Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 5.2e-276 953.7 476 100.0
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 7.0e-257 890.2 504 89.9
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 3.3e-153 545.8 483 61.7
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 2.6e-150 536.2 477 62.9
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 7.5e-150 534.6 476 61.1
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 6.4e-149 531.6 511 57.3
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 4.6e-147 525.4 492 59.6
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 1.0e-146 524.2 476 60.5
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 1.7e-146 523.5 510 56.5
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 5.0e-146 521.9 473 61.5
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 1.5e-145 520.4 476 59.9
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 4.3e-145 518.8 474 60.1
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 3.6e-144 515.8 510 56.3
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 6.2e-144 515.0 510 56.7
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 1.8e-143 513.5 507 55.4
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 8.9e-143 511.1 475 57.5
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 8.9e-143 511.1 512 55.3
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 4.4e-142 508.8 476 60.5
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 1.3e-141 507.3 493 59.2
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 1.3e-141 507.3 510 55.3
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 2.2e-141 506.5 474 57.4
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 2.2e-141 506.5 473 57.7
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 3.7e-141 505.8 474 59.3
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 3.7e-141 505.8 474 59.3
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 3.7e-141 505.8 480 58.5
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 4.9e-141 505.4 475 59.6
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 6.4e-141 505.0 480 58.3
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 6.4e-141 505.0 475 58.5
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 2.4e-140 503.1 480 58.1
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 4.1e-140 502.3 506 55.1
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 7.8e-139 498.0 482 55.6
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.0e-138 497.7 474 58.9
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.3e-138 497.3 474 58.6
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 5.0e-138 495.4 506 54.5
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 6.6e-138 495.0 476 56.9
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 3.3e-137 492.7 473 55.6
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 5.6e-137 491.9 473 55.6
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 4.0e-135 485.7 488 54.7
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 6.8e-135 485.0 506 55.7
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 2.0e-134 483.4 475 59.2
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 1.7e-130 470.3 479 54.3
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 5.1e-130 468.8 478 53.3
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 1.9e-129 466.8 475 54.1
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 4.3e-129 465.7 475 54.1
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 7.3e-129 464.9 479 54.9
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.4e-127 460.7 497 51.9
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 1.8e-127 460.3 475 52.4
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 1.8e-127 460.3 477 55.8
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 2.3e-127 459.9 471 53.7
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 5.2e-127 458.8 478 53.3
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 2.0e-126 456.8 478 53.3
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 2.6e-126 456.4 475 52.6
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 3.4e-126 456.1 474 52.1
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 3.4e-126 456.1 476 52.5
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 4.4e-126 455.7 476 53.6
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 9.9e-126 454.5 478 53.6
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 6.4e-125 451.8 478 52.9
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 8.4e-125 451.4 476 51.9
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 1.4e-124 450.7 484 52.1
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 2.4e-124 449.9 476 52.5
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 9.2e-124 448.0 418 58.4
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 3.9e-122 442.6 474 51.5
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 5.6e-121 438.7 464 52.4
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 4.0e-119 432.6 484 47.9
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 5.2e-119 432.2 480 50.8
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 8.9e-119 431.4 477 50.9
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 1.2e-118 431.0 478 52.1
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 5.8e-118 428.7 485 52.4
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 2.2e-117 426.8 479 50.5
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 2.2e-117 426.8 477 51.2
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 1.4e-116 424.1 492 47.2
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 6.0e-115 418.7 548 47.6
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 1.3e-114 417.5 429 52.4
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 2.5e-113 413.3 485 48.7
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 7.3e-113 411.8 487 51.1
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 1.3e-112 411.0 479 49.5
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 2.1e-112 410.2 480 50.4
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 4.8e-112 409.1 477 47.2
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 8.1e-112 408.3 475 48.0
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 1.4e-108 397.5 418 52.4
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 7.9e-107 391.7 407 55.0
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 3.9e-106 389.4 505 48.7
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 4.0e-103 379.4 475 48.2
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 1.1e-100 371.3 449 50.3
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 3.2e-92 343.2 478 44.6
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 1.1e-89 334.7 468 41.2
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 2.1e-88 330.5 383 50.4
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 8.2e-88 328.6 409 48.4
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.3e-85 321.2 350 51.1
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 1.3e-85 321.2 474 42.8
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 6.5e-85 318.9 348 53.4
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 2.1e-83 313.9 475 42.9
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 2.6e-78 297.0 473 41.0
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 2.1e-75 287.3 472 40.5
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 1.8e-71 274.2 503 36.8
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 4.1e-71 273.1 210 67.6
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 9.1e-71 271.9 212 65.6
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 6.1e-67 259.2 346 46.2
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 7.9e-67 258.8 245 56.3
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 5.7e-65 252.7 172 71.5
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.3e-64 251.5 294 51.4
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 1.5e-60 238.0 550 31.3
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 3.6e-59 233.4 254 53.5
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 2.2e-56 224.2 486 32.1
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 4.1e-55 219.9 224 53.1
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 4.2e-52 209.9 123 82.9
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 1.5e-49 201.4 502 29.7
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 1.4e-47 194.9 274 43.4
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 3.2e-44 183.7 123 74.0
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 8.0e-35 152.5 170 44.7
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 4.3e-28 130.2 94 69.1
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 5.2e-26 123.2 69 84.1
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 6.8e-26 122.9 145 48.3
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 6.8e-26 122.9 150 46.7
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 6.8e-18 96.3 154 36.4
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 1.1e-15 89.0 56 76.8
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 1.4e-15 88.6 124 41.9
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 5.4e-15 86.7 91 53.8
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 1.1e-12 79.0 55 69.1
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 1.5e-09 68.6 172 31.4
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 2.4e-07 61.2 48 62.5
Medtr6g471100 Medicago truncatula HOM05D000162 ORTHO05D000090 1.6e-06 58.5 54 57.4


User provided reference genes

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