Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 1.0e-110 404.1 319 100.0
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 2.4e-104 382.9 319 85.9
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 7.1e-96 354.8 320 81.9
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 3.5e-95 352.4 325 79.7
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 4.6e-95 352.1 317 82.3
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 7.9e-95 351.3 318 82.4
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 7.9e-95 351.3 319 79.6
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 1.3e-94 350.5 318 81.1
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 1.8e-94 350.1 327 78.6
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 9.6e-93 344.4 325 78.2
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 2.4e-91 339.7 319 79.6
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 5.3e-91 338.6 318 79.2
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 6.9e-91 338.2 318 79.2
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 2.0e-90 336.7 317 82.0
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 7.6e-90 334.7 318 78.6
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 1.0e-89 334.3 318 78.0
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 1.0e-89 334.3 317 79.5
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 8.4e-89 331.3 318 82.7
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 8.4e-89 331.3 319 75.5
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 1.4e-88 330.5 318 81.1
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 1.4e-88 330.5 318 84.3
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 9.3e-88 327.8 309 80.3
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 2.7e-87 326.2 319 81.5
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 2.7e-87 326.2 319 77.4
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 4.6e-87 325.5 319 77.7
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 6.7e-86 321.6 317 77.3
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 8.7e-86 321.2 317 77.3
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 8.7e-86 321.2 317 77.3
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 2.5e-85 319.7 319 83.4
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 4.3e-85 318.9 319 82.4
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 4.3e-85 318.9 317 80.8
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 5.7e-85 318.5 317 77.0
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 1.4e-83 313.9 319 87.8
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 4.5e-82 308.9 318 80.8
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 7.7e-82 308.1 307 77.9
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 1.3e-81 307.4 317 80.1
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 1.3e-81 307.4 319 84.6
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 3.2e-80 302.8 319 79.0
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 4.6e-79 298.9 317 79.2
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 7.9e-79 298.1 317 81.4
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.0e-78 297.7 318 79.2
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.4e-78 297.4 309 74.8
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.8e-78 297.0 318 79.2
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.8e-78 297.0 309 74.8
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 8.8e-78 294.7 317 79.2
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 1.1e-77 294.3 317 77.6
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 2.0e-77 293.5 317 78.5
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 4.8e-76 288.9 318 78.9
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 2.0e-74 283.5 251 89.6
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 2.0e-74 283.5 251 89.6
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 1.7e-73 280.4 251 90.4
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 1.7e-73 280.4 276 83.0
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 8.5e-73 278.1 252 88.5
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 1.1e-72 277.7 306 79.7
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.1e-72 277.7 252 87.7
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.4e-72 277.3 252 87.7
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 2.5e-72 276.6 251 87.6
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 3.2e-72 276.2 252 88.1
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 3.2e-72 276.2 253 87.7
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 5.5e-72 275.4 251 88.4
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 5.5e-72 275.4 251 87.6
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 7.9e-71 271.6 317 77.0
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.8e-70 270.4 251 87.3
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 2.3e-70 270.0 251 86.5
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 3.0e-70 269.6 248 87.5
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 5.1e-70 268.9 251 86.1
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 6.7e-70 268.5 248 88.7
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 1.1e-69 267.7 251 86.1
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 2.0e-69 266.9 248 88.3
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 2.0e-69 266.9 248 88.3
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 2.0e-69 266.9 252 87.3
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 4.4e-69 265.8 251 85.3
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 5.7e-69 265.4 251 86.9
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 5.7e-69 265.4 251 86.9
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 1.3e-68 264.2 251 86.9
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 1.3e-68 264.2 251 86.9
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 1.3e-68 264.2 251 86.9
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 1.3e-68 264.2 248 86.3
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 1.3e-68 264.2 251 85.7
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 1.7e-68 263.8 317 74.8
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 2.8e-68 263.1 250 86.4
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 6.3e-68 261.9 251 85.3
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 3.1e-67 259.6 143 83.2
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 1.6e-66 257.3 143 84.6
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 2.6e-66 256.5 244 87.3
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 5.9e-66 255.4 244 86.9
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 1.0e-65 254.6 143 81.8
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 5.0e-65 252.3 307 74.3
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 5.0e-65 252.3 244 86.1
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 2.5e-64 250.0 143 80.4
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 2.5e-64 250.0 143 80.4
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 5.5e-64 248.8 143 80.4
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 5.5e-64 248.8 143 79.7
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 5.5e-64 248.8 146 78.8
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 2.7e-63 246.5 143 77.6
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 2.7e-63 246.5 251 82.5
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.0e-62 244.6 143 80.4
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 1.4e-62 244.2 248 82.3
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 2.3e-62 243.4 143 76.9
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.3e-62 243.4 143 79.7
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 1.3e-60 237.7 143 75.5
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 1.7e-60 237.3 143 75.5
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 1.7e-60 237.3 143 75.5
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 4.8e-60 235.7 143 74.8
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 4.8e-60 235.7 143 74.8
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 6.3e-60 235.3 143 73.4
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 1.6e-58 230.7 143 73.4
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 9.4e-56 221.5 318 68.9
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 4.0e-54 216.1 318 67.0
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 5.7e-53 212.2 316 59.2
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 2.2e-49 200.3 318 61.0
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 3.2e-48 196.4 318 66.4
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 1.0e-46 191.4 332 50.9
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 5.2e-46 189.1 115 71.3
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 6.8e-46 188.7 144 59.7
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 2.0e-45 187.2 143 62.9
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 9.8e-45 184.9 305 68.5
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 2.4e-43 180.3 139 57.6
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 2.5e-40 170.2 208 77.9
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 9.5e-40 168.3 306 64.4
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 2.8e-39 166.8 106 73.6
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 3.6e-31 139.8 110 57.3
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.3e-30 137.1 305 38.7
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 2.0e-29 134.0 114 58.8
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 2.4e-27 127.1 93 65.6
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.0e-21 107.5 314 27.1
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.3e-16 90.1 314 24.5
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.6e-15 86.7 93 46.2
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 1.7e-12 77.8 120 40.8
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 7.1e-11 72.4 111 37.8
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 5.6e-08 62.8 41 61.0
Hma1.2p1_1912F.1_g307330 Hydrangea macrophylla HOM05D019969 ORTHO05D019446 2.8e-07 60.5 77 42.9
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 8.1e-07 58.9 35 65.7


User provided reference genes

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