Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.2e-89 333.2 172 100.0
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 1.5e-84 316.2 172 96.5
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 2.3e-80 302.4 170 92.4
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 4.3e-79 298.1 169 90.5
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 2.9e-75 285.4 172 82.6
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 3.0e-72 275.4 170 80.0
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 3.9e-72 275.0 170 79.4
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 8.6e-72 273.9 172 80.2
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.1e-71 273.5 170 79.4
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 3.3e-71 271.9 167 80.8
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 4.3e-71 271.6 155 83.2
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 5.6e-71 271.2 172 78.5
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.6e-71 271.2 172 79.1
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 5.6e-71 271.2 176 76.7
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 7.3e-71 270.8 177 75.1
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 7.3e-71 270.8 158 82.9
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.6e-70 269.6 170 78.2
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 1.6e-70 269.6 170 80.0
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 1.6e-70 269.6 158 82.9
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 1.6e-70 269.6 172 78.5
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.6e-70 269.6 172 80.2
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 2.1e-70 269.2 168 79.2
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 3.6e-70 268.5 172 78.5
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 4.7e-70 268.1 172 77.3
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 6.2e-70 267.7 172 77.9
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.1e-69 266.9 172 77.3
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 1.4e-69 266.5 173 78.0
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 1.4e-69 266.5 178 74.2
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.4e-69 266.5 172 76.7
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 2.3e-69 265.8 170 77.1
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 2.3e-69 265.8 177 75.1
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 2.3e-69 265.8 158 81.0
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 2.3e-69 265.8 172 77.9
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 4.0e-69 265.0 178 73.6
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 4.0e-69 265.0 172 76.2
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 5.2e-69 264.6 174 78.2
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 5.2e-69 264.6 172 77.3
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 5.2e-69 264.6 171 77.8
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.2e-69 264.6 173 74.0
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 5.2e-69 264.6 172 76.2
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 6.8e-69 264.2 172 74.4
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 8.9e-69 263.8 173 75.1
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 8.9e-69 263.8 172 76.7
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 8.9e-69 263.8 172 76.2
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 2.0e-68 262.7 172 76.7
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 2.0e-68 262.7 172 77.3
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 2.0e-68 262.7 172 77.3
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 2.0e-68 262.7 172 77.3
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 2.6e-68 262.3 172 77.3
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 2.6e-68 262.3 169 75.1
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 2.6e-68 262.3 169 75.7
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.4e-68 261.5 172 76.2
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.4e-68 261.5 172 76.2
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 5.8e-68 261.2 172 76.7
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 5.8e-68 261.2 172 75.0
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 5.8e-68 261.2 170 75.3
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 5.8e-68 261.2 172 75.0
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 9.9e-68 260.4 172 75.6
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 9.9e-68 260.4 175 77.1
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.3e-67 260.0 174 75.3
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 1.7e-67 259.6 174 71.8
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 1.7e-67 259.6 174 75.3
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 2.2e-67 259.2 172 72.7
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 2.2e-67 259.2 173 75.1
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 3.8e-67 258.5 176 71.0
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.9e-67 258.1 172 75.0
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 4.9e-67 258.1 172 75.0
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 6.4e-67 257.7 173 73.4
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 6.4e-67 257.7 172 76.7
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 8.4e-67 257.3 172 74.4
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 8.4e-67 257.3 174 74.7
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.1e-66 256.9 172 75.0
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 1.1e-66 256.9 172 72.1
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.1e-66 256.9 173 75.1
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 1.4e-66 256.5 178 71.3
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 1.4e-66 256.5 173 75.7
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 1.4e-66 256.5 170 74.7
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 1.9e-66 256.1 172 73.8
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 1.9e-66 256.1 174 72.4
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 2.4e-66 255.8 172 75.0
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 2.4e-66 255.8 170 74.7
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 4.1e-66 255.0 172 74.4
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 5.4e-66 254.6 170 73.5
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 7.1e-66 254.2 178 70.8
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 7.1e-66 254.2 169 72.2
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 9.2e-66 253.8 155 77.4
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 9.2e-66 253.8 170 73.5
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.2e-66 253.8 170 73.5
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.2e-66 253.8 170 73.5
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 1.2e-65 253.4 174 73.6
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.2e-65 253.4 170 72.9
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.2e-65 253.4 170 72.9
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 1.2e-65 253.4 170 72.9
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 1.6e-65 253.1 172 74.4
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 1.6e-65 253.1 172 74.4
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 2.1e-65 252.7 168 72.0
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.1e-65 252.7 174 70.1
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.1e-65 252.7 170 73.5
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 2.1e-65 252.7 157 77.7
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 2.1e-65 252.7 157 77.7
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 2.7e-65 252.3 165 72.7
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 2.7e-65 252.3 173 74.0
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.5e-65 251.9 170 72.9
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 3.5e-65 251.9 178 70.8
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 4.6e-65 251.5 169 72.2
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 4.6e-65 251.5 172 73.8
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 4.6e-65 251.5 173 72.3
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 6.0e-65 251.1 175 72.0
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.0e-64 250.4 168 71.4
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 1.0e-64 250.4 176 71.0
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 1.0e-64 250.4 176 71.0
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 1.3e-64 250.0 149 80.5
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 1.3e-64 250.0 174 73.0
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 2.3e-64 249.2 175 71.4
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 3.0e-64 248.8 146 80.8
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 3.0e-64 248.8 169 71.0
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 3.9e-64 248.4 169 72.2
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 3.9e-64 248.4 175 71.4
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 1.1e-63 246.9 175 71.4
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 1.1e-63 246.9 181 69.6
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 1.5e-63 246.5 181 68.5
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.3e-63 245.0 168 72.0
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 7.3e-63 244.2 153 77.1
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 1.2e-62 243.4 157 76.4
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 2.8e-62 242.3 172 72.1
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 2.8e-62 242.3 172 72.1
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 6.2e-62 241.1 181 66.9
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 1.1e-61 240.4 181 67.4
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 1.4e-61 240.0 149 77.2
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 1.8e-61 239.6 153 75.2
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 3.1e-61 238.8 166 71.7
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.2e-60 236.9 228 54.8
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 4.4e-60 235.0 152 74.3
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 7.6e-60 234.2 164 69.5
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 7.1e-58 227.6 168 68.5
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.6e-57 226.5 165 68.5
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 6.6e-56 221.1 147 70.7
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.4e-53 213.4 165 63.6
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 3.1e-53 212.2 149 71.1
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.1e-50 203.8 132 78.0
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 2.1e-49 199.5 129 75.2
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 1.0e-48 197.2 142 64.8
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 1.3e-48 196.8 172 61.0
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 4.9e-43 178.3 132 66.7
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 7.1e-42 174.5 130 65.4
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 1.3e-40 170.2 130 60.0
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 3.0e-40 169.1 108 79.6
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 5.1e-40 168.3 130 63.8
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 5.6e-39 164.9 173 51.4
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 9.6e-39 164.1 111 70.3
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 4.0e-37 158.7 130 57.7
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 4.5e-36 155.2 153 52.3
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 5.8e-36 154.8 112 73.2
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 1.6e-33 146.7 88 83.0
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.8e-32 143.3 173 52.6
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 2.5e-31 139.4 86 80.2
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 1.3e-30 137.1 116 56.9
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.5e-26 122.9 99 58.6
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 4.2e-26 122.1 98 63.3
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.7e-25 119.4 105 62.9
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 6.3e-22 108.2 142 38.7
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.1e-21 107.5 163 37.4
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 9.1e-21 104.4 139 40.3
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 9.1e-21 104.4 139 40.3
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 1.2e-20 104.0 71 71.8
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 5.9e-20 101.7 63 74.6
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 9.4e-18 94.4 172 40.7
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.2e-17 94.0 67 65.7
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 7.9e-17 91.3 96 45.8
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 7.9e-17 91.3 96 45.8
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 2.0e-15 86.7 70 60.0
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 1.7e-14 83.6 95 40.0
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.8e-14 82.8 55 70.9
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 1.2e-12 77.4 64 56.2
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 2.5e-10 69.7 99 40.4
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 5.2e-08 62.0 44 61.4


User provided reference genes

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