Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G089200 Populus trichocarpa HOM05D003685 ORTHO05D003168 1.7e-25 119.0 82 100.0
Potri.017G126400 Populus trichocarpa HOM05D003685 ORTHO05D003168 3.0e-22 108.2 82 90.2
Sabra17G0106100 Salix brachista HOM05D003685 ORTHO05D003168 2.4e-19 98.6 76 86.8
TWI53G1623 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 3.1e-19 98.2 84 64.3
TWI77G0488 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 6.9e-19 97.1 84 83.3
TWI74G1588 Tripterygium wilfordii HOM05D003685 ORTHO05D003168 2.6e-18 95.1 84 63.1
Manes.01G116500 Manihot esculenta HOM05D003685 ORTHO05D003168 7.6e-18 93.6 81 60.5
Manes.17G064700 Manihot esculenta HOM05D003685 ORTHO05D003168 1.0e-17 93.2 79 62.0
Duzib133G0562 Durio zibethinus HOM05D003685 ORTHO05D003168 2.2e-17 92.0 83 81.9
PGR042G0188 Punica granatum HOM05D003685 ORTHO05D003168 1.1e-16 89.7 85 71.8
Cpa.g.sc116.33 Carica papaya HOM05D003685 ORTHO05D003168 1.9e-16 89.0 80 58.8
Ca_05785_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 2.5e-16 88.6 74 71.6
Ca_30988_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 2.5e-16 88.6 74 71.6
Thecc.04G119100 Theobroma cacao HOM05D003685 ORTHO05D003168 2.5e-16 88.6 84 58.3
COL.COLO4_15735 Corchorus olitorius HOM05D003685 ORTHO05D003168 3.2e-16 88.2 84 58.3
ClCG03G008650 Citrullus lanatus HOM05D003685 ORTHO05D003168 4.2e-16 87.8 85 55.3
CsaV3_5G024070 Cucumis sativus L. HOM05D000964 ORTHO05D003168 5.5e-16 87.4 79 55.7
Duzib211G0337 Durio zibethinus HOM05D003685 ORTHO05D003168 5.5e-16 87.4 79 58.2
MELO3C022853.2 Cucumis melo HOM05D003685 ORTHO05D003168 9.3e-16 86.7 85 54.1
Gohir.A11G160900 Gossypium hirsutum HOM05D003685 ORTHO05D003168 1.2e-15 86.3 79 55.7
Gohir.D11G167200 Gossypium hirsutum HOM05D003685 ORTHO05D003168 1.2e-15 86.3 79 55.7
Gorai.007G178300 Gossypium raimondii HOM05D003685 ORTHO05D003168 1.2e-15 86.3 79 55.7
Lj6g0007365 Lotus japonicus HOM05D003685 ORTHO05D003168 1.2e-15 86.3 85 65.9
AT3G03430 Arabidopsis thaliana HOM05D003685 ORTHO05D003168 1.6e-15 85.9 81 55.6
LjContig00141g0023457 Lotus japonicus HOM05D003685 ORTHO05D003168 1.6e-15 85.9 85 54.1
Manes.13G093900 Manihot esculenta HOM05D003685 ORTHO05D003168 1.6e-15 85.9 79 50.6
Sed0020121 Sechium edule HOM05D003685 ORTHO05D003168 1.6e-15 85.9 85 54.1
Atru.chr1.1843 Acer truncatum HOM05D003685 ORTHO05D003168 2.7e-15 85.1 81 53.1
TPR.G3491 Trifolium pratense HOM05D003685 ORTHO05D003168 2.7e-15 85.1 74 70.3
AUR62023181 Chenopodium quinoa HOM05D003685 ORTHO05D003168 3.5e-15 84.7 74 74.3
Hma1.2p1_0832F.1_g225520 Hydrangea macrophylla HOM05D003685 ORTHO05D003168 3.5e-15 84.7 81 54.3
THA.LOC104820836 Tarenaya hassleriana HOM05D003685 ORTHO05D003168 3.5e-15 84.7 81 54.3
AL3G13100 Arabidopsis lyrata HOM05D003685 ORTHO05D003168 4.6e-15 84.3 81 59.3
BcaB04g19369 Brassica carinata HOM05D003685 ORTHO05D003168 4.6e-15 84.3 81 61.7
Sed0024816 Sechium edule HOM05D003685 ORTHO05D003168 4.6e-15 84.3 79 54.4
CSS0039227 Camellia sinensis var. sinensis HOM05D003685 ORTHO05D003168 6.0e-15 84.0 86 54.7
Aa31LG5G13930 Aethionema arabicum HOM05D003685 ORTHO05D003168 7.9e-15 83.6 81 58.0
QL11p003870 Quercus lobata HOM05D003685 ORTHO05D003168 7.9e-15 83.6 80 55.0
BcaC01g04402 Brassica carinata HOM05D003685 ORTHO05D003168 1.0e-14 83.2 81 66.7
BcaC01g04406 Brassica carinata HOM05D003685 ORTHO05D003168 1.0e-14 83.2 81 66.7
C03p40520 Brassica napus HOM05D003685 ORTHO05D003168 1.0e-14 83.2 81 66.7
BolC3t16317H Brassica oleracea HOM05D003685 ORTHO05D003168 1.0e-14 83.2 81 66.7
BraA03t12499Z Brassica rapa HOM05D003685 ORTHO05D003168 1.0e-14 83.2 81 66.7
CSS0016349 Camellia sinensis var. sinensis HOM05D003685 ORTHO05D003168 1.0e-14 83.2 86 70.9
Phvul.008G234700 Phaseolus vulgaris HOM05D003685 ORTHO05D003168 1.0e-14 83.2 85 74.1
Sp3g02430 Schrenkiella parvula HOM05D003685 ORTHO05D003168 1.0e-14 83.2 81 58.0
Actinidia36369 Actinidia chinensis HOM05D003685 ORTHO05D003168 1.3e-14 82.8 86 54.7
Nitab4.5_0003855g0030 Nicotiana tabacum HOM05D003685 ORTHO05D003168 1.3e-14 82.8 74 56.8
Sc11g0008680 Simmondsia chinensis HOM05D003685 ORTHO05D003168 1.3e-14 82.8 86 52.3
Actinidia22789 Actinidia chinensis HOM05D000008 ORTHO05D000005 1.8e-14 82.4 86 53.5
Lalb_Chr10g0104461 Lupinus albus HOM05D003685 ORTHO05D003168 1.8e-14 82.4 86 50.0
Sc10g0000750 Simmondsia chinensis HOM05D003685 ORTHO05D003168 1.8e-14 82.4 74 58.1
AT5G17480 Arabidopsis thaliana HOM05D003685 ORTHO05D003168 2.3e-14 82.0 81 53.1
A03p33270 Brassica napus HOM05D003685 ORTHO05D003168 2.3e-14 82.0 81 64.2
CAN.G1061.44 Capsicum annuum HOM05D003685 ORTHO05D003168 2.3e-14 82.0 74 55.4
Cc07_g08080 Coffea canephora HOM05D003685 ORTHO05D003168 2.3e-14 82.0 81 53.1
Migut.L00461 Erythranthe guttata HOM05D003685 ORTHO05D003168 2.3e-14 82.0 74 68.9
Glyma.14G216000 Glycine max HOM05D003685 ORTHO05D003168 2.3e-14 82.0 74 78.4
MD09G1262700 Malus domestica HOM05D003685 ORTHO05D003168 2.3e-14 82.0 79 53.2
Medtr5g079470 Medicago truncatula HOM05D003685 ORTHO05D003168 2.3e-14 82.0 74 55.4
Oeu000910.1 Olea europaea HOM05D003685 ORTHO05D003168 2.3e-14 82.0 85 52.9
BolC1t05831H Brassica oleracea HOM05D003685 ORTHO05D003168 3.0e-14 81.6 81 66.7
arahy.Tifrunner.gnm1.ann1.20BG1F Arachis hypogaea HOM05D003685 ORTHO05D003168 3.9e-14 81.3 86 52.3
arahy.Tifrunner.gnm1.ann1.TR7VBX Arachis hypogaea HOM05D003685 ORTHO05D003168 3.9e-14 81.3 86 52.3
CARHR077450 Cardamine hirsuta HOM05D003685 ORTHO05D003168 3.9e-14 81.3 84 53.6
MD17G1257600 Malus domestica HOM05D003685 ORTHO05D003168 3.9e-14 81.3 79 54.4
Solyc02g091480.1 Solanum lycopersicum HOM05D003685 ORTHO05D003168 3.9e-14 81.3 74 55.4
Thhalv10015161m.g Eutrema salsugineum HOM05D003685 ORTHO05D003168 5.1e-14 80.9 81 53.1
Nn3g18248 Nelumbo nucifera HOM05D003685 ORTHO05D003168 5.1e-14 80.9 83 54.2
Psat2g041920 Pisum sativum HOM05D003685 ORTHO05D003168 5.1e-14 80.9 74 74.3
Sopen02g036100 Solanum pennellii HOM05D003685 ORTHO05D003168 5.1e-14 80.9 74 55.4
PGSC0003DMG400030652 Solanum tuberosum HOM05D003685 ORTHO05D003168 5.1e-14 80.9 74 55.4
DCAR_025870 Daucus carota HOM05D003685 ORTHO05D003168 6.7e-14 80.5 83 61.4
Glyma.02G245901 Glycine max HOM05D003685 ORTHO05D003168 6.7e-14 80.5 74 79.7
Lsat_1_v5_gn_3_81860 Lactuca sativa HOM05D003685 ORTHO05D003168 6.7e-14 80.5 83 53.0
Phvul.001G231100 Phaseolus vulgaris HOM05D003685 ORTHO05D003168 6.7e-14 80.5 86 66.3
SalBow7G2561 Salvia bowleyana HOM05D003685 ORTHO05D003168 6.7e-14 80.5 86 65.1
vmacro22373 Vaccinium macrocarpon HOM05D014992 ORTHO05D003168 6.7e-14 80.5 86 53.5
vmacro22897 Vaccinium macrocarpon HOM05D003685 ORTHO05D003168 6.7e-14 80.5 86 53.5
AL6G28560 Arabidopsis lyrata HOM05D003685 ORTHO05D003168 8.7e-14 80.1 81 51.9
SalBow3G2120 Salvia bowleyana HOM05D003685 ORTHO05D003168 8.7e-14 80.1 85 50.6
Solyc02g063340.1 Solanum lycopersicum HOM05D003685 ORTHO05D003168 8.7e-14 80.1 74 56.8
Sopen02g014410 Solanum pennellii HOM05D003685 ORTHO05D003168 8.7e-14 80.1 74 56.8
PGSC0003DMG400010392 Solanum tuberosum HOM05D003685 ORTHO05D003168 8.7e-14 80.1 74 56.8
BcaC05g30536 Brassica carinata HOM05D003685 ORTHO05D003168 1.1e-13 79.7 81 50.6
A05p43820 Brassica napus HOM05D003685 ORTHO05D003168 1.1e-13 79.7 81 50.6
C05p63400 Brassica napus HOM05D003685 ORTHO05D003168 1.1e-13 79.7 81 50.6
BolC5t35004H Brassica oleracea HOM05D003685 ORTHO05D003168 1.1e-13 79.7 81 50.6
BraA05t23119Z Brassica rapa HOM05D003685 ORTHO05D003168 1.1e-13 79.7 81 50.6
Nitab4.5_0000036g0480 Nicotiana tabacum HOM05D003685 ORTHO05D003168 1.1e-13 79.7 74 55.4
Sp6g26740 Schrenkiella parvula HOM05D003685 ORTHO05D003168 1.1e-13 79.7 81 51.9
CARHR195720 Cardamine hirsuta HOM05D003685 ORTHO05D003168 1.5e-13 79.3 81 51.9
CAN.G1067.5 Capsicum annuum HOM05D003685 ORTHO05D003168 1.9e-13 79.0 74 55.4
BcaC09g47746 Brassica carinata HOM05D003685 ORTHO05D003168 2.5e-13 78.6 81 65.4
Carub.0006s1571 Capsella rubella HOM05D003685 ORTHO05D003168 2.5e-13 78.6 81 50.6
AUR62023227 Chenopodium quinoa HOM05D003685 ORTHO05D003168 2.5e-13 78.6 74 70.3
Ciclev10013229m.g Citrus clementina HOM05D003685 ORTHO05D003168 2.5e-13 78.6 85 50.6
HanXRQChr14g0440341 Helianthus annuus HOM05D003685 ORTHO05D003168 2.5e-13 78.6 84 64.3
Gohir.A07G077100 Gossypium hirsutum HOM05D003685 ORTHO05D003168 3.3e-13 78.2 80 50.0
Gorai.001G086900 Gossypium raimondii HOM05D003685 ORTHO05D003168 3.3e-13 78.2 80 50.0
Prupe.3G160400 Prunus persica HOM05D003685 ORTHO05D003168 3.3e-13 78.2 86 48.8
ECA238G1186 Erigeron canadensis HOM05D003685 ORTHO05D003168 4.3e-13 77.8 83 65.1
Lalb_Chr20g0117001 Lupinus albus HOM05D003685 ORTHO05D003168 4.3e-13 77.8 85 49.4
Sabra04G0059800 Salix brachista HOM05D003685 ORTHO05D003168 5.7e-13 77.4 42 85.7
unitig_37.g12380 Utricularia gibba HOM05D000408 ORTHO05D000655 7.4e-13 77.0 74 52.7
Cfa002094 Carpinus fangiana HOM05D003685 ORTHO05D003168 9.6e-13 76.6 86 61.6
BraA01t04580Z Brassica rapa HOM05D003685 ORTHO05D003168 1.3e-12 76.3 81 67.9
BcaC05g30270 Brassica carinata HOM05D003685 ORTHO05D003168 1.6e-12 75.9 81 51.9
FvH4_1g28900 Fragaria vesca HOM05D003685 ORTHO05D003168 1.6e-12 75.9 79 48.1
FAN19G1718 Fragaria x ananassa HOM05D003685 ORTHO05D003168 1.6e-12 75.9 79 48.1
Gohir.D07G081800 Gossypium hirsutum HOM05D003685 ORTHO05D003168 1.6e-12 75.9 80 48.8
FAN23G1531 Fragaria x ananassa HOM05D003685 ORTHO05D003168 2.1e-12 75.5 79 46.8
HanXRQChr07g0193541 Helianthus annuus HOM05D003685 ORTHO05D003168 2.1e-12 75.5 83 69.9
Aqoxy3G00097 Aquilegia oxysepala HOM05D003685 ORTHO05D003168 2.8e-12 75.1 83 69.9
Lalb_Chr15g0084851 Lupinus albus HOM05D003685 ORTHO05D003168 2.8e-12 75.1 85 47.1
Lalb_Chr18g0053371 Lupinus albus HOM05D003685 ORTHO05D003168 2.8e-12 75.1 85 47.1
Rhsim08G0086900 Rhododendron simsii HOM05D003685 ORTHO05D003168 2.8e-12 75.1 79 49.4
PGR004G0993 Punica granatum HOM05D003685 ORTHO05D003168 3.7e-12 74.7 79 49.4
RcHm_v2.0_Chr3g0493401 Rosa chinensis HOM05D003685 ORTHO05D003168 4.8e-12 74.3 79 48.1
PSO017G5026 Papaver somniferum HOM05D003685 ORTHO05D003168 6.2e-12 73.9 79 68.4
PSO478G3570 Papaver somniferum HOM05D003685 ORTHO05D003168 6.2e-12 73.9 79 68.4
HanXRQChr15g0475431 Helianthus annuus HOM05D003685 ORTHO05D003168 8.2e-12 73.6 80 48.8
BcaC03g13523 Brassica carinata HOM05D003685 ORTHO05D003168 1.1e-11 73.2 82 65.9
A02p04230 Brassica napus HOM05D003685 ORTHO05D003168 1.1e-11 73.2 82 65.9
C02p09110 Brassica napus HOM05D003685 ORTHO05D003168 1.1e-11 73.2 82 65.9
BolC2t06822H Brassica oleracea HOM05D003685 ORTHO05D003168 1.1e-11 73.2 82 65.9
BraA02t05386Z Brassica rapa HOM05D003685 ORTHO05D003168 1.1e-11 73.2 82 65.9
Zm00001eb175870 Zea mays HOM05D003685 ORTHO05D003168 1.1e-11 73.2 76 64.5
CiPaw.04G046300 Carya illinoinensis HOM05D003685 ORTHO05D003168 1.4e-11 72.8 78 48.7
Lalb_Chr17g0346151 Lupinus albus HOM05D003685 ORTHO05D003168 1.8e-11 72.4 74 50.0
TAR629G2979 Trochodendron aralioides HOM05D003685 ORTHO05D003168 2.4e-11 72.0 76 72.4
Glyma.11G217300 Glycine max HOM05D003685 ORTHO05D003168 3.1e-11 71.6 95 52.6
Lsat_1_v5_gn_2_79940 Lactuca sativa HOM05D003685 ORTHO05D003168 3.1e-11 71.6 77 42.9
Os08g0560700 Oryza sativa ssp. japonica HOM05D003685 ORTHO05D003168 5.3e-11 70.9 76 67.1
CiPaw.03G069700 Carya illinoinensis HOM05D003685 ORTHO05D003168 9.0e-11 70.1 85 45.9
Zm00001eb039230 Zea mays HOM05D003685 ORTHO05D003168 9.0e-11 70.1 76 61.8
BraA10t44250Z Brassica rapa HOM05D003685 ORTHO05D003168 1.2e-10 69.7 81 46.9
ECA246G1160 Erigeron canadensis HOM05D003685 ORTHO05D003168 1.2e-10 69.7 83 47.0
HPP92_005033 Vanilla planifolia HOM05D003685 ORTHO05D003168 1.2e-10 69.7 76 67.1
MBI12_g30397_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D003168 2.0e-10 68.9 73 47.9
Haze_16359 Corylus avellana HOM05D003685 ORTHO05D003168 2.6e-10 68.6 81 48.1
HPP92_003364 Vanilla planifolia HOM05D003685 ORTHO05D003168 4.5e-10 67.8 77 40.3
MBI04_g34112_MAGBIO Magnolia biondii HOM05D003685 ORTHO05D003168 1.7e-09 65.9 74 41.9
Nitab4.5_0009638g0020 Nicotiana tabacum HOM05D003685 ORTHO05D003168 1.7e-09 65.9 64 51.6
Dinv14887 Davidia involucrata HOM05D000559 ORTHO05D000596 3.8e-09 64.7 78 44.9
HanXRQChr16g0530831 Helianthus annuus HOM05D003685 ORTHO05D003168 3.8e-09 64.7 75 65.3
Nitab4.5_0002664g0060 Nicotiana tabacum HOM05D003685 ORTHO05D003168 8.4e-09 63.5 62 51.6
Lj4g0022454 Lotus japonicus HOM05D003685 ORTHO05D003168 1.1e-08 63.2 79 40.5
Peaxi162Scf02113g00006 Petunia axillaris HOM05D003685 ORTHO05D003168 1.1e-08 63.2 62 51.6
QL03p039371 Quercus lobata HOM05D003685 ORTHO05D003168 1.1e-08 63.2 82 53.7
Lsat_1_v5_gn_4_156660 Lactuca sativa HOM05D003685 ORTHO05D003168 1.9e-08 62.4 83 45.8
Peaxi162Scf00911g00004 Petunia axillaris HOM05D003685 ORTHO05D003168 2.5e-08 62.0 62 50.0
arahy.Tifrunner.gnm1.ann1.3WH4I0 Arachis hypogaea HOM05D000001 ORTHO05D009971 4.2e-08 61.2 74 40.5
arahy.Tifrunner.gnm1.ann1.YU644E Arachis hypogaea HOM05D000001 ORTHO05D009971 4.2e-08 61.2 74 40.5
Lj4g0014778 Lotus japonicus HOM05D003685 ORTHO05D003168 4.2e-08 61.2 76 39.5
MD05G1258400 Malus domestica HOM05D003685 ORTHO05D003168 4.2e-08 61.2 81 40.7
Lalb_Chr12g0209331 Lupinus albus HOM05D003685 ORTHO05D003168 7.1e-08 60.5 79 40.5
Sed0006736 Sechium edule HOM05D003685 ORTHO05D003168 7.1e-08 60.5 76 47.4
MELO3C030156.2 Cucumis melo HOM05D003685 ORTHO05D003168 1.2e-07 59.7 78 39.7
FvH4_3g11850 Fragaria vesca HOM05D003685 ORTHO05D003168 1.2e-07 59.7 78 41.0
Glyma.05G138000 Glycine max HOM05D003685 ORTHO05D003168 2.1e-07 58.9 79 62.0
Nn4g24200 Nelumbo nucifera HOM05D003685 ORTHO05D003168 2.1e-07 58.9 80 63.8
ClCG05G011030 Citrullus lanatus HOM05D003685 ORTHO05D003168 7.9e-07 57.0 76 69.7
ClCG08G003720 Citrullus lanatus HOM05D003685 ORTHO05D003168 7.9e-07 57.0 82 40.2
CsaV3_3G021560 Cucumis sativus L. HOM05D003685 ORTHO05D003168 2.3e-06 55.5 76 67.1
Glyma.08G093000 Glycine max HOM05D003685 ORTHO05D003168 2.3e-06 55.5 76 60.5
CsaV3_6G003680 Cucumis sativus L. HOM05D003685 ORTHO05D003168 3.0e-06 55.1 79 40.5
Lalb_Chr07g0187881 Lupinus albus HOM05D003685 ORTHO05D003168 5.1e-06 54.3 74 33.8
Psat7g084080 Pisum sativum HOM05D003685 ORTHO05D003168 6.7e-06 53.9 79 58.2
RcHm_v2.0_Chr5g0019281 Rosa chinensis HOM05D003685 ORTHO05D003168 6.7e-06 53.9 78 34.6
Ca_11575_v3 Cicer arietinum L. HOM05D003685 ORTHO05D003168 8.7e-06 53.5 75 54.7


User provided reference genes

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