Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 1.0e-87 326.6 155 100.0
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 1.5e-83 312.8 155 95.5
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 2.6e-75 285.4 155 85.2
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 4.9e-74 281.2 155 84.5
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 1.7e-71 272.7 156 82.7
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 4.7e-69 264.6 156 80.1
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 1.4e-68 263.1 153 80.4
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 3.1e-68 261.9 154 79.2
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 8.9e-68 260.4 150 78.7
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 3.4e-67 258.5 150 78.7
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 5.8e-67 257.7 156 78.2
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 2.9e-66 255.4 150 78.0
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 2.4e-65 252.3 151 76.2
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 2.4e-65 252.3 150 74.0
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 1.6e-64 249.6 156 75.6
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 2.7e-64 248.8 149 77.9
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 3.5e-64 248.4 151 78.1
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 3.5e-64 248.4 151 76.2
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 1.7e-63 246.1 156 75.0
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 3.9e-63 245.0 151 72.8
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 5.1e-63 244.6 156 73.7
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 3.3e-62 241.9 153 73.2
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 2.8e-61 238.8 153 72.5
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 8.1e-61 237.3 153 71.9
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 4.0e-60 235.0 150 73.3
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 8.9e-60 233.8 151 71.5
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 1.2e-59 233.4 149 71.8
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 1.2e-59 233.4 150 74.7
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 2.6e-59 232.3 154 71.4
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 2.6e-59 232.3 150 68.0
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 1.7e-58 229.6 153 69.9
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 1.1e-57 226.9 153 70.6
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 3.2e-57 225.3 149 69.8
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 5.4e-57 224.6 154 68.2
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 5.4e-57 224.6 154 68.2
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 9.2e-57 223.8 154 67.5
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 1.2e-56 223.4 149 69.1
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 1.2e-56 223.4 149 69.1
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 2.1e-56 222.6 151 66.9
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 2.1e-56 222.6 148 70.3
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 2.7e-56 222.2 149 68.5
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 6.0e-56 221.1 153 65.4
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 1.0e-55 220.3 155 68.4
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 1.0e-55 220.3 151 67.5
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 3.0e-55 218.8 153 66.0
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 3.9e-55 218.4 151 64.9
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 3.9e-55 218.4 148 68.9
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 3.9e-55 218.4 150 70.7
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 5.1e-55 218.0 151 68.2
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 1.9e-54 216.1 156 67.9
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 3.3e-54 215.3 152 67.8
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 3.3e-54 215.3 152 67.8
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 5.6e-54 214.5 151 66.9
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 1.2e-53 213.4 152 67.1
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 1.2e-53 213.4 152 67.1
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 6.2e-53 211.1 151 64.9
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 2.4e-52 209.1 153 65.4
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 2.4e-52 209.1 156 66.7
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 3.1e-52 208.8 148 62.8
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 3.1e-52 208.8 148 62.8
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 1.2e-51 206.8 117 79.5
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 1.5e-51 206.5 153 64.1
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 3.4e-51 205.3 149 63.8
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 4.4e-51 204.9 151 62.9
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 5.8e-51 204.5 155 65.2
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 2.2e-50 202.6 149 62.4
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 1.1e-49 200.3 154 58.4
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 3.2e-49 198.7 152 62.5
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 5.4e-49 198.0 151 60.3
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 2.1e-48 196.1 151 59.6
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.7e-47 193.0 112 78.6
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 4.3e-46 188.3 153 58.8
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 9.6e-46 187.2 149 58.4
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 1.1e-44 183.7 127 68.5
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 5.3e-44 181.4 120 70.0
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 1.2e-43 180.3 150 57.3
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 1.3e-39 166.8 155 53.5
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 2.1e-37 159.5 122 62.3
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 8.7e-31 137.5 100 67.0
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 1.8e-28 129.8 139 43.2
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 2.4e-28 129.4 98 70.4
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 1.2e-19 100.5 150 38.7
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 2.0e-19 99.8 150 36.7
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 1.2e-16 90.5 64 60.9
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 1.3e-15 87.0 54 72.2
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 1.3e-15 87.0 62 59.7
Pp3c24_16730 Physcomitrium patens HOM05D031660 ORTHO05D009870 1.6e-08 63.5 106 34.0


User provided reference genes

Program Settings