Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 2.1e-291 1005.0 507 100.0
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 8.3e-264 913.3 507 90.1
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 1.7e-240 835.9 501 82.8
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 8.6e-237 823.5 494 83.4
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.1e-235 818.9 495 82.0
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 4.7e-235 817.8 498 81.7
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 4.0e-234 814.7 504 80.6
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 7.5e-233 810.4 493 81.1
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 7.5e-233 810.4 501 80.2
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 2.2e-232 808.9 496 82.5
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 1.9e-231 805.8 487 81.7
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 2.7e-230 802.0 498 80.9
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 6.0e-230 800.8 503 79.7
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.3e-229 799.7 499 80.0
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.1e-228 796.6 503 79.1
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.9e-228 795.8 508 79.1
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-227 793.1 502 80.1
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.6e-227 791.6 502 79.9
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 3.6e-227 791.6 498 78.5
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.1e-227 790.4 501 79.8
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.4e-226 789.6 509 78.0
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.2e-225 786.6 501 78.0
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 2.6e-225 785.4 499 78.4
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 3.4e-225 785.0 500 77.8
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 4.4e-225 784.6 503 79.3
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 5.8e-225 784.3 501 77.4
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 2.2e-224 782.3 506 78.3
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 2.9e-224 781.9 497 78.5
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 2.9e-224 781.9 500 79.4
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 3.8e-224 781.6 499 77.6
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.1e-223 780.0 501 77.0
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.9e-223 779.2 498 77.3
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 2.1e-222 775.8 503 79.1
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 4.6e-222 774.6 490 78.0
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 4.6e-222 774.6 489 78.9
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 4.6e-222 774.6 491 77.4
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 6.0e-222 774.2 487 79.3
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 7.8e-222 773.9 494 77.9
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 3.0e-221 771.9 499 77.4
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 3.0e-221 771.9 491 77.2
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 5.1e-221 771.2 499 76.6
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.1e-220 770.0 502 77.3
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 2.5e-220 768.8 492 78.0
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.8e-219 765.4 503 77.9
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 2.8e-219 765.4 503 77.9
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 2.8e-219 765.4 510 76.1
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.4e-218 763.1 499 77.0
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 3.1e-218 761.9 487 78.2
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 6.9e-218 760.8 496 77.2
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 6.9e-218 760.8 499 76.0
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 9.0e-218 760.4 502 74.9
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.0e-217 759.2 497 76.9
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 3.4e-217 758.4 501 77.2
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 4.4e-217 758.1 499 75.6
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 7.6e-217 757.3 494 75.3
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 9.9e-217 756.9 494 75.3
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 9.9e-217 756.9 499 76.0
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 1.7e-216 756.1 499 75.2
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 1.7e-216 756.1 499 75.2
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.2e-216 755.7 496 76.4
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 2.2e-216 755.7 499 75.8
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 2.9e-216 755.4 495 76.0
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 3.8e-216 755.0 495 75.6
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 6.4e-216 754.2 529 73.7
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.4e-215 753.1 500 76.4
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 1.6e-214 749.6 509 74.3
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.6e-214 749.6 495 75.4
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 1.6e-214 749.6 486 77.6
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 2.1e-214 749.2 500 76.0
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 2.1e-214 749.2 504 75.8
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.1e-214 749.2 495 75.4
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.7e-214 748.8 498 75.3
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 3.5e-214 748.4 494 74.9
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.3e-213 746.5 501 75.0
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.7e-213 746.1 499 74.7
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.3e-213 745.7 494 76.5
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 3.0e-213 745.3 495 74.7
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 3.9e-213 745.0 497 74.8
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 8.7e-213 743.8 522 72.2
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 1.1e-212 743.4 493 75.7
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 4.3e-212 741.5 495 75.2
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 2.1e-211 739.2 490 75.7
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 2.8e-211 738.8 506 73.5
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 6.2e-211 737.6 495 75.8
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 2.4e-210 735.7 485 76.7
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.4e-210 735.7 500 74.4
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.2e-209 733.4 498 73.9
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 1.5e-209 733.0 500 73.6
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 3.4e-209 731.9 503 73.8
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 5.8e-209 731.1 485 74.8
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.9e-208 728.8 495 72.5
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 2.9e-208 728.8 530 71.7
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.9e-207 726.1 499 73.3
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.9e-207 726.1 499 73.3
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 3.9e-205 718.4 494 71.7
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.1e-203 712.6 502 71.5
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 4.8e-203 711.4 503 74.4
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 6.9e-202 707.6 459 75.8
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 2.2e-200 702.6 492 72.6
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 2.9e-200 702.2 495 71.3
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.4e-199 699.9 497 72.6
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 7.1e-199 697.6 494 69.4
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 4.6e-198 694.9 484 72.5
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.4e-194 683.3 489 70.1
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 3.1e-194 682.2 526 67.7
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 4.0e-194 681.8 530 67.4
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.0e-192 677.2 583 60.4
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.0e-192 677.2 491 68.4
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 1.3e-192 676.8 492 69.7
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 6.5e-192 674.5 497 67.2
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 3.2e-191 672.2 500 67.4
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 5.5e-191 671.4 489 67.5
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 7.1e-191 671.0 498 70.1
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 1.6e-190 669.8 490 69.6
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 8.7e-189 664.1 468 71.8
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 2.8e-187 659.1 489 69.7
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 6.3e-187 657.9 569 62.4
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 2.6e-185 652.5 491 66.8
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 2.2e-184 649.4 503 62.8
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 1.2e-182 643.7 497 65.4
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 2.7e-182 642.5 499 63.3
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.6e-182 641.7 404 79.0
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 7.9e-182 641.0 487 68.2
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 2.0e-180 636.3 495 66.3
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.3e-176 623.6 509 65.0
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 9.4e-167 590.9 379 79.2
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.3e-163 580.5 530 56.8
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 6.3e-163 578.2 554 57.2
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 4.5e-161 572.0 457 60.8
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.1e-158 561.6 353 81.0
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 5.2e-157 558.5 495 58.4
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.5e-156 557.0 359 78.3
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.5e-156 557.0 400 73.0
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 5.9e-153 545.0 399 68.9
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.8e-152 542.3 364 76.9
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 9.1e-146 521.2 394 69.3
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.0e-144 517.7 373 72.7
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.5e-140 503.8 364 72.0
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.4e-131 471.9 408 63.0
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.0e-129 466.8 312 77.2
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 3.3e-127 459.5 468 52.8
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.0e-125 452.6 282 80.1
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 2.6e-124 449.9 275 82.2
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.2e-122 443.0 273 81.7
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.3e-120 437.6 363 62.8
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.3e-94 351.3 233 74.2
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 2.4e-85 320.5 252 68.7
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.6e-84 317.0 196 81.1
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.0e-80 305.1 484 37.2
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.3e-79 300.1 182 80.2
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 1.5e-71 274.6 204 69.1
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 3.2e-66 256.9 200 64.0
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 1.4e-58 231.5 235 55.3
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 3.2e-58 230.3 327 44.6
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 1.2e-57 228.4 136 80.9
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 3.7e-54 216.9 134 79.1
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 4.8e-54 216.5 128 82.0
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 1.6e-52 211.5 263 51.7
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 1.0e-51 208.8 153 70.6
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 1.7e-51 208.0 144 72.2
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.4e-47 193.4 114 80.7
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.1e-41 174.5 114 75.4
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 8.0e-41 172.6 147 59.9
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.6e-39 167.5 102 79.4
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 2.6e-39 167.5 102 79.4
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 8.0e-33 146.0 207 42.5
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 9.5e-26 122.5 144 52.1
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 4.7e-25 120.2 72 83.3
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 6.1e-25 119.8 74 77.0
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 4.4e-23 113.6 78 71.8
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 4.4e-23 113.6 64 82.8
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 5.7e-23 113.2 108 60.2
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 1.3e-22 112.1 67 79.1
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.5e-20 104.0 64 79.7
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 5.9e-20 103.2 65 81.5
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 1.0e-19 102.4 189 37.6
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.0e-19 100.9 64 76.6
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 8.6e-19 99.4 64 75.0
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.3e-16 91.3 76 64.5
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 3.2e-13 80.9 46 73.9
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 9.5e-10 69.3 38 78.9
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 2.8e-09 67.8 48 79.2


User provided reference genes

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