Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G062700 Populus trichocarpa HOM05D007852 ORTHO05D009916 1.9e-63 245.7 129 100.0
Sabra04G0041600 Salix brachista HOM05D007852 ORTHO05D009916 7.2e-39 164.1 95 90.5
Gorai.010G240500 Gossypium raimondii HOM05D007852 ORTHO05D009916 1.9e-23 112.8 100 59.0
Gohir.D06G206100 Gossypium hirsutum HOM05D007852 ORTHO05D009916 4.3e-23 111.7 100 58.0
Gohir.A06G198800 Gossypium hirsutum HOM05D007852 ORTHO05D009916 5.6e-23 111.3 100 59.0
Atru.chr10.1525 Acer truncatum HOM05D007852 ORTHO05D009916 1.7e-19 99.8 96 57.3
COL.COLO4_31211 Corchorus olitorius HOM05D007852 ORTHO05D009916 3.7e-19 98.6 88 60.2
Ciclev10018381m.g Citrus clementina HOM05D007852 ORTHO05D009916 4.9e-19 98.2 100 56.0
Thecc.06G163700 Theobroma cacao HOM05D007852 ORTHO05D009916 4.9e-19 98.2 63 71.4
Duzib235G0245 Durio zibethinus HOM05D007852 ORTHO05D009916 4.1e-18 95.1 96 56.2
Hma1.2p1_1749F.1_g300710 Hydrangea macrophylla HOM05D007852 ORTHO05D009916 2.0e-17 92.8 94 52.1
Ciclev10006937m.g Citrus clementina HOM05D007852 ORTHO05D009916 2.7e-17 92.4 100 53.0
Manes.16G043700 Manihot esculenta HOM05D007852 ORTHO05D009916 2.7e-17 92.4 85 61.2
QL05p050225 Quercus lobata HOM05D007852 ORTHO05D009916 1.3e-16 90.1 86 52.3
Prupe.4G068400 Prunus persica HOM05D007852 ORTHO05D009916 1.7e-16 89.7 88 53.4
Ciclev10002903m.g Citrus clementina HOM05D007852 ORTHO05D009916 5.0e-16 88.2 101 49.5
TWI09G0702 Tripterygium wilfordii HOM05D007852 ORTHO05D009916 5.0e-16 88.2 70 60.0
GSVIVG01021272001 Vitis vinifera HOM05D007852 ORTHO05D009916 1.9e-15 86.3 79 53.2
Carub.0001s2803 Capsella rubella HOM05D007852 ORTHO05D009916 1.2e-14 83.6 93 52.7
Sed0006029 Sechium edule HOM05D007852 ORTHO05D009916 1.6e-14 83.2 94 46.8
AUR62039495 Chenopodium quinoa HOM05D007852 ORTHO05D009916 8.0e-14 80.9 93 43.0
MSTRG.16177 Avicennia marina HOM05D007852 ORTHO05D009916 1.1e-13 80.5 107 43.0
AL1G43620 Arabidopsis lyrata HOM05D007852 ORTHO05D009916 1.4e-13 80.1 91 50.5
ClCG03G007370 Citrullus lanatus HOM05D007852 ORTHO05D009916 1.4e-13 80.1 75 54.7
Dinv12735 Davidia involucrata HOM05D007852 ORTHO05D009916 2.3e-13 79.3 95 48.4
AUR62041804 Chenopodium quinoa HOM05D007852 ORTHO05D009916 3.1e-13 79.0 58 53.4
Sp1g25680 Schrenkiella parvula HOM05D007852 ORTHO05D009916 3.1e-13 79.0 75 54.7
CARHR029160 Cardamine hirsuta HOM05D007852 ORTHO05D009916 5.2e-13 78.2 76 53.9
RcHm_v2.0_Chr5g0011991 Rosa chinensis HOM05D007852 ORTHO05D009916 8.9e-13 77.4 88 47.7
Lj6g0024251 Lotus japonicus HOM05D007852 ORTHO05D009916 1.2e-12 77.0 46 65.2
Oeu001067.1 Olea europaea HOM05D007852 ORTHO05D009916 1.5e-12 76.6 44 68.2
TAR626G0530 Trochodendron aralioides HOM05D007852 ORTHO05D009916 2.0e-12 76.3 98 38.8
VMungo0540G1707 Vigna mungo HOM05D007852 ORTHO05D009916 2.0e-12 76.3 106 44.3
arahy.Tifrunner.gnm1.ann1.4JXB6U Arachis hypogaea HOM05D007852 ORTHO05D009916 2.6e-12 75.9 45 68.9
BcaB03g12179 Brassica carinata HOM05D007852 ORTHO05D009916 2.6e-12 75.9 79 50.6
BcaC01g00138 Brassica carinata HOM05D007852 ORTHO05D009916 3.4e-12 75.5 77 50.6
Ah.14g086910 Amaranthus hybridus HOM05D000275 ORTHO05D009916 4.4e-12 75.1 81 48.1
BcaC06g35465 Brassica carinata HOM05D007852 ORTHO05D009916 4.4e-12 75.1 94 45.7
BolC3t19875H Brassica oleracea HOM05D007852 ORTHO05D009916 4.4e-12 75.1 75 52.0
Thhalv10009162m.g Eutrema salsugineum HOM05D007852 ORTHO05D009916 4.4e-12 75.1 76 51.3
Lalb_Chr18g0054901 Lupinus albus HOM05D007852 ORTHO05D009916 4.4e-12 75.1 45 64.4
Glyma.13G225200 Glycine max HOM05D007852 ORTHO05D009916 5.8e-12 74.7 91 46.2
Nn3g21053 Nelumbo nucifera HOM05D007852 ORTHO05D009916 5.8e-12 74.7 97 44.3
BcaC05g26993 Brassica carinata HOM05D007852 ORTHO05D009916 7.5e-12 74.3 107 43.0
A07p10220 Brassica napus HOM05D007852 ORTHO05D009916 7.5e-12 74.3 46 67.4
C05p28530 Brassica napus HOM05D007852 ORTHO05D009916 7.5e-12 74.3 107 43.0
BolC5t31577H Brassica oleracea HOM05D007852 ORTHO05D009916 7.5e-12 74.3 107 43.0
FAN21G2050 Fragaria x ananassa HOM05D007852 ORTHO05D009916 7.5e-12 74.3 106 41.5
Glyma.08G120000 Glycine max HOM05D007852 ORTHO05D009916 7.5e-12 74.3 90 44.4
A08p24840 Brassica napus HOM05D007852 ORTHO05D009916 9.8e-12 73.9 95 46.3
BraA08t34439Z Brassica rapa HOM05D007852 ORTHO05D009916 9.8e-12 73.9 95 46.3
Hund21452 Selenicereus undatus HOM05D007852 ORTHO05D009916 9.8e-12 73.9 95 41.1
MELO3C017616.2 Cucumis melo HOM05D007852 ORTHO05D009916 1.3e-11 73.6 70 52.9
SGA_v2.0_scaffold1G00101 Striga asiatica HOM05D007852 ORTHO05D009916 1.3e-11 73.6 109 40.4
BraA07t28818Z Brassica rapa HOM05D007852 ORTHO05D009916 1.7e-11 73.2 44 70.5
Lalb_Chr15g0086451 Lupinus albus HOM05D007852 ORTHO05D009916 1.7e-11 73.2 47 59.6
Phvul.002G242100 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 1.7e-11 73.2 54 61.1
C03p76190 Brassica napus HOM05D007852 ORTHO05D009916 2.2e-11 72.8 75 50.7
FAN16G0821 Fragaria x ananassa HOM05D007852 ORTHO05D009916 2.2e-11 72.8 88 45.5
C07p15740 Brassica napus HOM05D007852 ORTHO05D009916 2.9e-11 72.4 92 45.7
BolC7t42066H Brassica oleracea HOM05D007852 ORTHO05D009916 2.9e-11 72.4 92 45.7
Solyc02g071940.1 Solanum lycopersicum HOM05D007852 ORTHO05D009916 2.9e-11 72.4 96 43.8
MELO3C002684.2 Cucumis melo HOM05D007852 ORTHO05D009916 4.9e-11 71.6 93 41.9
Sc05g0006790 Simmondsia chinensis HOM05D007852 ORTHO05D009916 4.9e-11 71.6 48 58.3
Phvul.006G171300 Phaseolus vulgaris HOM05D007852 ORTHO05D009916 1.1e-10 70.5 95 46.3
CiPaw.09G136400 Carya illinoinensis HOM05D007852 ORTHO05D009916 1.4e-10 70.1 48 56.2
Nitab4.5_0008572g0040 Nicotiana tabacum HOM05D007852 ORTHO05D009916 1.4e-10 70.1 59 50.8
Actinidia39528 Actinidia chinensis HOM05D007852 ORTHO05D009916 1.9e-10 69.7 96 41.7
EL10Ac8g19876 Beta vulgaris HOM05D007852 ORTHO05D009916 1.9e-10 69.7 54 55.6
Sopen02g020930 Solanum pennellii HOM05D007852 ORTHO05D009916 1.9e-10 69.7 96 42.7
Migut.M00995 Erythranthe guttata HOM05D007852 ORTHO05D009916 2.4e-10 69.3 44 61.4
Glyma.05G162400 Glycine max HOM05D007852 ORTHO05D009916 2.4e-10 69.3 42 69.0
Zm00001eb094410 Zea mays HOM05D007852 ORTHO05D009916 2.4e-10 69.3 85 41.2
Lsat_1_v5_gn_4_49360 Lactuca sativa HOM05D007852 ORTHO05D009916 4.1e-10 68.6 44 61.4
Medtr8g087660 Medicago truncatula HOM05D007852 ORTHO05D009916 4.1e-10 68.6 45 62.2
Psat7g067600 Pisum sativum HOM05D007852 ORTHO05D009916 4.1e-10 68.6 54 53.7
DCAR_003974 Daucus carota HOM05D007852 ORTHO05D009916 1.2e-09 67.0 97 42.3
Os01g0729500 Oryza sativa ssp. japonica HOM05D007852 ORTHO05D009916 2.7e-09 65.9 49 53.1
Mapoly0042s0091 Marchantia polymorpha HOM05D007852 ORTHO05D009916 3.5e-09 65.5 69 40.6
PGSC0003DMG400028458 Solanum tuberosum HOM05D007852 ORTHO05D009916 6.0e-09 64.7 92 39.1
ATR0820G245 Amborella trichopoda HOM05D007852 ORTHO05D009916 7.8e-09 64.3 44 54.5
Mapoly0039s0106 Marchantia polymorpha HOM05D007852 ORTHO05D009916 9.5e-07 57.4 45 46.7
Pp3c20_15620 Physcomitrium patens HOM05D007852 ORTHO05D009916 4.7e-06 55.1 45 48.9


User provided reference genes

Program Settings