Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.4e-48 196.1 106 100.0
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 1.9e-37 159.1 106 82.1
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 7.5e-34 147.1 107 79.4
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 3.5e-31 138.3 106 73.6
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 3.4e-26 121.7 107 66.4
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 3.7e-25 118.2 106 67.0
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 1.0e-22 110.2 106 61.3
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 3.0e-22 108.6 107 62.6
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.5e-21 106.3 108 62.0
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 3.3e-21 105.1 102 63.7
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 7.3e-21 104.0 108 61.1
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 7.3e-21 104.0 108 61.1
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 1.2e-20 103.2 107 60.7
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 8.1e-20 100.5 106 56.6
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.0e-19 98.2 106 55.7
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 5.2e-19 97.8 106 54.7
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.2e-18 96.7 109 57.8
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.2e-18 96.7 106 55.7
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 4.4e-18 94.7 107 56.1
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 4.4e-18 94.7 109 57.8
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 7.5e-18 94.0 107 55.1
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 9.8e-18 93.6 107 54.2
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.3e-17 93.2 106 50.0
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.2e-17 92.4 107 53.3
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.2e-17 92.4 107 53.3
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 2.2e-17 92.4 107 53.3
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.9e-17 92.0 107 53.3
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 3.7e-17 91.7 107 53.3
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 4.9e-17 91.3 107 52.3
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 6.4e-17 90.9 52 84.6
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 6.4e-17 90.9 106 50.9
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 8.3e-17 90.5 109 56.0
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 1.1e-16 90.1 101 49.5
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 1.4e-16 89.7 97 51.5
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.4e-16 89.7 106 52.8
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.9e-16 89.4 107 52.3
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 4.1e-16 88.2 107 49.5
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 4.1e-16 88.2 108 52.8
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 4.1e-16 88.2 108 52.8
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 5.4e-16 87.8 98 52.0
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 5.4e-16 87.8 106 49.1
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 5.4e-16 87.8 99 53.5
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 7.1e-16 87.4 109 53.2
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 1.6e-15 86.3 107 50.5
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.1e-15 85.9 107 52.3
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 2.1e-15 85.9 106 49.1
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 2.7e-15 85.5 97 50.5
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 2.7e-15 85.5 101 53.5
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.5e-15 85.1 102 52.0
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 4.6e-15 84.7 107 48.6
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 4.6e-15 84.7 107 52.3
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 6.0e-15 84.3 107 49.5
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 6.0e-15 84.3 107 50.5
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 7.8e-15 84.0 106 52.8
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 1.0e-14 83.6 108 52.8
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 1.0e-14 83.6 107 48.6
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 1.3e-14 83.2 107 50.5
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 1.3e-14 83.2 108 49.1
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.7e-14 82.8 107 48.6
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 2.3e-14 82.4 105 45.7
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 3.9e-14 81.6 107 51.4
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 3.9e-14 81.6 107 47.7
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 5.1e-14 81.3 102 50.0
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 6.6e-14 80.9 101 48.5
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 8.6e-14 80.5 106 49.1
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.9e-13 79.3 106 52.8
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 2.5e-13 79.0 98 50.0
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 5.6e-13 77.8 106 47.2
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 7.3e-13 77.4 101 47.5
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 9.5e-13 77.0 111 46.8
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 9.5e-13 77.0 63 61.9
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 1.2e-12 76.6 98 48.0
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.2e-12 76.6 108 45.4
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 1.6e-12 76.3 71 63.4
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 1.6e-12 76.3 53 67.9
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 2.1e-12 75.9 100 46.0
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 2.8e-12 75.5 98 45.9
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 3.6e-12 75.1 98 44.9
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 3.6e-12 75.1 97 52.6
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 4.7e-12 74.7 100 43.0
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 4.7e-12 74.7 100 43.0
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 4.7e-12 74.7 100 43.0
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 4.7e-12 74.7 107 44.9
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 1.4e-11 73.2 100 41.0
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 1.4e-11 73.2 100 41.0
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.4e-11 73.2 99 47.5
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.8e-11 72.8 108 46.3
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 1.8e-11 72.8 98 43.9
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 4.0e-11 71.6 63 61.9
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 4.0e-11 71.6 107 43.0
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 4.0e-11 71.6 54 66.7
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 5.2e-11 71.2 98 42.9
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 5.2e-11 71.2 107 44.9
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 8.9e-11 70.5 98 42.9
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 1.2e-10 70.1 98 42.9
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 1.2e-10 70.1 53 62.3
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.5e-10 69.7 110 43.6
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 1.5e-10 69.7 102 43.1
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 1.5e-10 69.7 102 43.1
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 2.0e-10 69.3 100 43.0
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 2.6e-10 68.9 106 48.1
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 3.4e-10 68.6 106 42.5
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 4.4e-10 68.2 107 40.2
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 5.8e-10 67.8 105 41.0
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 7.6e-10 67.4 86 51.2
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 7.6e-10 67.4 87 50.6
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 9.9e-10 67.0 96 45.8
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.3e-09 66.6 102 43.1
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.3e-09 66.6 96 41.7
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 1.7e-09 66.2 109 44.0
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 1.7e-09 66.2 106 41.5
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 1.7e-09 66.2 112 39.3
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 3.8e-09 65.1 103 42.7
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 3.8e-09 65.1 103 42.7
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 3.8e-09 65.1 103 42.7
Gohir.A01G049400 Gossypium hirsutum HOM05D008890 ORTHO05D004248 6.4e-09 64.3 107 41.1
EL10Ac8g20558 Beta vulgaris HOM05D005059 ORTHO05D004248 8.4e-09 63.9 103 46.6
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 1.1e-08 63.5 98 38.8
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 1.1e-08 63.5 98 38.8
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 1.1e-08 63.5 99 40.4
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 1.1e-08 63.5 53 54.7
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 1.1e-08 63.5 53 64.2
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 1.4e-08 63.2 98 38.8
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 1.4e-08 63.2 98 38.8
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 1.4e-08 63.2 98 38.8
Duzib213G0473 Durio zibethinus HOM05D008890 ORTHO05D004248 1.9e-08 62.8 105 38.1
Duzib213G0742 Durio zibethinus HOM05D008890 ORTHO05D004248 1.9e-08 62.8 105 37.1
Gohir.D01G040000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 3.2e-08 62.0 107 41.1
Gorai.002G049600 Gossypium raimondii HOM05D008890 ORTHO05D004248 3.2e-08 62.0 107 41.1
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 5.4e-08 61.2 105 40.0
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 7.1e-08 60.8 106 41.5
Thecc.07G128200 Theobroma cacao HOM05D008890 ORTHO05D004248 9.2e-08 60.5 107 42.1
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.2e-07 60.1 53 62.3
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 1.2e-07 60.1 106 35.8
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 1.6e-07 59.7 108 45.4
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.1e-07 59.3 100 41.0
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 2.1e-07 59.3 106 40.6
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 2.7e-07 58.9 108 44.4
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 3.5e-07 58.5 109 42.2
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 3.5e-07 58.5 105 38.1
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 6.0e-07 57.8 53 60.4
Gohir.A01G050000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 6.0e-07 57.8 106 42.5
Gohir.D01G040100 Gossypium hirsutum HOM05D008890 ORTHO05D004248 6.0e-07 57.8 106 41.5
Gorai.002G049700 Gossypium raimondii HOM05D008890 ORTHO05D004248 6.0e-07 57.8 106 41.5
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 1.3e-06 56.6 99 40.4
Gorai.002G049800 Gossypium raimondii HOM05D008890 ORTHO05D004248 1.3e-06 56.6 106 41.5
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 1.7e-06 56.2 53 54.7
MELO3C035718.2 Cucumis melo HOM05D005059 ORTHO05D004248 1.7e-06 56.2 95 44.2
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 1.7e-06 56.2 103 39.8
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 2.3e-06 55.8 52 55.8
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 3.0e-06 55.5 99 40.4
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 3.0e-06 55.5 99 40.4
Lalb_Chr13g0295291 Lupinus albus HOM05D005059 ORTHO05D004248 3.0e-06 55.5 76 50.0
EL10Ac4g08366 Beta vulgaris HOM05D005059 ORTHO05D004248 3.9e-06 55.1 80 48.8
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 3.9e-06 55.1 99 39.4
unitig_744.g24543 Utricularia gibba HOM05D005059 ORTHO05D004248 3.9e-06 55.1 50 58.0
BraA08t35043Z Brassica rapa HOM05D009829 ORTHO05D012418 5.1e-06 54.7 99 39.4
Gohir.D01G040200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.1e-06 54.7 106 42.5
Gohir.D01G040250 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.1e-06 54.7 106 39.6
Gohir.A01G049800 Gossypium hirsutum HOM05D008890 ORTHO05D004248 6.6e-06 54.3 106 38.7
Gohir.A01G049600 Gossypium hirsutum HOM05D008890 ORTHO05D004248 8.6e-06 53.9 106 40.6
Gohir.D01G040300 Gossypium hirsutum HOM05D008890 ORTHO05D004248 8.6e-06 53.9 106 40.6
Gorai.002G050000 Gossypium raimondii HOM05D008890 ORTHO05D004248 8.6e-06 53.9 106 40.6


User provided reference genes

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