Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 5.5e-142 508.4 432 100.0
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 4.8e-130 468.8 429 91.8
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 2.0e-120 436.8 388 92.8
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 1.2e-117 427.6 384 92.7
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 4.4e-115 419.1 388 91.8
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 1.6e-112 410.6 388 85.6
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 3.1e-100 369.8 384 80.7
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 1.4e-97 360.9 385 76.1
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 6.6e-95 352.1 385 77.4
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 4.3e-94 349.4 385 74.8
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.6e-93 347.4 384 81.2
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 3.6e-93 346.3 386 75.1
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 8.1e-93 345.1 387 77.3
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.8e-92 344.0 432 71.1
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 3.1e-92 343.2 385 75.1
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.1e-92 343.2 386 76.4
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.0e-92 342.8 384 80.7
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 2.0e-91 340.5 386 78.0
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.6e-91 340.1 383 78.3
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 2.6e-91 340.1 432 70.8
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 3.4e-91 339.7 386 77.2
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 4.4e-91 339.3 389 73.5
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 7.6e-91 338.6 432 70.6
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 9.9e-91 338.2 386 79.0
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.1e-89 334.7 383 74.9
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 1.1e-89 334.7 430 73.3
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 3.2e-89 333.2 388 78.6
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 9.2e-89 331.6 385 75.1
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.3e-87 327.0 357 77.3
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.9e-87 326.2 384 76.6
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 1.1e-86 324.7 383 76.5
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.1e-86 324.7 383 76.5
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.5e-86 324.3 384 76.0
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 1.9e-86 323.9 388 75.5
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.9e-86 323.9 384 76.0
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 3.3e-86 323.2 380 73.9
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 4.3e-86 322.8 384 76.3
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.6e-85 320.9 385 80.5
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 1.1e-84 318.2 383 77.3
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.2e-84 315.8 429 70.2
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 6.9e-84 315.5 385 73.5
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 6.9e-84 315.5 385 76.4
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 6.9e-84 315.5 383 76.2
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 4.4e-83 312.8 386 73.6
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.8e-82 309.7 386 70.7
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 3.8e-82 309.7 186 81.2
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 2.4e-81 307.0 388 72.4
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 5.4e-81 305.8 386 69.9
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.2e-80 304.7 383 71.5
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 1.6e-80 304.3 385 74.3
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 7.8e-80 302.0 385 68.8
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 1.3e-79 301.2 383 71.8
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 3.0e-79 300.1 360 76.7
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 5.1e-79 299.3 434 68.9
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 3.3e-78 296.6 386 74.1
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 3.3e-78 296.6 383 71.0
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 1.3e-77 294.7 383 74.9
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 1.6e-77 294.3 351 74.1
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 2.8e-77 293.5 383 66.8
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 3.6e-77 293.1 383 74.7
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 4.8e-77 292.7 386 71.5
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 8.1e-77 292.0 383 73.9
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 1.8e-76 290.8 383 72.1
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 3.1e-76 290.0 383 73.6
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 9.0e-76 288.5 384 73.2
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 1.5e-75 287.7 384 72.1
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 2.6e-75 287.0 386 76.2
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 3.4e-75 286.6 394 67.3
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 4.5e-75 286.2 387 73.4
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 7.6e-75 285.4 387 71.1
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 1.3e-74 284.6 395 73.4
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.7e-74 284.3 388 70.9
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 1.7e-74 284.3 386 71.2
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 2.9e-74 283.5 321 73.5
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 2.9e-74 283.5 386 70.2
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 6.4e-74 282.3 320 75.0
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.1e-73 281.6 370 72.4
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 2.4e-73 280.4 370 69.2
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 7.1e-73 278.9 371 68.7
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 9.3e-73 278.5 392 69.9
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.2e-72 278.1 385 71.7
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.1e-72 277.3 385 69.6
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 3.5e-72 276.6 326 75.2
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 1.3e-71 274.6 383 72.8
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 2.3e-71 273.9 396 68.4
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 3.0e-71 273.5 387 65.4
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 6.7e-71 272.3 384 69.0
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 6.7e-71 272.3 388 66.2
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 4.3e-70 269.6 380 70.5
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 1.6e-69 267.7 389 63.2
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 2.1e-69 267.3 381 68.0
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.1e-69 267.3 387 69.8
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 5.3e-68 262.7 398 66.3
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 9.0e-68 261.9 328 74.1
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.2e-67 261.5 398 66.1
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 1.2e-67 261.5 391 69.1
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 2.0e-67 260.8 389 69.4
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 3.4e-67 260.0 387 68.2
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 9.9e-67 258.5 391 71.9
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 9.9e-67 258.5 395 65.1
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 1.3e-66 258.1 394 66.8
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 1.3e-66 258.1 394 66.8
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 1.3e-66 258.1 394 66.8
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 4.9e-66 256.1 395 66.8
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 4.9e-66 256.1 395 66.8
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 6.4e-66 255.8 384 69.0
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 6.4e-66 255.8 387 67.7
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 7.1e-65 252.3 392 68.9
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 1.2e-64 251.5 396 71.2
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 1.2e-64 251.5 396 71.2
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 2.7e-64 250.4 373 69.2
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 1.3e-63 248.1 389 71.7
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.8e-63 247.7 395 70.6
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 3.0e-63 246.9 349 67.9
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 3.0e-63 246.9 390 64.9
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 1.9e-62 244.2 385 61.6
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 1.3e-61 241.5 384 69.8
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 2.8e-61 240.4 386 71.5
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 3.7e-61 240.0 387 69.5
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 3.7e-61 240.0 389 66.1
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 4.8e-61 239.6 322 70.2
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 9.0e-60 235.3 387 62.3
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.0e-58 231.9 382 63.4
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.9e-57 227.6 397 62.2
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 8.2e-53 212.2 392 58.4
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 1.5e-51 208.0 389 58.1
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 7.7e-51 205.7 390 67.9
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.0e-50 205.3 387 68.0
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.0e-50 205.3 387 68.0
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 1.0e-50 205.3 371 42.0
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 2.2e-50 204.1 387 68.2
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 5.5e-49 199.5 329 64.7
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.2e-48 198.4 381 68.5
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 8.8e-47 192.2 396 60.4
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 2.0e-46 191.0 376 65.7
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 5.7e-46 189.5 270 72.6
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.8e-44 184.5 386 63.5
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.5e-43 181.4 397 59.9
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 3.4e-43 180.3 388 42.8
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 1.3e-42 178.3 193 53.9
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 1.7e-42 177.9 295 68.8
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 3.8e-42 176.8 188 53.2
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 3.8e-42 176.8 286 75.9
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 4.2e-41 173.3 342 54.7
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 2.1e-40 171.0 327 64.8
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 7.9e-40 169.1 398 59.8
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 3.1e-36 157.1 393 52.4
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.7e-34 151.4 170 48.2
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 2.9e-34 150.6 125 61.6
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.2e-32 145.2 396 49.5
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 2.7e-32 144.1 279 72.8
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 3.9e-31 140.2 250 82.0
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 2.2e-29 134.4 256 67.6
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 1.1e-28 132.1 397 44.8
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 5.9e-27 126.3 196 43.4
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 5.0e-26 123.2 400 53.5
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 9.7e-22 109.0 108 69.4
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 2.8e-21 107.5 91 69.2
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 2.0e-19 101.3 172 43.6
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 3.2e-17 94.0 120 44.2
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 8.0e-16 89.4 94 53.2
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 3.0e-15 87.4 249 57.4
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 5.7e-14 83.2 101 47.5
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 2.2e-13 81.3 48 75.0
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 2.4e-12 77.8 192 29.7
Cfa019730 Carpinus fangiana HOM05D004193 ORTHO05D004862 5.4e-12 76.6 48 70.8
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.5e-09 67.8 85 45.9
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 6.1e-08 63.2 103 56.3
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 1.2e-06 58.9 45 57.8
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 4.4e-06 57.0 44 56.8
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 9.8e-06 55.8 155 27.1


User provided reference genes

Program Settings