Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.2e-52 209.5 103 100.0
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.1e-36 155.6 108 76.9
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 4.6e-36 154.5 100 81.0
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 5.8e-31 137.5 97 75.3
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 3.2e-29 131.7 97 69.1
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 4.1e-29 131.3 94 68.1
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 3.5e-28 128.3 103 63.1
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 1.0e-27 126.7 96 67.7
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 1.7e-27 125.9 99 68.7
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 3.0e-27 125.2 101 67.3
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 8.6e-27 123.6 101 62.4
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 1.9e-26 122.5 101 62.4
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 4.3e-26 121.3 101 63.4
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 7.3e-26 120.6 92 66.3
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 9.5e-26 120.2 102 60.8
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 3.6e-25 118.2 91 68.1
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 3.1e-24 115.2 101 61.4
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 6.8e-24 114.0 99 56.6
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.2e-23 113.2 81 69.1
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.2e-23 113.2 102 60.8
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 5.8e-23 110.9 102 57.8
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 7.6e-23 110.5 93 55.9
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 7.6e-23 110.5 74 70.3
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 9.9e-23 110.2 99 62.6
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 9.9e-23 110.2 93 58.1
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.3e-22 109.8 99 62.6
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.3e-22 109.8 85 62.4
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 1.3e-22 109.8 99 58.6
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.7e-22 109.4 96 60.4
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 2.9e-22 108.6 87 60.9
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 2.9e-22 108.6 98 60.2
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 2.9e-22 108.6 102 55.9
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 6.4e-22 107.5 93 59.1
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 8.4e-22 107.1 96 59.4
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.1e-21 106.7 96 59.4
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 2.4e-21 105.5 97 57.7
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 2.4e-21 105.5 97 57.7
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 7.1e-21 104.0 95 51.6
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 9.2e-21 103.6 97 57.7
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 1.2e-20 103.2 87 57.5
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 1.6e-20 102.8 106 50.0
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.1e-20 102.4 91 58.2
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 2.1e-20 102.4 83 56.6
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 2.1e-20 102.4 91 53.8
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 2.1e-20 102.4 84 59.5
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 2.7e-20 102.1 97 54.6
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 6.0e-20 100.9 77 64.9
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 7.8e-20 100.5 87 65.5
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 1.3e-19 99.8 103 57.3
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 1.7e-19 99.4 88 54.5
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 2.3e-19 99.0 83 54.2
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 3.0e-19 98.6 83 59.0
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 3.9e-19 98.2 88 55.7
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 8.7e-19 97.1 94 54.3
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 8.7e-19 97.1 99 55.6
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 8.7e-19 97.1 99 55.6
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 1.1e-18 96.7 82 56.1
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 1.5e-18 96.3 110 53.6
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.9e-18 95.9 92 58.7
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 2.5e-18 95.5 96 51.0
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 2.5e-18 95.5 77 58.4
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.3e-18 95.1 56 73.2
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 4.3e-18 94.7 104 49.0
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 4.3e-18 94.7 90 55.6
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 5.6e-18 94.4 88 53.4
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 7.3e-18 94.0 77 58.4
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 7.3e-18 94.0 92 55.4
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 9.6e-18 93.6 96 50.0
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.3e-17 93.2 105 55.2
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 1.3e-17 93.2 85 55.3
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 1.3e-17 93.2 77 57.1
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.1e-17 92.4 92 57.6
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.8e-17 92.0 92 53.3
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 3.6e-17 91.7 91 50.5
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 8.1e-17 90.5 99 52.5
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 8.1e-17 90.5 87 51.7
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 1.1e-16 90.1 87 51.7
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 1.1e-16 90.1 92 50.0
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 1.1e-16 90.1 109 49.5
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 1.1e-16 90.1 83 51.8
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 1.4e-16 89.7 97 50.5
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 1.8e-16 89.4 95 51.6
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.8e-16 89.4 101 53.5
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 1.8e-16 89.4 93 51.6
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 2.4e-16 89.0 87 55.2
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.1e-16 88.6 84 58.3
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 4.0e-16 88.2 80 58.8
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 4.0e-16 88.2 89 47.2
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.9e-16 87.4 102 51.0
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 9.0e-16 87.0 97 51.5
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 1.2e-15 86.7 106 51.9
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.2e-15 86.7 83 53.0
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.5e-15 86.3 103 49.5
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.5e-15 86.3 103 49.5
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 2.0e-15 85.9 75 56.0
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 2.0e-15 85.9 97 49.5
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 2.0e-15 85.9 97 49.5
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 2.0e-15 85.9 86 53.5
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 2.6e-15 85.5 74 55.4
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 2.6e-15 85.5 74 55.4
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.4e-15 85.1 60 68.3
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 3.4e-15 85.1 79 57.0
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 3.4e-15 85.1 98 51.0
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.4e-15 84.7 105 48.6
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 7.6e-15 84.0 72 59.7
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 9.9e-15 83.6 101 45.5
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 9.9e-15 83.6 82 56.1
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.7e-14 82.8 94 53.2
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.7e-14 82.8 81 59.3
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 2.2e-14 82.4 92 45.7
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 2.9e-14 82.0 90 52.2
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 2.9e-14 82.0 88 53.4
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 3.8e-14 81.6 77 55.8
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.9e-14 81.3 61 62.3
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 4.9e-14 81.3 85 45.9
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 4.9e-14 81.3 69 60.9
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 8.4e-14 80.5 100 48.0
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 1.1e-13 80.1 89 47.2
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 3.2e-13 78.6 85 55.3
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 5.4e-13 77.8 85 49.4
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 7.1e-13 77.4 105 45.7
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 7.1e-13 77.4 77 51.9
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 7.1e-13 77.4 71 57.7
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 7.1e-13 77.4 76 53.9
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.2e-12 76.6 78 48.7
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 1.2e-12 76.6 76 55.3
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 1.2e-12 76.6 56 60.7
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 2.1e-12 75.9 100 44.0
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 6.0e-12 74.3 97 40.2
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 6.0e-12 74.3 109 46.8
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 7.8e-12 73.9 88 52.3
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 1.7e-11 72.8 109 46.8
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 2.3e-11 72.4 90 50.0
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 3.0e-11 72.0 88 51.1
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 3.9e-11 71.6 85 51.8
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.1e-10 70.1 100 48.0
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 4.3e-10 68.2 91 45.1
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 5.6e-10 67.8 62 54.8
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 1.3e-09 66.6 74 51.4
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.1e-09 65.9 48 64.6
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 3.6e-09 65.1 99 44.4
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.1e-08 63.5 98 44.9
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 1.1e-08 63.5 46 67.4
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.8e-08 62.8 76 50.0
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 4.0e-08 61.6 63 52.4
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 6.9e-08 60.8 45 60.0
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 6.9e-08 60.8 48 62.5
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 4.5e-07 58.2 48 54.2


User provided reference genes

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