Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 5.5e-107 391.0 195 100.0
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 3.5e-85 318.5 193 86.0
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 1.4e-73 280.0 197 74.6
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 4.9e-71 271.6 200 73.0
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 3.5e-37 159.1 189 52.4
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 3.5e-37 159.1 194 54.6
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 6.6e-28 128.3 194 47.9
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 8.7e-28 127.9 193 48.2
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 4.3e-27 125.6 183 47.0
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.8e-26 122.1 197 45.7
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 4.8e-26 122.1 197 45.2
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 6.2e-26 121.7 186 44.6
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 6.2e-26 121.7 194 45.9
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 8.1e-26 121.3 197 45.2
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 1.8e-25 120.2 205 44.9
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 2.4e-25 119.8 176 47.2
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.1e-25 119.4 195 45.1
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 4.0e-25 119.0 193 44.6
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 4.0e-25 119.0 186 47.3
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 4.0e-25 119.0 199 46.2
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 4.0e-25 119.0 167 46.1
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 6.9e-25 118.2 177 48.6
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 1.2e-24 117.5 190 46.8
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 1.2e-24 117.5 189 47.1
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 2.0e-24 116.7 184 42.9
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 2.0e-24 116.7 189 45.5
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.0e-24 116.7 177 49.7
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 2.6e-24 116.3 189 46.6
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 2.6e-24 116.3 187 46.5
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.4e-24 115.9 175 47.4
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 4.5e-24 115.5 190 45.8
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 7.6e-24 114.8 177 47.5
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 9.9e-24 114.4 179 45.8
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 1.3e-23 114.0 183 48.1
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 1.7e-23 113.6 188 44.1
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 1.7e-23 113.6 187 44.9
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 2.2e-23 113.2 190 41.6
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 2.2e-23 113.2 192 45.8
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 3.8e-23 112.5 187 43.9
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 6.4e-23 111.7 202 42.1
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 8.4e-23 111.3 190 45.3
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 1.1e-22 110.9 179 43.6
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.1e-22 110.9 171 43.3
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 1.4e-22 110.5 188 46.3
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.4e-22 110.5 187 46.0
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 1.9e-22 110.2 185 43.8
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 3.2e-22 109.4 188 42.0
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 3.2e-22 109.4 192 42.7
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 3.2e-22 109.4 191 42.9
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.2e-22 109.4 199 44.2
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 7.1e-22 108.2 188 42.0
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 7.1e-22 108.2 184 43.5
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 9.3e-22 107.8 209 40.7
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 9.3e-22 107.8 187 41.7
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 1.2e-21 107.5 197 42.1
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 1.2e-21 107.5 185 41.1
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 2.1e-21 106.7 188 42.6
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.5e-21 105.9 201 41.8
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 4.6e-21 105.5 187 45.5
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 1.8e-20 103.6 184 44.0
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 6.7e-20 101.7 179 43.0
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 8.7e-20 101.3 194 39.7
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 8.7e-20 101.3 196 41.3
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.5e-19 100.5 210 39.5
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.5e-19 100.5 191 40.8
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 1.5e-19 100.5 206 41.3
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 1.9e-19 100.1 184 43.5
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 1.9e-19 100.1 184 43.5
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 1.9e-19 100.1 179 42.5
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 2.5e-19 99.8 190 38.9
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 3.3e-19 99.4 183 44.3
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 3.3e-19 99.4 176 43.8
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 3.3e-19 99.4 169 43.8
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 4.3e-19 99.0 209 39.7
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.3e-19 99.0 180 40.0
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 5.6e-19 98.6 205 41.0
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 5.6e-19 98.6 213 41.8
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 5.6e-19 98.6 213 41.8
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 7.4e-19 98.2 139 48.2
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 7.4e-19 98.2 184 41.8
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 1.3e-18 97.4 210 40.0
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 1.3e-18 97.4 210 40.0
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.6e-18 97.1 180 41.1
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.6e-18 97.1 180 41.1
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 2.8e-18 96.3 214 37.9
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 2.8e-18 96.3 209 40.2
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 3.7e-18 95.9 81 69.1
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 8.1e-18 94.7 174 41.4
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 1.1e-17 94.4 176 40.3
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.1e-17 94.4 179 40.2
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 1.1e-17 94.4 156 41.7
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.4e-17 94.0 174 41.4
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 1.4e-17 94.0 191 39.8
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.8e-17 93.6 199 36.2
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 2.4e-17 93.2 176 41.5
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 3.1e-17 92.8 220 38.6
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 9.0e-17 91.3 187 40.1
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 9.0e-17 91.3 196 38.3
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 2.0e-16 90.1 206 36.4
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 2.6e-16 89.7 193 38.3
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.6e-16 89.7 203 38.9
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 4.5e-16 89.0 169 42.0
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 4.5e-16 89.0 205 40.5
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 4.5e-16 89.0 199 38.2
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 5.8e-16 88.6 169 42.0
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 9.9e-16 87.8 210 35.7
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.3e-15 87.4 197 37.1
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 1.7e-15 87.0 143 44.8
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 2.2e-15 86.7 208 39.4
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 3.8e-15 85.9 196 34.7
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 3.8e-15 85.9 200 36.5
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 1.4e-14 84.0 184 35.9
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 1.9e-14 83.6 164 39.6
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 2.4e-14 83.2 194 36.1
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 2.4e-14 83.2 191 36.6
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 5.5e-14 82.0 202 36.6
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 5.5e-14 82.0 171 38.0
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 5.5e-14 82.0 197 39.6
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 7.1e-14 81.6 206 38.8
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 7.1e-14 81.6 193 37.3
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 7.1e-14 81.6 163 37.4
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 7.1e-14 81.6 118 45.8
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 9.3e-14 81.3 158 38.6
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.5e-13 79.3 78 52.6
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.5e-13 79.3 78 52.6
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 4.6e-13 79.0 79 58.2
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.0e-12 77.8 197 38.1
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 1.8e-12 77.0 211 35.1
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 1.8e-12 77.0 209 35.9
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.8e-12 77.0 197 35.0
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 2.3e-12 76.6 179 37.4
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 6.7e-12 75.1 179 39.1
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 8.7e-12 74.7 169 37.9
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.1e-11 74.3 86 50.0
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 1.1e-11 74.3 73 56.2
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 1.9e-11 73.6 191 33.5
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 5.6e-11 72.0 200 32.5
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 9.6e-11 71.2 83 51.8
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.3e-10 70.9 198 32.3
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.6e-10 70.5 192 33.3
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 3.7e-10 69.3 172 33.1
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 6.2e-10 68.6 60 60.0
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 8.2e-10 68.2 185 33.5
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.4e-09 66.6 191 32.5
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 3.1e-09 66.2 189 29.6
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 6.9e-09 65.1 60 53.3
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 7.6e-08 61.6 60 56.7
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 7.6e-08 61.6 155 38.7
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 1.3e-07 60.8 74 48.6
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 1.1e-06 57.8 204 30.4
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 1.4e-06 57.4 45 57.8


User provided reference genes

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