Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 8.2e-36 154.1 142 100.0
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 4.7e-31 138.3 146 80.8
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 7.5e-21 104.4 99 80.8
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 6.3e-20 101.3 98 76.5
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 1.4e-19 100.1 98 75.5
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 1.8e-19 99.8 98 78.6
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 7.0e-19 97.8 97 78.4
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 9.1e-19 97.4 98 77.6
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 5.9e-18 94.7 95 74.7
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 5.9e-18 94.7 95 74.7
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 5.9e-18 94.7 95 74.7
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 7.7e-18 94.4 98 75.5
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 1.3e-17 93.6 96 76.0
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 1.7e-17 93.2 92 72.8
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 2.3e-17 92.8 92 76.1
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 2.3e-17 92.8 91 75.8
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 2.3e-17 92.8 92 71.7
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 2.3e-17 92.8 92 71.7
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 2.3e-17 92.8 92 71.7
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 5.0e-17 91.7 92 72.8
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 8.6e-17 90.9 95 72.6
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 1.9e-16 89.7 92 78.3
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 2.5e-16 89.4 88 79.5
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 3.3e-16 89.0 87 78.2
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 3.3e-16 89.0 87 78.2
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 3.3e-16 89.0 92 77.2
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 4.2e-16 88.6 92 68.5
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 4.2e-16 88.6 89 76.4
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 4.2e-16 88.6 91 76.9
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 4.2e-16 88.6 92 73.9
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 5.5e-16 88.2 97 71.1
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 7.2e-16 87.8 89 79.8
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 1.6e-15 86.7 92 77.2
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 2.8e-15 85.9 97 72.2
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 3.6e-15 85.5 87 78.2
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 3.6e-15 85.5 87 78.2
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 3.6e-15 85.5 94 74.5
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 4.7e-15 85.1 95 70.5
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 6.1e-15 84.7 88 73.9
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 6.1e-15 84.7 91 72.5
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 1.4e-14 83.6 87 78.2
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 1.4e-14 83.6 92 75.0
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 1.8e-14 83.2 95 74.7
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 2.3e-14 82.8 88 73.9
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 2.3e-14 82.8 92 73.9
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 3.0e-14 82.4 86 77.9
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 4.0e-14 82.0 92 72.8
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 5.2e-14 81.6 90 77.8
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 8.9e-14 80.9 92 72.8
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 1.2e-13 80.5 85 71.8
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 1.5e-13 80.1 82 81.7
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 2.6e-13 79.3 85 70.6
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 4.4e-13 78.6 87 72.4
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 4.4e-13 78.6 92 71.7
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 5.7e-13 78.2 86 74.4
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 7.5e-13 77.8 95 72.6
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 1.3e-12 77.0 92 71.7
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 1.3e-12 77.0 92 71.7
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 2.2e-12 76.3 92 72.8
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 3.7e-12 75.5 95 71.6
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 6.3e-12 74.7 95 71.6
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 8.3e-12 74.3 95 70.5
HanXRQChr04g0124061 Helianthus annuus HOM05D007781 ORTHO05D009769 1.8e-11 73.2 82 79.3
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 3.1e-11 72.4 79 77.2
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 9.2e-11 70.9 86 72.1
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 9.2e-11 70.9 40 70.0
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 9.2e-11 70.9 40 67.5
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 9.2e-11 70.9 95 70.5
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.2e-10 70.5 86 70.9
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 1.6e-10 70.1 86 70.9
ECA236G0601 Erigeron canadensis HOM05D007781 ORTHO05D009769 2.0e-10 69.7 82 78.0
Aqoxy1G02434 Aquilegia oxysepala HOM05D007781 ORTHO05D009769 4.5e-10 68.6 92 67.4
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 4.5e-10 68.6 82 72.0
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 4.5e-10 68.6 81 72.8
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 7.8e-10 67.8 85 74.1
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 7.8e-10 67.8 40 65.0
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 1.3e-09 67.0 86 70.9
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 1.3e-09 67.0 86 66.3
PSO541G0656 Papaver somniferum HOM05D007781 ORTHO05D009769 1.7e-09 66.6 89 69.7
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 2.9e-09 65.9 40 67.5
SHI01775 Sapria himalayana HOM05D007781 ORTHO05D009769 2.9e-09 65.9 40 72.5
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 3.8e-09 65.5 89 69.7
Ah.14g089440 Amaranthus hybridus HOM05D007781 ORTHO05D009769 5.0e-09 65.1 36 72.2
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 1.5e-08 63.5 38 65.8
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 5.6e-08 61.6 82 68.3
unitig_744.g24534 Utricularia gibba HOM05D007781 ORTHO05D009769 5.6e-08 61.6 80 70.0
Cfa000439 Carpinus fangiana HOM05D007781 ORTHO05D009769 5.2e-06 55.1 97 36.1
Gohir.A11G117400 Gossypium hirsutum HOM05D007781 ORTHO05D009769 5.2e-06 55.1 36 55.6


User provided reference genes

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