Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 9.1e-108 393.7 210 100.0
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 4.9e-85 318.2 210 81.0
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 3.6e-80 302.0 210 76.2
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 1.7e-77 293.1 210 74.8
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 1.1e-76 290.4 208 74.0
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 4.6e-75 285.0 212 73.1
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 1.0e-74 283.9 211 74.9
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 3.3e-73 278.9 212 72.6
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 3.3e-73 278.9 212 71.2
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 5.6e-73 278.1 208 72.1
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 7.3e-73 277.7 212 70.8
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 1.2e-72 276.9 213 72.3
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 2.1e-72 276.2 220 69.5
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 5.2e-71 271.6 212 71.7
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 6.8e-71 271.2 213 71.8
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 6.8e-71 271.2 210 75.7
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 2.0e-70 269.6 205 69.8
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 4.4e-70 268.5 211 68.7
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 1.7e-69 266.5 211 70.1
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 1.6e-67 260.0 212 68.9
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 6.0e-67 258.1 210 69.5
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 7.8e-67 257.7 211 67.8
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 3.9e-66 255.4 211 67.3
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 5.1e-66 255.0 213 68.5
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 5.1e-66 255.0 209 66.0
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 6.6e-66 254.6 212 67.0
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 1.5e-65 253.4 213 68.1
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 1.5e-65 253.4 210 66.2
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 1.9e-65 253.1 208 65.4
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 2.5e-65 252.7 217 65.4
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 2.5e-65 252.7 221 63.8
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 3.3e-65 252.3 215 67.4
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 5.6e-65 251.5 215 66.0
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 9.6e-65 250.8 215 67.4
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 2.8e-64 249.2 197 67.5
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 3.6e-64 248.8 206 67.0
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 4.7e-64 248.4 169 75.7
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 4.7e-64 248.4 210 65.7
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 8.1e-64 247.7 210 65.7
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 1.1e-63 247.3 224 63.8
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 1.1e-63 247.3 211 65.9
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 3.1e-63 245.7 208 63.9
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 4.0e-63 245.4 210 65.7
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 4.0e-63 245.4 215 65.1
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 5.2e-63 245.0 213 66.7
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 6.8e-63 244.6 211 65.9
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 4.4e-62 241.9 209 63.2
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 4.4e-62 241.9 213 64.8
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 5.8e-62 241.5 176 70.5
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 2.2e-61 239.6 212 64.6
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 4.9e-61 238.4 213 64.3
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 1.4e-60 236.9 211 64.5
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 1.9e-60 236.5 169 72.2
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 4.2e-60 235.3 226 60.2
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 4.2e-60 235.3 216 63.0
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 1.2e-59 233.8 213 61.0
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 3.5e-59 232.3 211 64.0
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 6.0e-59 231.5 210 67.1
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 7.8e-59 231.1 214 61.7
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 1.3e-58 230.3 211 62.6
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 2.3e-58 229.6 213 64.3
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 3.0e-58 229.2 215 61.4
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 3.9e-58 228.8 213 61.0
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 6.6e-58 228.0 209 61.2
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 1.5e-57 226.9 213 61.5
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 2.5e-57 226.1 200 61.0
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 3.3e-57 225.7 174 70.7
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 7.3e-57 224.6 213 62.9
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 3.6e-56 222.2 184 64.1
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 8.1e-56 221.1 210 59.0
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 1.4e-55 220.3 184 64.1
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 4.4e-54 215.3 200 59.5
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 1.3e-53 213.8 255 53.7
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 2.9e-53 212.6 145 75.9
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 1.6e-51 206.8 210 56.2
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 2.7e-51 206.1 170 67.1
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 1.3e-50 203.8 156 69.9
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 5.1e-50 201.8 206 57.8
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 1.9e-49 199.9 146 71.9
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 1.9e-49 199.9 211 54.5
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 1.6e-48 196.8 202 56.9
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 4.8e-48 195.3 155 69.7
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 4.8e-48 195.3 210 55.2
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 3.1e-47 192.6 156 64.1
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 4.0e-47 192.2 216 54.6
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 4.0e-47 192.2 146 66.4
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 3.4e-46 189.1 144 66.7
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 7.6e-46 188.0 161 65.2
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 9.9e-46 187.6 170 57.1
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 1.3e-45 187.2 216 55.6
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 4.9e-45 185.3 150 67.3
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 4.2e-44 182.2 206 50.0
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 7.1e-44 181.4 184 53.3
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 9.3e-44 181.0 217 53.5
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 1.2e-43 180.6 150 66.7
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 2.3e-42 176.4 154 61.7
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 1.1e-41 174.1 213 53.1
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 4.3e-41 172.2 207 43.5
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 1.6e-40 170.2 175 57.7
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 3.7e-40 169.1 216 54.2
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 7.6e-38 161.4 156 59.0
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 3.2e-36 156.0 210 49.5
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 2.7e-35 152.9 214 50.9
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 9.0e-31 137.9 169 51.5
Mapoly0103s0052 Marchantia polymorpha HOM05D006133 ORTHO05D007855 5.8e-30 135.2 208 39.4
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 1.9e-28 130.2 211 44.5
Lalb_Chr05g0218461 Lupinus albus HOM05D006133 ORTHO05D007855 2.1e-27 126.7 208 44.7
Cpa.g.sc39.10 Carica papaya HOM05D006133 ORTHO05D007855 3.0e-26 122.9 131 56.5
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 4.1e-23 112.5 101 61.4
Os07g0256300 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 5.9e-22 108.6 176 37.5
Zm00001eb304600 Zea mays HOM05D006133 ORTHO05D007855 1.0e-21 107.8 153 37.9
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 3.6e-19 99.4 206 38.8
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 6.7e-18 95.1 88 61.4
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 8.8e-18 94.7 100 59.0
Gohir.A11G286823 Gossypium hirsutum HOM05D006133 ORTHO05D007855 6.9e-15 85.1 73 67.1
A05p11770 Brassica napus HOM05D006133 ORTHO05D007855 1.2e-14 84.3 95 52.6
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 2.9e-13 79.7 68 64.7
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 5.0e-13 79.0 160 37.5
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.4e-12 77.4 160 37.5
Eucgr.B00904 Eucalyptus grandis HOM05D006133 ORTHO05D007855 6.1e-11 72.0 144 37.5
Os07g0208801 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 7.9e-11 71.6 65 52.3
BraA05t20121Z Brassica rapa HOM05D006133 ORTHO05D007855 8.8e-10 68.2 79 54.4
HPP92_006839 Vanilla planifolia HOM05D006133 ORTHO05D007855 5.7e-09 65.5 55 63.6
Eucgr.B00952 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.3e-08 64.3 98 41.8
C04p15300 Brassica napus HOM05D006133 ORTHO05D007855 4.1e-07 59.3 42 76.2
Zm00001eb131680 Zea mays HOM05D006133 ORTHO05D446205 4.1e-07 59.3 63 47.6
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 4.1e-07 59.3 63 47.6


User provided reference genes

Program Settings