Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 3.7e-109 398.3 211 100.0
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 3.9e-74 282.0 215 78.1
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 1.6e-72 276.6 211 74.9
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 2.4e-71 272.7 216 73.6
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 2.6e-70 269.2 213 75.6
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 2.6e-70 269.2 222 71.6
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 3.4e-70 268.9 209 75.1
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 3.4e-70 268.9 212 75.9
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 4.4e-70 268.5 215 70.7
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 4.4e-70 268.5 229 71.6
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 5.8e-70 268.1 210 75.2
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 9.9e-70 267.3 215 74.9
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.3e-69 266.9 212 72.6
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 1.7e-69 266.5 222 70.7
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 1.7e-69 266.5 214 73.8
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 4.9e-69 265.0 209 73.7
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 8.4e-69 264.2 209 74.2
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 1.4e-68 263.5 211 74.4
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 1.2e-67 260.4 214 73.8
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 2.1e-67 259.6 236 66.9
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.7e-66 256.5 214 71.0
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 3.3e-65 252.3 211 69.7
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 5.6e-65 251.5 209 72.2
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 5.6e-65 251.5 211 70.1
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 1.3e-64 250.4 219 68.5
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 2.1e-64 249.6 225 65.8
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 2.1e-64 249.6 210 70.5
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 2.1e-64 249.6 209 73.7
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 3.6e-64 248.8 232 65.5
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 4.0e-63 245.4 231 66.7
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 1.5e-62 243.4 227 66.5
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 2.6e-62 242.7 222 65.3
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 4.5e-62 241.9 225 64.0
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 5.8e-62 241.5 224 65.6
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 1.3e-61 240.4 226 65.5
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 1.3e-61 240.4 213 68.1
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 1.3e-61 240.4 234 63.7
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 3.8e-61 238.8 211 69.2
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 8.4e-61 237.7 210 70.5
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 1.1e-60 237.3 212 67.5
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.1e-60 237.3 209 68.4
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 1.9e-60 236.5 216 67.1
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 3.2e-60 235.7 214 68.7
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 4.2e-60 235.3 260 56.9
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 7.1e-60 234.6 255 61.2
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 3.5e-59 232.3 272 57.4
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 3.5e-59 232.3 219 65.8
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 5.1e-58 228.4 262 58.4
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 5.1e-58 228.4 217 64.5
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 5.1e-58 228.4 216 65.7
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 1.3e-56 223.8 220 61.4
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.4e-55 220.3 211 65.4
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.8e-55 219.9 239 59.4
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.8e-55 219.9 212 64.6
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 6.9e-55 218.0 217 63.6
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 1.2e-54 217.2 220 62.3
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 1.3e-53 213.8 170 77.1
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 4.9e-53 211.8 210 63.8
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 1.4e-52 210.3 219 63.9
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 2.5e-52 209.5 179 67.6
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 3.2e-52 209.1 212 66.0
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 9.3e-52 207.6 168 73.8
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 2.1e-51 206.5 175 71.4
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 2.7e-51 206.1 217 59.4
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 6.0e-51 204.9 209 64.6
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 1.0e-50 204.1 180 68.3
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 3.0e-50 202.6 167 72.5
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 3.0e-50 202.6 212 58.5
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 2.5e-49 199.5 222 58.6
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 5.7e-49 198.4 171 68.4
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 6.9e-47 191.4 170 67.1
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.2e-46 190.7 223 57.8
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 1.2e-46 190.7 212 57.1
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 1.5e-46 190.3 186 64.5
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 1.3e-45 187.2 95 98.9
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 3.8e-45 185.7 209 56.5
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.9e-44 183.3 166 65.1
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 6.7e-42 174.9 221 51.6
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 8.2e-40 167.9 167 64.7
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 1.5e-38 163.7 95 90.5
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.5e-38 163.7 95 93.7
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 3.4e-38 162.5 95 92.6
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 3.4e-38 162.5 95 92.6
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 5.9e-38 161.8 95 91.6
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 5.9e-38 161.8 174 58.0
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 1.0e-37 161.0 97 89.7
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.3e-37 160.6 100 88.0
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 1.7e-37 160.2 95 86.3
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 1.7e-37 160.2 95 86.3
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 1.7e-37 160.2 95 91.6
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 1.7e-37 160.2 95 90.5
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 1.7e-37 160.2 95 91.6
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 2.9e-37 159.5 95 89.5
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 9.4e-36 154.5 231 48.9
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 2.7e-35 152.9 280 43.6
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 6.1e-35 151.8 274 44.2
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 8.8e-34 147.9 188 55.3
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 2.0e-33 146.7 115 68.7
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 3.7e-32 142.5 244 45.9
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 5.3e-31 138.7 209 49.8
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 4.5e-30 135.6 295 41.4
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 1.7e-29 133.7 209 48.3
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 8.5e-29 131.3 146 59.6
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 1.1e-28 131.0 320 39.7
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 1.9e-28 130.2 213 45.1
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 6.7e-26 121.7 157 54.1
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 3.7e-24 115.9 171 48.0
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 5.3e-23 112.1 282 36.2
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 1.2e-22 110.9 103 68.0
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 3.8e-21 105.9 110 64.5
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 5.0e-21 105.5 161 52.2
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 4.2e-20 102.4 119 56.3
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 2.7e-19 99.8 213 38.5
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 6.1e-19 98.6 66 83.3
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 6.1e-19 98.6 52 94.2
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.1e-17 94.4 179 41.3
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 5.7e-17 92.0 115 52.2
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 5.3e-15 85.5 166 41.6
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 5.3e-15 85.5 166 41.6
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 7.0e-15 85.1 138 46.4
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.6e-14 84.0 170 38.2
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 8.5e-13 78.2 114 50.0
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 2.5e-12 76.6 56 73.2
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 2.7e-11 73.2 88 53.4
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 1.8e-10 70.5 114 44.7
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 2.6e-09 66.6 123 43.9
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 5.7e-09 65.5 61 57.4
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 9.8e-09 64.7 43 86.0
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 1.7e-08 63.9 44 77.3
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.4e-07 60.8 35 88.6
vmacro17760 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 5.9e-06 55.5 92 44.6


User provided reference genes

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