Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G072100 Populus trichocarpa HOM05D006127 ORTHO05D007465 1.9e-298 1028.5 553 100.0
Sabra04G0047500 Salix brachista HOM05D006127 ORTHO05D007465 7.4e-266 920.2 608 81.1
Potri.017G148900 Populus trichocarpa HOM05D006127 ORTHO05D007465 9.7e-258 893.3 554 84.5
Sabra17G0124200 Salix brachista HOM05D006127 ORTHO05D007465 4.1e-256 887.9 553 83.4
Manes.06G153500 Manihot esculenta HOM05D006127 ORTHO05D007465 6.1e-220 767.7 525 75.6
COL.COLO4_30292 Corchorus olitorius HOM05D006127 ORTHO05D007465 1.3e-214 750.0 505 76.6
Thecc.03G186000 Theobroma cacao HOM05D006127 ORTHO05D007465 5.2e-211 738.0 524 73.9
Gorai.003G069400 Gossypium raimondii HOM05D006127 ORTHO05D007465 1.8e-208 729.6 503 75.0
Gohir.A11G225200 Gossypium hirsutum HOM05D006127 ORTHO05D007465 9.2e-208 727.2 503 74.4
Gohir.D11G229300 Gossypium hirsutum HOM05D006127 ORTHO05D007465 5.9e-207 724.5 503 74.6
Atru.chr1.338 Acer truncatum HOM05D006127 ORTHO05D007465 1.5e-205 719.9 528 71.0
TWI23G0320 Tripterygium wilfordii HOM05D006127 ORTHO05D007465 1.2e-202 710.3 507 72.2
Ciclev10004691m.g Citrus clementina HOM05D006127 ORTHO05D007465 2.9e-201 705.7 529 70.9
Dinv35267 Davidia involucrata HOM05D006127 ORTHO05D007465 6.4e-201 704.5 514 72.0
Cfa016302 Carpinus fangiana HOM05D006127 ORTHO05D007465 4.7e-196 688.3 535 68.8
QL09p012458 Quercus lobata HOM05D006127 ORTHO05D007465 2.2e-193 679.5 515 69.1
Prupe.2G302400 Prunus persica HOM05D006127 ORTHO05D007465 3.7e-193 678.7 512 70.7
CSS0002355 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 4.1e-192 675.2 537 67.6
MD07G1280200 Malus domestica HOM05D006127 ORTHO05D007465 7.8e-191 671.0 510 70.2
CiPaw.06G004100 Carya illinoinensis HOM05D006127 ORTHO05D007465 6.6e-190 667.9 531 67.2
CSS0021566 Camellia sinensis var. sinensis HOM05D006127 ORTHO05D007465 1.1e-189 667.2 541 66.4
Eucgr.A02719 Eucalyptus grandis HOM05D006127 ORTHO05D007465 5.6e-189 664.8 512 68.6
PGR044G2596 Punica granatum HOM05D006127 ORTHO05D007465 1.1e-187 660.6 502 68.1
MSTRG.8699 Avicennia marina HOM05D006127 ORTHO05D007465 4.0e-187 658.7 518 64.5
TAR374G0777 Trochodendron aralioides HOM05D006127 ORTHO05D007465 5.2e-187 658.3 464 72.2
Actinidia34165 Actinidia chinensis HOM05D006127 ORTHO05D007465 1.2e-186 657.1 494 70.0
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 7.6e-186 654.4 509 69.0
MD01G1210100 Malus domestica HOM05D006127 ORTHO05D007465 3.2e-184 649.0 442 74.9
Gorai.006G199600 Gossypium raimondii HOM05D006127 ORTHO05D007465 9.2e-184 647.5 501 68.1
Lj2g0027649 Lotus japonicus HOM05D006127 ORTHO05D007465 2.1e-183 646.4 507 67.5
Gohir.D09G177600 Gossypium hirsutum HOM05D006127 ORTHO05D007465 2.5e-181 639.4 501 67.1
Ca_26803_v3 Cicer arietinum L. HOM05D006127 ORTHO05D007465 9.6e-181 637.5 504 68.1
Nitab4.5_0000472g0230 Nicotiana tabacum HOM05D006127 ORTHO05D007465 2.8e-180 636.0 465 71.6
Peaxi162Scf00444g00314 Petunia axillaris HOM05D006127 ORTHO05D007465 2.8e-180 636.0 465 71.8
THA.LOC104818243 Tarenaya hassleriana HOM05D006127 ORTHO05D007465 4.7e-180 635.2 501 67.5
CiPaw.05G261300 Carya illinoinensis HOM05D006127 ORTHO05D007465 1.1e-179 634.0 435 73.6
Lalb_Chr01g0009501 Lupinus albus HOM05D006127 ORTHO05D007465 1.8e-179 633.3 501 66.9
PGSC0003DMG400009503 Solanum tuberosum HOM05D006127 ORTHO05D007465 1.5e-178 630.2 465 69.9
Glyma.09G129300 Glycine max HOM05D006127 ORTHO05D007465 7.6e-178 627.9 512 66.6
Gohir.A09G182900 Gossypium hirsutum HOM05D006127 ORTHO05D007465 9.9e-178 627.5 491 67.4
CsaV3_5G001020 Cucumis sativus L. HOM05D006127 ORTHO05D007465 2.2e-177 626.3 513 63.7
Solyc03g007620.3 Solanum lycopersicum HOM05D006127 ORTHO05D007465 2.2e-177 626.3 465 69.2
RcHm_v2.0_Chr1g0378611 Rosa chinensis HOM05D006127 ORTHO05D007465 4.9e-177 625.2 515 65.4
AL8G39630 Arabidopsis lyrata HOM05D006127 ORTHO05D007465 6.4e-177 624.8 507 64.5
Sopen03g003570 Solanum pennellii HOM05D006127 ORTHO05D007465 1.1e-176 624.0 465 69.0
FAN10G2357 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.4e-176 623.6 513 65.3
FAN10G0315 Fragaria x ananassa HOM05D006127 ORTHO05D007465 4.2e-176 622.1 513 65.1
Medtr6g053110 Medicago truncatula HOM05D006127 ORTHO05D007465 5.4e-176 621.7 497 67.0
AT5G62650 Arabidopsis thaliana HOM05D006127 ORTHO05D007465 7.1e-176 621.3 498 65.3
FAN06G1782 Fragaria x ananassa HOM05D006127 ORTHO05D007465 7.1e-176 621.3 513 65.1
Phvul.004G105900 Phaseolus vulgaris HOM05D006127 ORTHO05D007465 7.1e-176 621.3 508 66.1
Carub.0008s2341 Capsella rubella HOM05D006127 ORTHO05D007465 1.2e-175 620.5 498 65.3
Nitab4.5_0001331g0020 Nicotiana tabacum HOM05D006127 ORTHO05D007465 1.2e-175 620.5 474 69.6
FAN03G3352 Fragaria x ananassa HOM05D006127 ORTHO05D007465 1.6e-175 620.2 513 65.3
FAN06G3350 Fragaria x ananassa HOM05D006127 ORTHO05D007465 2.7e-175 619.4 513 64.7
FAN03G2078 Fragaria x ananassa HOM05D006127 ORTHO05D007465 3.5e-175 619.0 513 65.1
Lj1A1007G54 Lonicera japonica HOM05D006127 ORTHO05D007465 7.8e-175 617.8 468 68.6
MELO3C005842.2 Cucumis melo HOM05D006127 ORTHO05D007465 2.3e-174 616.3 514 62.6
Haze_00059 Corylus avellana HOM05D006127 ORTHO05D007465 5.1e-174 615.1 535 63.7
CAN.G236.3 Capsicum annuum HOM05D006127 ORTHO05D007465 1.1e-173 614.0 456 70.0
Migut.F00277 Erythranthe guttata HOM05D006127 ORTHO05D007465 1.5e-173 613.6 519 62.6
Thhalv10003967m.g Eutrema salsugineum HOM05D006127 ORTHO05D007465 1.5e-173 613.6 508 62.6
HanXRQChr00c0486g0575011 Helianthus annuus HOM05D006127 ORTHO05D007465 2.5e-173 612.8 502 62.2
Sp2g25830 Schrenkiella parvula HOM05D006127 ORTHO05D007465 7.3e-173 611.3 507 63.1
ClCG01G000890 Citrullus lanatus HOM05D006127 ORTHO05D007465 2.1e-172 609.8 527 61.9
Aa31LG11G990 Aethionema arabicum HOM05D006127 ORTHO05D007465 1.4e-171 607.1 513 62.8
CARHR276460 Cardamine hirsuta HOM05D006127 ORTHO05D007465 1.4e-171 607.1 508 63.0
Sed0008008 Sechium edule HOM05D006127 ORTHO05D007465 2.4e-171 606.3 513 62.6
ECA232G4568 Erigeron canadensis HOM05D006127 ORTHO05D007465 9.0e-171 604.4 469 63.8
PSO478G4852 Papaver somniferum HOM05D006127 ORTHO05D007465 9.0e-171 604.4 465 64.9
arahy.Tifrunner.gnm1.ann1.HXNP43 Arachis hypogaea HOM05D006127 ORTHO05D007465 1.2e-170 604.0 519 63.4
arahy.Tifrunner.gnm1.ann1.AR9FJK Arachis hypogaea HOM05D006127 ORTHO05D007465 9.9e-170 600.9 530 62.6
PSO266G0017 Papaver somniferum HOM05D006127 ORTHO05D007465 1.3e-169 600.5 462 64.5
Nn6g32416 Nelumbo nucifera HOM05D006127 ORTHO05D007465 2.2e-169 599.7 520 62.5
BraA06t25889Z Brassica rapa HOM05D006127 ORTHO05D007465 4.9e-169 598.6 493 63.9
BcaC01g02503 Brassica carinata HOM05D006127 ORTHO05D007465 1.1e-168 597.4 493 63.7
A06p29390 Brassica napus HOM05D006127 ORTHO05D007465 3.2e-168 595.9 491 63.3
C03p64120 Brassica napus HOM05D006127 ORTHO05D007465 1.2e-167 594.0 493 63.5
BolC3t18667H Brassica oleracea HOM05D006127 ORTHO05D007465 1.2e-167 594.0 493 63.5
Cpa.g.sc107.127 Carica papaya HOM05D006127 ORTHO05D007465 2.1e-167 593.2 407 74.4
Sc13g0009280 Simmondsia chinensis HOM05D006127 ORTHO05D007465 3.5e-167 592.4 481 64.0
Cc02_g02250 Coffea canephora HOM05D006127 ORTHO05D007465 1.0e-166 590.9 432 67.8
BcaB02g09667 Brassica carinata HOM05D006127 ORTHO05D007465 5.1e-166 588.6 481 63.8
Glyma.16G177100 Glycine max HOM05D006127 ORTHO05D007465 5.1e-166 588.6 510 64.3
Aqoxy7G00200 Aquilegia oxysepala HOM05D006127 ORTHO05D007465 1.5e-165 587.0 473 64.7
Lsat_1_v5_gn_9_56840 Lactuca sativa HOM05D006127 ORTHO05D007465 5.6e-165 585.1 454 65.4
EL10Ac3g05405 Beta vulgaris HOM05D006127 ORTHO05D007465 8.1e-164 581.3 469 66.1
DCAR_008898 Daucus carota HOM05D006127 ORTHO05D007465 1.7e-161 573.5 495 60.4
unitig_747.g21859 Utricularia gibba HOM05D006127 ORTHO05D007465 1.7e-161 573.5 502 59.8
AUR62031438 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.9e-160 570.1 460 64.3
HanXRQChr15g0494171 Helianthus annuus HOM05D006127 ORTHO05D007465 1.4e-155 553.9 492 59.1
GSVIVG01028824001 Vitis vinifera HOM05D006127 ORTHO05D007465 1.8e-155 553.5 425 66.1
Oeu003330.1 Olea europaea HOM05D006127 ORTHO05D007465 1.2e-154 550.8 411 66.2
SGA_v2.0_scaffold60G21123 Striga asiatica HOM05D006127 ORTHO05D007465 1.3e-153 547.4 514 58.8
Ah.07g206460 Amaranthus hybridus HOM05D006127 ORTHO05D007465 9.3e-152 541.2 507 58.2
ATR0721G168 Amborella trichopoda HOM05D006127 ORTHO05D007465 1.5e-149 533.9 492 59.6
Hund04798 Selenicereus undatus HOM05D006127 ORTHO05D007465 5.8e-146 521.9 619 49.8
Rhsim03G0192200 Rhododendron simsii HOM05D006127 ORTHO05D007465 3.2e-144 516.2 513 57.9
Ah.13g069260 Amaranthus hybridus HOM05D006127 ORTHO05D007465 7.9e-143 511.5 408 63.5
CDE04G3725 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 5.1e-142 508.8 514 53.9
TPR.G9177 Trifolium pratense HOM05D006127 ORTHO05D007465 1.1e-141 507.7 298 82.9
vmacro06616 Vaccinium macrocarpon HOM05D006127 ORTHO05D007465 1.1e-141 507.7 491 58.9
AUR62021102 Chenopodium quinoa HOM05D006127 ORTHO05D007465 1.6e-140 503.8 461 59.4
Psat0s2186g0040 Pisum sativum HOM05D006127 ORTHO05D007465 6.9e-139 498.4 331 76.7
HPP92_008801 Vanilla planifolia HOM05D006127 ORTHO05D007465 6.5e-137 491.9 500 53.4
Zm00001eb119480 Zea mays HOM05D006127 ORTHO05D007465 6.1e-135 485.3 501 53.1
FvH4_7g30450 Fragaria vesca HOM05D006127 ORTHO05D007465 2.0e-133 480.3 344 71.8
Oeu027861.1 Olea europaea HOM05D006127 ORTHO05D007465 2.2e-113 413.7 433 54.3
Nn1g01683 Nelumbo nucifera HOM05D006127 ORTHO05D007465 8.8e-110 401.7 508 48.4
BcaB02g09671 Brassica carinata HOM05D006127 ORTHO05D007465 5.0e-105 386.0 458 48.7
VMungo0464G0768 Vigna mungo HOM05D006127 ORTHO05D007465 1.6e-103 380.9 213 85.4
HPP92_005266 Vanilla planifolia HOM05D006127 ORTHO05D007465 2.2e-100 370.5 377 52.5
CDE03G0317 Ceratophyllum demersum HOM05D006127 ORTHO05D007465 9.8e-93 345.1 276 61.2
SGA_v2.0_scaffold192G40622 Striga asiatica HOM05D006127 ORTHO05D007465 2.0e-90 337.4 259 66.4
FAN01G1207 Fragaria x ananassa HOM05D006127 ORTHO05D007465 5.6e-72 276.2 221 66.1
Mapoly0009s0032 Marchantia polymorpha HOM05D006127 ORTHO05D007465 1.2e-69 268.5 474 36.9
Os01g0225300 Oryza sativa ssp. japonica HOM05D006127 ORTHO05D007465 1.4e-67 261.5 286 51.0
AagrBONN_evm.TU.Sc2ySwM_368.2100 Anthoceros agrestis HOM05D006127 ORTHO05D007465 2.4e-67 260.8 330 44.2
Pp3c17_22580 Physcomitrium patens HOM05D006127 ORTHO05D007465 2.9e-60 237.3 525 30.5
arahy.Tifrunner.gnm1.ann1.KML1I1 Arachis hypogaea HOM05D006127 ORTHO05D007465 1.5e-48 198.4 246 48.0
Cfa002216 Carpinus fangiana HOM05D006127 ORTHO05D007465 1.5e-37 161.8 232 46.6
SEGI_03634 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 4.6e-34 150.2 120 57.5
SMO266G0103 Selaginella moellendorffii HOM05D006127 ORTHO05D007465 1.5e-32 145.2 202 35.1
AL8G39600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.2e-31 139.4 95 70.5
TPR.G27774 Trifolium pratense HOM05D006127 ORTHO05D007465 4.1e-30 137.1 176 48.3
TPR.G9175 Trifolium pratense HOM05D006127 ORTHO05D007465 4.3e-24 117.1 80 70.0
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 9.0e-22 109.4 184 41.3
SEGI_25179 Sequoiadendron giganteum HOM05D006127 ORTHO05D007465 3.9e-17 94.0 83 57.8
Ah.13g069250 Amaranthus hybridus HOM05D006127 ORTHO05D007465 4.4e-16 90.5 109 56.0
Aqoxy1G04253 Aquilegia oxysepala HOM05D006127 ORTHO05D078839 6.3e-07 60.1 49 63.3


User provided reference genes

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