Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G095000 Populus trichocarpa HOM05D004767 ORTHO05D005674 4.2e-198 694.5 349 100.0
Potri.017G120100 Populus trichocarpa HOM05D004767 ORTHO05D005674 7.4e-187 657.1 349 94.3
Sabra17G0099100 Salix brachista HOM05D004767 ORTHO05D005674 3.0e-172 608.6 356 88.2
Manes.02G116500 Manihot esculenta HOM05D004767 ORTHO05D005674 1.9e-166 589.3 350 82.6
TAR381G0314 Trochodendron aralioides HOM05D004767 ORTHO05D005674 1.2e-152 543.5 351 76.4
TAR625G0043 Trochodendron aralioides HOM05D004767 ORTHO05D005674 2.6e-152 542.3 353 76.2
Nn6g31627 Nelumbo nucifera HOM05D004767 ORTHO05D005674 2.9e-151 538.9 353 75.9
RcHm_v2.0_Chr3g0480691 Rosa chinensis HOM05D004767 ORTHO05D005674 1.9e-150 536.2 351 74.9
FAN02G2069 Fragaria x ananassa HOM05D004767 ORTHO05D005674 2.5e-150 535.8 350 75.1
Glyma.10G129800 Glycine max HOM05D004767 ORTHO05D005674 2.5e-150 535.8 353 73.9
PGR102G1152 Punica granatum HOM05D004767 ORTHO05D005674 5.5e-150 534.6 352 75.9
Nitab4.5_0000235g0120 Nicotiana tabacum HOM05D004767 ORTHO05D005674 7.2e-150 534.3 352 73.6
FAN09G1063 Fragaria x ananassa HOM05D004767 ORTHO05D005674 1.6e-149 533.1 350 74.9
Cpa.g.sc365.7 Carica papaya HOM05D004767 ORTHO05D005674 3.6e-149 531.9 352 74.4
SGA_v2.0_scaffold108G30887 Striga asiatica HOM05D004767 ORTHO05D005674 6.1e-149 531.2 352 73.6
FvH4_6g22900 Fragaria vesca HOM05D004767 ORTHO05D005674 7.9e-149 530.8 350 74.6
CiPaw.03G094400 Carya illinoinensis HOM05D004767 ORTHO05D005674 1.0e-148 530.4 352 75.3
MD12G1063000 Malus domestica HOM05D004767 ORTHO05D005674 1.8e-148 529.6 351 72.6
TWI73G0530 Tripterygium wilfordii HOM05D004767 ORTHO05D005674 1.8e-148 529.6 351 75.8
FAN14G1715 Fragaria x ananassa HOM05D004767 ORTHO05D005674 3.0e-148 528.9 350 74.3
Peaxi162Scf00431g00415 Petunia axillaris HOM05D004767 ORTHO05D005674 5.2e-148 528.1 352 73.3
Prupe.7G070600 Prunus persica HOM05D004767 ORTHO05D005674 5.2e-148 528.1 351 72.4
Eucgr.H00074 Eucalyptus grandis HOM05D004767 ORTHO05D005674 6.7e-148 527.7 351 73.5
Oeu010411.1 Olea europaea HOM05D004767 ORTHO05D005674 6.7e-148 527.7 352 74.7
QL10p048860 Quercus lobata HOM05D004767 ORTHO05D005674 5.7e-147 524.6 351 72.9
VMungo1127G0990 Vigna mungo HOM05D004767 ORTHO05D005674 7.4e-147 524.2 352 71.3
MSTRG.16702 Avicennia marina HOM05D004767 ORTHO05D005674 1.3e-146 523.5 352 73.9
GSVIVG01017458001 Vitis vinifera HOM05D004767 ORTHO05D005674 1.7e-146 523.1 350 76.0
Lalb_Chr05g0214971 Lupinus albus HOM05D004767 ORTHO05D005674 2.2e-146 522.7 353 72.5
Glyma.12G025800 Glycine max HOM05D004767 ORTHO05D005674 3.7e-146 521.9 349 72.5
PGSC0003DMG400003462 Solanum tuberosum HOM05D004767 ORTHO05D005674 6.3e-146 521.2 352 72.2
GSVIVG01020926001 Vitis vinifera HOM05D004767 ORTHO05D005674 6.3e-146 521.2 350 75.4
COL.COLO4_35713 Corchorus olitorius HOM05D004767 ORTHO05D005674 8.2e-146 520.8 349 74.5
Nitab4.5_0006401g0010 Nicotiana tabacum HOM05D004767 ORTHO05D005674 8.2e-146 520.8 334 74.9
CANSAT54G2063 Cannabis sativa HOM05D004767 ORTHO05D005674 1.8e-145 519.6 329 76.6
Solyc02g038750.3 Solanum lycopersicum HOM05D004767 ORTHO05D005674 1.8e-145 519.6 352 72.2
Sopen02g012180 Solanum pennellii HOM05D004767 ORTHO05D005674 5.3e-145 518.1 352 71.6
Lj1g0021179 Lotus japonicus HOM05D004767 ORTHO05D005674 7.0e-145 517.7 352 70.7
Duzib264G0649 Durio zibethinus HOM05D004767 ORTHO05D005674 9.1e-145 517.3 353 72.5
Lalb_Chr09g0324851 Lupinus albus HOM05D004767 ORTHO05D005674 9.1e-145 517.3 352 72.2
TPR.G26773 Trifolium pratense HOM05D004767 ORTHO05D005674 8.5e-143 510.8 361 69.8
Medtr4g111810 Medicago truncatula HOM05D004767 ORTHO05D005674 1.5e-142 510.0 360 69.7
Phvul.011G028400 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.9e-142 509.6 352 70.5
Gorai.012G034000 Gossypium raimondii HOM05D004767 ORTHO05D005674 2.5e-142 509.2 354 71.8
Thecc.01G130700 Theobroma cacao HOM05D004767 ORTHO05D005674 1.6e-141 506.5 329 74.8
Psat1g185000 Pisum sativum HOM05D004767 ORTHO05D005674 3.6e-141 505.4 360 70.0
MD14G1063600 Malus domestica HOM05D004767 ORTHO05D005674 6.1e-141 504.6 353 69.7
Aqoxy6G02991 Aquilegia oxysepala HOM05D004767 ORTHO05D005674 1.0e-140 503.8 351 70.1
TPR.G18695 Trifolium pratense HOM05D004767 ORTHO05D005674 3.0e-140 502.3 361 69.3
Gohir.D04G022900 Gossypium hirsutum HOM05D004767 ORTHO05D005674 9.7e-139 497.3 354 70.6
Medtr4g077783 Medicago truncatula HOM05D004767 ORTHO05D005674 9.7e-139 497.3 336 72.0
THA.LOC104816808 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 1.3e-138 496.9 356 70.2
Gohir.A05G385700 Gossypium hirsutum HOM05D004767 ORTHO05D005674 4.8e-138 495.0 354 70.3
arahy.Tifrunner.gnm1.ann1.AK1NBZ Arachis hypogaea HOM05D004767 ORTHO05D005674 1.4e-137 493.4 355 70.1
THA.LOC104820618 Tarenaya hassleriana HOM05D004767 ORTHO05D005674 7.0e-137 491.1 353 69.1
PSO017G2362 Papaver somniferum HOM05D004767 ORTHO05D005674 1.2e-136 490.3 351 68.7
HanXRQChr15g0489741 Helianthus annuus HOM05D004767 ORTHO05D005674 1.6e-136 490.0 354 68.4
arahy.Tifrunner.gnm1.ann1.BE8FK9 Arachis hypogaea HOM05D004767 ORTHO05D005674 1.3e-135 486.9 405 62.7
Atru.chr5.1742 Acer truncatum HOM05D004767 ORTHO05D005674 1.7e-135 486.5 349 68.8
Cc07_g12190 Coffea canephora HOM05D004767 ORTHO05D005674 3.8e-135 485.3 289 80.6
Hund21306 Selenicereus undatus HOM05D004767 ORTHO05D005674 3.8e-135 485.3 312 75.3
Migut.B00408 Erythranthe guttata HOM05D004767 ORTHO05D005674 6.5e-135 484.6 354 68.9
Ca_02533_v3 Cicer arietinum L. HOM05D004767 ORTHO05D005674 2.5e-134 482.6 358 67.3
COL.COLO4_38041 Corchorus olitorius HOM05D004767 ORTHO05D005674 2.7e-133 479.2 307 77.2
Sc03g0004110 Simmondsia chinensis HOM05D004767 ORTHO05D005674 1.4e-132 476.9 350 67.7
ClCG10G013460 Citrullus lanatus HOM05D004767 ORTHO05D005674 5.2e-132 474.9 315 72.7
DCAR_019301 Daucus carota HOM05D004767 ORTHO05D005674 1.2e-131 473.8 338 68.0
SalBow6G2358 Salvia bowleyana HOM05D004767 ORTHO05D005674 5.7e-131 471.5 362 66.3
EL10Ac3g07307 Beta vulgaris HOM05D004767 ORTHO05D005674 9.8e-131 470.7 352 65.6
Sed0012135 Sechium edule HOM05D004767 ORTHO05D005674 1.3e-130 470.3 318 72.3
Lj4C240T4 Lonicera japonica HOM05D004767 ORTHO05D005674 1.7e-130 469.9 354 67.2
Sed0020265 Sechium edule HOM05D004767 ORTHO05D005674 1.7e-130 469.9 315 71.1
SalBow6G5765 Salvia bowleyana HOM05D004767 ORTHO05D005674 8.3e-130 467.6 362 66.3
ECA233G4977 Erigeron canadensis HOM05D004767 ORTHO05D005674 1.4e-129 466.8 358 65.1
RcHm_v2.0_Chr4g0410631 Rosa chinensis HOM05D004767 ORTHO05D005674 5.9e-128 461.5 352 66.5
TAR625G0966 Trochodendron aralioides HOM05D004767 ORTHO05D005674 5.9e-128 461.5 329 71.7
Hma1.2p1_0085F.1_g044390 Hydrangea macrophylla HOM05D004767 ORTHO05D005674 1.0e-127 460.7 373 65.1
EL10Ac8g19950 Beta vulgaris HOM05D004767 ORTHO05D005674 2.2e-127 459.5 311 69.8
Rhsim08G0026000 Rhododendron simsii HOM05D004767 ORTHO05D005674 2.2e-127 459.5 380 63.7
SalBow2G0232 Salvia bowleyana HOM05D004767 ORTHO05D005674 2.2e-127 459.5 353 66.0
AT2G34260 Arabidopsis thaliana HOM05D004767 ORTHO05D005674 6.5e-127 458.0 313 70.6
unitig_61.g26025 Utricularia gibba HOM05D004767 ORTHO05D005674 8.5e-127 457.6 356 64.3
CDE02G0197 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 9.5e-126 454.1 355 63.7
Carub.0004s1593 Capsella rubella HOM05D004767 ORTHO05D005674 1.6e-125 453.4 313 70.0
CDE08G0085 Ceratophyllum demersum HOM05D004767 ORTHO05D005674 1.6e-125 453.4 355 63.9
PSO170G0853 Papaver somniferum HOM05D004767 ORTHO05D005674 2.1e-125 453.0 351 64.7
CARHR128360 Cardamine hirsuta HOM05D004767 ORTHO05D005674 1.0e-124 450.7 313 68.7
AUR62012542 Chenopodium quinoa HOM05D004767 ORTHO05D005674 1.4e-124 450.3 289 73.7
BcaC02g11487 Brassica carinata HOM05D004767 ORTHO05D005674 3.0e-124 449.1 299 70.6
Sp4g16550 Schrenkiella parvula HOM05D004767 ORTHO05D005674 3.0e-124 449.1 312 69.9
Aa31LG9G14020 Aethionema arabicum HOM05D004767 ORTHO05D005674 1.5e-123 446.8 355 64.2
C04p14860 Brassica napus HOM05D004767 ORTHO05D005674 1.5e-123 446.8 299 70.2
C04p63650 Brassica napus HOM05D004767 ORTHO05D005674 1.5e-123 446.8 299 71.2
BcaB02g09562 Brassica carinata HOM05D004767 ORTHO05D005674 4.4e-123 445.3 297 70.4
A05p11370 Brassica napus HOM05D004767 ORTHO05D005674 4.4e-123 445.3 299 69.9
BraA05t20086Z Brassica rapa HOM05D004767 ORTHO05D005674 4.4e-123 445.3 299 69.9
BolC4t23059H Brassica oleracea HOM05D004767 ORTHO05D005674 5.7e-123 444.9 299 69.9
BcaB06g28745 Brassica carinata HOM05D004767 ORTHO05D005674 9.8e-123 444.1 314 68.2
BraA04t18130Z Brassica rapa HOM05D004767 ORTHO05D005674 1.7e-122 443.4 299 70.6
Lsat_1_v5_gn_8_114040 Lactuca sativa HOM05D004767 ORTHO05D005674 4.1e-121 438.7 343 63.3
HPP92_003941 Vanilla planifolia HOM05D004767 ORTHO05D005674 5.4e-121 438.3 355 62.5
Psat1g210160 Pisum sativum HOM05D004767 ORTHO05D005674 7.8e-120 434.5 272 76.8
MELO3C026614.2 Cucumis melo HOM05D004767 ORTHO05D005674 1.3e-119 433.7 314 66.9
Os07g0660700 Oryza sativa ssp. japonica HOM05D004767 ORTHO05D005674 2.3e-119 433.0 350 61.4
Actinidia28754 Actinidia chinensis HOM05D004767 ORTHO05D005674 1.2e-117 427.2 355 64.2
vmacro18476 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 6.8e-116 421.4 333 64.3
Zm00001eb349300 Zea mays HOM05D004767 ORTHO05D005674 2.9e-114 416.0 353 58.4
Lj3A907T66 Lonicera japonica HOM05D004767 ORTHO05D005674 2.0e-112 409.8 367 58.6
Thhalv10016919m.g Eutrema salsugineum HOM05D004767 ORTHO05D005674 1.1e-110 404.1 299 65.6
AL4G30210 Arabidopsis lyrata HOM05D004767 ORTHO05D005674 1.5e-107 393.7 365 57.0
Haze_03669 Corylus avellana HOM05D004767 ORTHO05D005674 3.2e-105 386.0 306 65.4
CsaV3_3G043180 Cucumis sativus L. HOM05D004767 ORTHO05D005674 5.0e-103 378.6 312 59.6
Dinv40217 Davidia involucrata HOM05D004767 ORTHO05D005674 4.0e-100 369.0 230 77.0
Glyma.11G099900 Glycine max HOM05D004767 ORTHO05D005674 8.9e-100 367.9 301 61.1
CSS0049016 Camellia sinensis var. sinensis HOM05D004767 ORTHO05D005674 5.8e-99 365.2 290 64.5
Phvul.005G015600 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 4.1e-97 359.0 307 59.3
Mapoly0040s0029 Marchantia polymorpha HOM05D004767 ORTHO05D005674 9.2e-97 357.8 324 51.2
AagrBONN_evm.TU.Sc2ySwM_344.1647 Anthoceros agrestis HOM05D004767 ORTHO05D005674 8.6e-95 351.3 296 55.4
Cfa006688 Carpinus fangiana HOM05D004767 ORTHO05D005674 2.8e-93 346.3 266 66.9
Phvul.005G015700 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 4.7e-93 345.5 303 57.8
AUR62014654 Chenopodium quinoa HOM05D004767 ORTHO05D005674 8.1e-93 344.7 312 58.0
SMO364G0336 Selaginella moellendorffii HOM05D004767 ORTHO05D005674 6.8e-92 341.7 354 50.8
Ah.09g236950 Amaranthus hybridus HOM05D004767 ORTHO05D005674 4.9e-90 335.5 318 54.1
A04p26260 Brassica napus HOM05D004767 ORTHO05D005674 4.6e-88 328.9 205 74.6
AUR62044118 Chenopodium quinoa HOM05D004767 ORTHO05D005674 2.3e-87 326.6 289 58.5
CBR_g37537 Chara braunii HOM05D004767 ORTHO05D005674 3.8e-74 282.7 328 43.0
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 8.1e-69 265.0 324 43.5
Medtr1g076780 Medicago truncatula HOM05D004767 ORTHO05D005674 1.1e-60 238.0 156 71.2
SHI13610 Sapria himalayana HOM05D004767 ORTHO05D005674 1.8e-60 237.3 267 48.7
Glyma.20G080900 Glycine max HOM05D004767 ORTHO05D005674 5.8e-59 232.3 144 77.1
Oeu036465.1 Olea europaea HOM05D004767 ORTHO05D005674 1.9e-49 200.7 289 48.1
ATR0680G041 Amborella trichopoda HOM05D004767 ORTHO05D005674 2.1e-48 197.2 155 58.1
SEGI_28078 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 6.1e-48 195.7 138 65.9
Psat6g227720 Pisum sativum HOM05D004767 ORTHO05D005674 1.5e-46 191.0 148 64.2
Cre02.g113250 Chlamydomonas reinhardtii HOM05D004767 ORTHO05D005674 2.2e-42 177.2 245 38.0
PRCOL_00000722 Prasinoderma coloniale HOM05D004767 ORTHO05D005674 2.9e-42 176.8 293 36.2
Psat6g227760 Pisum sativum HOM05D004767 ORTHO05D005674 1.4e-41 174.5 140 62.9
Pp3c5_17020 Physcomitrium patens HOM05D004767 ORTHO05D005674 1.1e-38 164.9 324 32.4
Phvul.011G028501 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 8.2e-37 158.7 116 67.2
Sabra17G0099200 Salix brachista HOM05D004767 ORTHO05D005674 1.7e-34 151.0 79 93.7
QL07p001807 Quercus lobata HOM05D004767 ORTHO05D005674 1.9e-33 147.5 153 50.3
ATR0231G001 Amborella trichopoda HOM05D004767 ORTHO05D005674 4.4e-30 136.3 107 64.5
BolC4t27833H Brassica oleracea HOM05D004767 ORTHO05D005674 4.2e-25 119.8 270 35.2
SEGI_20710 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 4.8e-21 106.3 94 53.2
Phvul.011G028300 Phaseolus vulgaris HOM05D004767 ORTHO05D005674 1.2e-14 85.1 46 80.4
SEGI_27353 Sequoiadendron giganteum HOM05D004767 ORTHO05D005674 1.2e-14 85.1 62 61.3
Cc11_g01140 Coffea canephora HOM05D004767 ORTHO05D005674 1.3e-13 81.6 48 77.1
Cc11_g01130 Coffea canephora HOM05D004767 ORTHO05D005674 7.0e-12 75.9 45 77.8
Lsat_1_v5_gn_6_103760 Lactuca sativa HOM05D004767 ORTHO05D005674 2.0e-11 74.3 58 58.6
vmacro07517 Vaccinium macrocarpon HOM05D004767 ORTHO05D005674 2.0e-11 74.3 54 66.7
GSVIVG01020113001 Vitis vinifera HOM05D004767 ORTHO05D005674 2.7e-11 73.9 53 69.8
Actinidia09820 Actinidia chinensis HOM05D004767 ORTHO05D005674 1.3e-10 71.6 56 60.7
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 1.7e-10 71.2 148 29.7
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 5.0e-10 69.7 249 25.7
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 1.1e-09 68.6 148 29.1
Actinidia28377 Actinidia chinensis HOM05D005323 ORTHO05D006820 6.1e-08 62.8 238 23.9
RcHm_v2.0_Chr5g0032061 Rosa chinensis HOM05D004767 ORTHO05D005674 8.0e-08 62.4 33 78.8
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 6.8e-07 59.3 150 25.3
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 1.2e-06 58.5 150 26.0
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 1.5e-06 58.2 261 20.7
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 1.5e-06 58.2 150 24.7
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 1.5e-06 58.2 241 21.6
Rhsim08G0181600 Rhododendron simsii HOM05D000464 ORTHO05D006292 4.4e-06 56.6 263 20.9
Actinidia27124 Actinidia chinensis HOM05D005323 ORTHO05D006820 5.7e-06 56.2 292 19.5
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 5.7e-06 56.2 115 27.8
SMO356G0696 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 5.7e-06 56.2 299 21.7
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 5.7e-06 56.2 109 30.3
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 7.5e-06 55.8 110 28.2
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 7.5e-06 55.8 145 24.1
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 9.8e-06 55.5 115 27.8
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 9.8e-06 55.5 235 21.7


User provided reference genes

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