Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1799.6 926 100.0
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1729.9 947 95.2
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1414.1 914 79.6
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1350.9 917 76.4
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1345.1 916 75.0
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1342.4 1000 71.6
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1328.9 926 74.4
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1323.1 924 75.0
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1322.4 904 75.1
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1318.1 927 74.1
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1313.1 926 73.5
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1309.3 909 74.6
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1306.6 913 74.5
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1300.8 911 72.9
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1300.0 917 73.0
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1299.3 926 72.9
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1288.9 926 72.4
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1288.9 909 74.0
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1285.0 909 73.6
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1282.3 940 71.3
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1277.3 911 72.4
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1270.0 940 71.1
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1253.4 912 71.1
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1248.8 922 70.7
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 0.0e+00 1248.0 1083 63.8
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1246.1 952 68.6
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1243.0 915 70.4
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1241.1 923 70.6
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1237.2 850 74.7
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1234.2 915 70.7
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1226.1 911 71.5
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1223.4 911 70.0
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1221.5 915 68.5
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1216.1 923 69.3
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1214.9 913 69.4
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1213.4 926 67.2
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1210.3 1090 61.2
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1208.4 913 69.3
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 0.0e+00 1206.4 904 69.9
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1202.6 863 71.8
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 0.0e+00 1202.2 932 68.7
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1201.4 869 70.8
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1200.7 912 66.7
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1198.0 908 68.5
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1195.3 908 68.0
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1182.2 902 67.6
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1172.5 926 64.6
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1169.8 924 68.0
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1153.3 958 63.6
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1151.3 925 64.4
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1139.4 904 65.5
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 0.0e+00 1137.9 918 65.4
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 0.0e+00 1129.8 872 67.5
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 0.0e+00 1129.8 911 65.6
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 0.0e+00 1128.6 902 65.1
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 0.0e+00 1117.1 772 75.4
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 0.0e+00 1111.7 914 65.2
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1110.9 914 62.6
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1109.4 906 63.2
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1109.4 912 63.0
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1109.0 906 63.8
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1109.0 912 63.2
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 0.0e+00 1108.6 904 63.5
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1104.7 906 63.7
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1102.8 906 63.9
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 0.0e+00 1102.0 935 65.5
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1101.3 912 62.8
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 0.0e+00 1096.6 903 63.6
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 0.0e+00 1094.3 915 63.7
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 0.0e+00 1090.9 911 62.6
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1080.1 912 61.8
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 1.9e-311 1072.4 981 58.0
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 4.8e-310 1067.8 904 61.9
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 3.4e-308 1061.6 904 61.6
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 3.2e-306 1055.0 861 64.8
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 2.1e-305 1052.4 932 60.1
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 5.3e-301 1037.7 869 62.4
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.3e-299 1033.1 917 59.4
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 1.0e-296 1023.5 750 69.7
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 1.8e-296 1022.7 1013 55.8
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 2.0e-295 1019.2 908 59.3
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 2.8e-294 1015.4 910 61.1
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 1.4e-293 1013.1 925 58.2
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 3.1e-285 985.3 1146 49.9
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 3.0e-280 968.8 730 70.8
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 5.7e-279 964.5 915 56.3
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 4.1e-277 958.4 732 69.0
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 1.8e-272 943.0 959 53.8
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 3.6e-265 918.7 920 55.3
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 2.6e-263 912.5 641 74.9
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 3.7e-254 882.1 632 70.1
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 8.3e-254 880.9 923 53.3
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 1.0e-251 874.0 763 60.4
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.3e-251 873.6 729 61.9
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 4.9e-246 855.1 602 72.6
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.5e-210 737.3 529 74.5
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 7.4e-210 734.9 571 65.8
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 2.3e-203 713.4 582 64.8
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 3.4e-183 646.4 477 70.4
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 3.8e-174 616.3 430 73.5
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 3.0e-171 606.7 915 41.4
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.5e-170 604.4 546 60.1
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 6.1e-164 582.4 913 42.5
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 5.3e-160 569.3 436 67.4
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 5.0e-158 562.8 473 66.2
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 1.5e-149 534.6 604 51.3
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 6.8e-147 525.8 927 38.1
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 6.8e-147 525.8 901 38.6
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 2.0e-146 524.2 401 67.3
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 2.6e-130 470.7 922 35.8
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 7.8e-127 459.1 302 79.8
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 2.5e-125 454.1 623 44.6
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 1.3e-108 398.7 340 60.9
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 4.9e-105 386.7 254 80.3
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 1.5e-93 348.6 228 79.8
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 1.5e-90 338.6 674 35.9
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 4.5e-90 337.0 570 38.4
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 6.5e-89 333.2 280 63.6
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 5.3e-83 313.5 283 64.7
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 1.5e-74 285.4 220 68.2
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 2.5e-72 278.1 620 35.6
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 1.7e-68 265.4 260 55.4
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 3.8e-57 227.6 152 75.0
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 4.0e-54 217.6 142 74.6
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 2.3e-46 191.8 135 74.1
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 6.8e-46 190.3 157 59.9
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 2.3e-38 165.2 133 62.4
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 3.4e-37 161.4 103 79.6
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 1.2e-34 152.9 241 39.0
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 1.6e-34 152.5 117 62.4
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 5.0e-33 147.5 195 44.6
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.6e-31 142.5 188 43.1
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 6.6e-25 120.6 75 68.0
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 2.5e-24 118.6 118 55.1
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 1.4e-22 112.8 154 46.8
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 5.8e-21 107.5 120 50.0
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 1.7e-20 105.9 65 80.0
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 4.9e-20 104.4 100 63.0
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.9e-19 102.4 105 56.2
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 2.7e-18 98.6 82 67.1
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 4.4e-13 81.3 239 32.6
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 2.9e-12 78.6 113 38.1
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 6.4e-12 77.4 1008 19.8
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 3.2e-11 75.1 48 68.8
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 5.4e-11 74.3 87 54.0
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 7.1e-11 73.9 969 19.6
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 4.3e-08 64.7 90 40.0
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 1.2e-07 63.2 81 43.2
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 1.2e-07 63.2 131 37.4
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 1.6e-07 62.8 131 37.4
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 3.6e-07 61.6 69 46.4


User provided reference genes

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