Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 7.1e-136 487.3 245 100.0
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 4.9e-129 464.5 245 93.5
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 1.7e-105 386.3 247 78.9
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 1.5e-101 373.2 256 72.3
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 1.6e-100 369.8 239 74.9
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 2.1e-100 369.4 254 72.0
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.1e-99 367.1 254 71.7
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 3.1e-99 365.5 258 70.9
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 1.2e-98 363.6 254 72.8
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 2.0e-98 362.8 247 72.9
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 2.0e-98 362.8 248 72.6
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 2.0e-98 362.8 253 71.9
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 1.0e-97 360.5 245 71.8
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 1.0e-97 360.5 252 71.0
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 1.3e-97 360.1 252 72.2
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 3.8e-97 358.6 253 70.0
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 6.5e-97 357.8 257 70.4
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.4e-96 356.7 252 70.6
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 2.5e-96 355.9 245 73.5
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 4.2e-96 355.1 209 79.4
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 4.2e-96 355.1 244 70.5
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 9.3e-96 354.0 251 69.7
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 1.2e-95 353.6 239 72.8
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 3.6e-95 352.1 250 69.6
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 4.6e-95 351.7 216 75.5
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 6.1e-95 351.3 215 76.7
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 6.1e-95 351.3 248 71.8
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 7.9e-95 350.9 245 71.0
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 2.3e-94 349.4 252 67.1
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 3.0e-94 349.0 216 75.0
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 3.9e-94 348.6 212 75.0
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 5.1e-94 348.2 247 69.6
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 6.7e-94 347.8 238 71.0
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 8.7e-94 347.4 254 67.7
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 8.7e-94 347.4 241 70.1
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 8.7e-94 347.4 246 70.7
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 8.7e-94 347.4 249 69.5
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 8.7e-94 347.4 251 67.3
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 1.1e-93 347.1 242 68.6
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 1.9e-93 346.3 240 72.1
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 1.9e-93 346.3 238 70.6
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 1.9e-93 346.3 238 70.6
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 1.9e-93 346.3 253 67.2
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 3.3e-93 345.5 224 72.3
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 5.7e-93 344.7 209 76.6
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 7.4e-93 344.4 253 67.2
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 7.4e-93 344.4 242 68.6
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 9.7e-93 344.0 245 68.2
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.6e-92 343.2 221 72.4
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 1.6e-92 343.2 216 74.1
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 1.6e-92 343.2 216 74.1
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 2.2e-92 342.8 241 68.0
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 2.2e-92 342.8 208 75.5
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 2.8e-92 342.4 245 66.9
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 3.7e-92 342.0 202 76.7
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 4.8e-92 341.7 243 66.7
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 4.8e-92 341.7 243 66.7
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 8.2e-92 340.9 204 77.0
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 1.1e-91 340.5 210 75.7
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 1.1e-91 340.5 256 67.2
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 1.1e-91 340.5 208 75.0
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 1.1e-91 340.5 246 70.7
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.4e-91 340.1 240 69.2
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 2.4e-91 339.3 238 67.6
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 2.4e-91 339.3 238 67.6
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 2.4e-91 339.3 219 73.1
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 4.1e-91 338.6 242 66.5
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 5.3e-91 338.2 243 67.5
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 6.9e-91 337.8 234 68.8
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 9.1e-91 337.4 242 66.5
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 9.1e-91 337.4 242 66.5
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 9.1e-91 337.4 231 68.8
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 1.2e-90 337.0 245 68.6
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 1.5e-90 336.7 238 68.1
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 2.0e-90 336.3 242 66.5
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 2.0e-90 336.3 208 73.1
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 4.5e-90 335.1 253 66.0
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 4.5e-90 335.1 257 65.4
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 1.7e-89 333.2 236 67.8
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 2.9e-89 332.4 236 67.4
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 3.8e-89 332.0 251 66.9
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 5.0e-89 331.6 240 66.7
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.0e-89 331.6 240 66.7
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.0e-89 331.6 240 66.7
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 6.5e-89 331.3 249 67.1
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 6.5e-89 331.3 247 66.0
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 1.1e-88 330.5 256 64.8
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.9e-88 329.7 248 66.9
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 4.2e-88 328.6 254 65.7
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 1.6e-87 326.6 256 64.5
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 2.1e-87 326.2 239 66.5
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 2.1e-87 326.2 213 71.4
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 2.7e-87 325.9 258 63.2
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 2.0e-85 319.7 263 62.7
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 1.3e-84 317.0 194 75.3
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 1.7e-84 316.6 236 66.1
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 3.1e-83 312.4 244 63.9
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 9.1e-83 310.8 252 63.1
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 1.2e-82 310.5 255 59.6
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 1.0e-81 307.4 248 62.5
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.0e-81 307.4 287 55.4
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 8.5e-81 304.3 249 64.3
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.9e-80 303.1 306 52.0
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 3.6e-79 298.9 244 63.9
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 5.7e-77 291.6 172 75.6
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 1.1e-75 287.3 203 65.5
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.2e-73 279.6 173 74.6
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 2.0e-66 256.5 158 76.6
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 2.9e-65 252.7 313 46.6
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 3.2e-64 249.2 220 60.0
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 4.4e-61 238.8 136 80.1
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.2e-60 236.5 278 48.6
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 1.1e-56 224.2 191 56.0
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 2.5e-56 223.0 193 51.3
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 3.2e-56 222.6 183 54.6
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 1.2e-55 220.7 146 69.9
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 3.7e-52 209.1 227 49.8
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 2.4e-51 206.5 154 64.9
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 2.7e-50 203.0 119 79.8
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 2.3e-49 199.9 241 46.1
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 2.5e-48 196.4 169 59.2
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 1.2e-47 194.1 190 46.3
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 3.7e-44 182.6 106 79.2
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 3.5e-42 176.0 100 83.0
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 1.0e-41 174.5 121 66.9
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 5.0e-41 172.2 108 73.1
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 5.6e-40 168.7 100 78.0
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.1e-38 164.5 100 72.0
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.4e-35 154.1 97 74.2
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 3.9e-33 146.0 87 78.2
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 1.1e-32 144.4 152 55.3
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 2.8e-31 139.8 84 72.6
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 1.9e-27 127.1 183 42.6
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 9.2e-27 124.8 101 55.4
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 7.8e-26 121.7 184 35.3
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 4.3e-24 115.9 128 50.8
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 5.6e-24 115.5 69 76.8
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 9.5e-24 114.8 89 62.9
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 9.5e-24 114.8 89 62.9
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 1.6e-23 114.0 72 73.6
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 1.6e-23 114.0 72 73.6
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 2.1e-23 113.6 71 74.6
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 5.8e-21 105.5 97 55.7
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 1.7e-20 104.0 102 53.9
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 1.2e-15 87.8 108 49.1
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 8.1e-15 85.1 173 29.5
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 2.6e-13 80.1 49 73.5
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 3.4e-13 79.7 77 49.4
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 7.6e-13 78.6 57 66.7
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 7.6e-13 78.6 57 66.7
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 9.3e-11 71.6 54 53.7
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 1.3e-09 67.8 42 73.8
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.7e-09 67.4 56 58.9
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 1.7e-09 67.4 97 38.1
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 1.1e-08 64.7 42 69.0
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 1.1e-08 64.7 47 63.8
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 1.5e-08 64.3 35 80.0
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 1.5e-08 64.3 40 70.0
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 2.5e-08 63.5 40 70.0


User provided reference genes

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