 65 78.5
CiPaw.01G092700 Carya illinoinensis HOM05D004456 ORTHO05D005287 5.5e-20 100.5 62 79.0
CsaV3_6G013470 Cucumis sativus L. HOM05D004456 ORTHO05D005287 5.5e-20 100.5 65 78.5
Thecc.06G049600 Theobroma cacao HOM05D004456 ORTHO05D005287 5.5e-20 100.5 65 75.4
Peaxi162Scf00267g00035 Petunia axillaris HOM05D004456 ORTHO05D005287 7.1e-20 100.1 69 68.1
Haze_16244 Corylus avellana HOM05D004456 ORTHO05D005287 9.3e-20 99.8 60 80.0
Lalb_Chr04g0249811 Lupinus albus HOM05D004456 ORTHO05D005287 9.3e-20 99.8 59 81.4
Sed0012483 Sechium edule HOM05D004456 ORTHO05D005287 9.3e-20 99.8 60 80.0
TAR374G0177 Trochodendron aralioides HOM05D004456 ORTHO05D005287 9.3e-20 99.8 60 80.0
LjContig00564g0013918 Lotus japonicus HOM05D004456 ORTHO05D005287 1.2e-19 99.4 59 79.7
TAR622G1262 Trochodendron aralioides HOM05D004456 ORTHO05D005287 1.6e-19 99.0 62 77.4
Dinv05126 Davidia involucrata HOM05D004456 ORTHO05D005287 2.1e-19 98.6 62 75.8
PGR073G0001 Punica granatum HOM05D004456 ORTHO05D005287 2.1e-19 98.6 59 81.4
PGR073G0004 Punica granatum HOM05D004456 ORTHO05D005287 2.1e-19 98.6 59 81.4
PGR073G0005 Punica granatum HOM05D004456 ORTHO05D005287 2.1e-19 98.6 59 81.4
PGR087G0002 Punica granatum HOM05D004456 ORTHO05D005287 2.1e-19 98.6 59 81.4
PGR087G0004 Punica granatum HOM05D004456 ORTHO05D005287 2.1e-19 98.6 59 81.4
PGR142G2495 Punica granatum HOM05D004456 ORTHO05D005287 2.1e-19 98.6 59 79.7
HanXRQChr03g0087831 Helianthus annuus HOM05D004456 ORTHO05D005287 2.7e-19 98.2 60 76.7
Lalb_Chr10g0105771 Lupinus albus HOM05D004456 ORTHO05D005287 2.7e-19 98.2 59 79.7
TWI60G0757 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 2.7e-19 98.2 65 75.4
CANSAT35G0656 Cannabis sativa HOM05D004456 ORTHO05D005287 3.5e-19 97.8 65 73.8
CANSAT56G2838 Cannabis sativa HOM05D004456 ORTHO05D005287 3.5e-19 97.8 65 73.8
Aqoxy3G00192 Aquilegia oxysepala HOM05D004456 ORTHO05D005287 4.6e-19 97.4 56 82.1
Sed0010742 Sechium edule HOM05D004456 ORTHO05D005287 4.6e-19 97.4 62 74.2
PGR142G0749 Punica granatum HOM05D004456 ORTHO05D005287 6.1e-19 97.1 59 78.0
EL10Ac8g19692 Beta vulgaris HOM05D004456 ORTHO05D005287 1.0e-18 96.3 66 71.2
HanXRQChr17g0543051 Helianthus annuus HOM05D004456 ORTHO05D005287 1.0e-18 96.3 60 75.0
PGR142G0123 Punica granatum HOM05D004456 ORTHO05D005287 1.0e-18 96.3 59 79.7
Hund17691 Selenicereus undatus HOM05D004456 ORTHO05D005287 1.3e-18 95.9 62 74.2
TWI81G0537 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 1.3e-18 95.9 65 73.8
Actinidia13485 Actinidia chinensis HOM05D004456 ORTHO05D005287 1.8e-18 95.5 60 78.3
ECA246G0212 Erigeron canadensis HOM05D004456 ORTHO05D005287 2.3e-18 95.1 56 78.6
PGR073G0006 Punica granatum HOM05D004456 ORTHO05D005287 2.3e-18 95.1 59 78.0
PGR142G0707 Punica granatum HOM05D004456 ORTHO05D005287 2.3e-18 95.1 59 79.7
PGR142G1158 Punica granatum HOM05D004456 ORTHO05D005287 2.3e-18 95.1 59 78.0
CSS0000388 Camellia sinensis var. sinensis HOM05D004456 ORTHO05D005287 3.9e-18 94.4 60 78.3
DCAR_003856 Daucus carota HOM05D004456 ORTHO05D005287 3.9e-18 94.4 56 78.6
MD07G1169200 Malus domestica HOM05D004456 ORTHO05D005287 3.9e-18 94.4 56 76.8
MD10G1216300 Malus domestica HOM05D004456 ORTHO05D005287 5.1e-18 94.0 56 76.8
Solyc02g069840.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 5.1e-18 94.0 62 71.0
Sopen02g019000 Solanum pennellii HOM05D004456 ORTHO05D005287 5.1e-18 94.0 62 71.0
PGSC0003DMG400021190 Solanum tuberosum HOM05D004456 ORTHO05D005287 5.1e-18 94.0 62 71.0
GSVIVG01015827001 Vitis vinifera HOM05D004456 ORTHO05D005287 5.1e-18 94.0 62 72.6
SGA_v2.0_scaffold223G42863 Striga asiatica HOM05D004456 ORTHO05D005287 1.1e-17 92.8 62 72.6
Ah.06g192000 Amaranthus hybridus HOM05D004456 ORTHO05D005287 1.5e-17 92.4 62 72.6
Nitab4.5_0001225g0030 Nicotiana tabacum HOM05D004456 ORTHO05D005287 1.5e-17 92.4 62 69.4
Nitab4.5_0004615g0060 Nicotiana tabacum HOM05D004456 ORTHO05D005287 1.5e-17 92.4 62 69.4
Zm00001eb353650 Zea mays HOM05D004456 ORTHO05D005287 1.5e-17 92.4 62 72.6
Oeu041103.1 Olea europaea HOM05D004456 ORTHO05D005287 1.9e-17 92.0 50 86.0
Lsat_1_v5_gn_4_69821 Lactuca sativa HOM05D004456 ORTHO05D005287 2.5e-17 91.7 56 75.0
PGR142G2293 Punica granatum HOM05D004456 ORTHO05D005287 2.5e-17 91.7 59 76.3
PGR142G2513 Punica granatum HOM05D004456 ORTHO05D005287 2.5e-17 91.7 59 76.3
CDE04G1757 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 4.3e-17 90.9 56 78.6
CDE08G1311 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 4.3e-17 90.9 56 78.6
Psat2g023600 Pisum sativum HOM05D004456 ORTHO05D005287 4.3e-17 90.9 57 78.9
Hma1.2p1_0333F.1_g128240 Hydrangea macrophylla HOM05D004456 ORTHO05D005287 5.7e-17 90.5 60 70.0
unitig_37.g12076 Utricularia gibba HOM05D004456 ORTHO05D005287 5.7e-17 90.5 62 72.6
MSTRG.14797 Avicennia marina HOM05D004456 ORTHO05D005287 7.4e-17 90.1 62 67.7
Lsat_1_v5_gn_1_42081 Lactuca sativa HOM05D004456 ORTHO05D005287 7.4e-17 90.1 56 73.2
MBI03_g42617_MAGBIO Magnolia biondii HOM05D004456 ORTHO05D005287 7.4e-17 90.1 62 74.2
Oeu015180.1 Olea europaea HOM05D004456 ORTHO05D005287 7.4e-17 90.1 50 84.0
PSO384G3508 Papaver somniferum HOM05D004456 ORTHO05D005287 7.4e-17 90.1 56 75.0
Cc09_g08010 Coffea canephora HOM05D004456 ORTHO05D005287 9.7e-17 89.7 62 69.4
PSO339G5129 Papaver somniferum HOM05D004456 ORTHO05D005287 1.3e-16 89.4 56 75.0
unitig_92.g28171 Utricularia gibba HOM05D004456 ORTHO05D005287 1.3e-16 89.4 62 72.6
vmacro03444 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 1.6e-16 89.0 56 76.8
FAN25G2185 Fragaria x ananassa HOM05D004456 ORTHO05D005287 2.2e-16 88.6 51 80.4
Os01g0734100 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 2.2e-16 88.6 53 77.4
Os05g0528200 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 2.2e-16 88.6 50 82.0
SalBow7G3040 Salvia bowleyana HOM05D004456 ORTHO05D005287 2.2e-16 88.6 48 85.4
Migut.M01926 Erythranthe guttata HOM05D004456 ORTHO05D005287 2.8e-16 88.2 51 82.4
FvH4_3g14110 Fragaria vesca HOM05D004456 ORTHO05D005287 2.8e-16 88.2 51 80.4
FAN11G1980 Fragaria x ananassa HOM05D004456 ORTHO05D005287 2.8e-16 88.2 51 80.4
Sc17g0004630 Simmondsia chinensis HOM05D004456 ORTHO05D005287 2.8e-16 88.2 60 71.7
ATR0618G343 Amborella trichopoda HOM05D004456 ORTHO05D005287 3.7e-16 87.8 60 73.3
FAN16G3308 Fragaria x ananassa HOM05D004456 ORTHO05D005287 3.7e-16 87.8 51 78.4
HPP92_025894 Vanilla planifolia HOM05D004456 ORTHO05D005287 3.7e-16 87.8 48 85.4
CAN.G79.42 Capsicum annuum HOM05D004456 ORTHO05D005287 4.8e-16 87.4 63 68.3
vmacro03391 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 6.3e-16 87.0 51 80.4
EL10Ac4g09241 Beta vulgaris HOM05D004456 ORTHO05D005287 8.2e-16 86.7 62 69.4
Migut.M01892 Erythranthe guttata HOM05D004456 ORTHO05D005287 8.2e-16 86.7 51 80.4
EL10Ac1g00574 Beta vulgaris HOM05D004456 ORTHO05D005287 1.4e-15 85.9 48 83.3
Rhsim05G0148000 Rhododendron simsii HOM05D004456 ORTHO05D005287 1.4e-15 85.9 51 78.4
AUR62005032 Chenopodium quinoa HOM05D004456 ORTHO05D005287 1.8e-15 85.5 62 71.0
RcHm_v2.0_Chr5g0023421 Rosa chinensis HOM05D004456 ORTHO05D005287 1.8e-15 85.5 51 76.5
Zm00001eb154030 Zea mays HOM05D004456 ORTHO05D005287 1.8e-15 85.5 50 78.0
FAN21G1444 Fragaria x ananassa HOM05D004456 ORTHO05D005287 2.4e-15 85.1 51 78.4
AUR62000936 Chenopodium quinoa HOM05D004456 ORTHO05D005287 2.0e-14 82.0 62 69.4
SHI24419 Sapria himalayana HOM05D004456 ORTHO05D005287 2.6e-14 81.6 54 72.2
Nn7g36646 Nelumbo nucifera HOM05D004456 ORTHO05D005287 1.0e-13 79.7 56 71.4
PGR142G3851 Punica granatum HOM05D004456 ORTHO05D005287 1.2e-11 72.8 48 72.9
EL10Ac9g22335 Beta vulgaris HOM05D004456 ORTHO05D005287 1.6e-11 72.4 62 61.3
Mapoly0002s0127 Marchantia polymorpha HOM05D004456 ORTHO05D005287 1.0e-10 69.7 44 75.0
Pp3c20_1830 Physcomitrium patens HOM05D004456 ORTHO05D005287 1.0e-10 69.7 44 75.0
Solyc09g055460.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 2.2e-08 62.0 51 58.8
AagrBONN_evm.TU.Sc2ySwM_368.929 Anthoceros agrestis HOM05D004456 ORTHO05D005287 4.8e-08 60.8 44 65.9
AagrBONN_evm.TU.Sc2ySwM_228.5758 Anthoceros agrestis HOM05D004456 ORTHO05D005287 8.2e-08 60.1 45 64.4
SMO358G0062 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 8.2e-08 60.1 57 54.4


User provided reference genes

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