Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G033300 Populus trichocarpa HOM05D007836 ORTHO05D009876 5.8e-40 167.2 88 100.0
Sabra04G0019100 Salix brachista HOM05D007836 ORTHO05D009876 1.5e-35 152.5 88 90.9
Potri.011G041700 Populus trichocarpa HOM05D007836 ORTHO05D009876 3.9e-28 127.9 84 83.3
COL.COLO4_31599 Corchorus olitorius HOM05D007836 ORTHO05D009876 1.6e-26 122.5 88 73.9
Sabra11G0028600 Salix brachista HOM05D007836 ORTHO05D009876 1.1e-25 119.8 76 85.5
Ciclev10017323m.g Citrus clementina HOM05D007836 ORTHO05D009876 2.2e-23 112.1 90 68.9
QL05p081073 Quercus lobata HOM05D007836 ORTHO05D009876 3.8e-23 111.3 82 75.6
Haze_06588 Corylus avellana HOM05D007836 ORTHO05D009876 1.1e-22 109.8 88 70.5
Thecc.06G201100 Theobroma cacao HOM05D007836 ORTHO05D009876 1.1e-22 109.8 92 65.2
Cfa000343 Carpinus fangiana HOM05D007836 ORTHO05D009876 1.9e-22 109.0 88 70.5
CiPaw.10G117600 Carya illinoinensis HOM05D007836 ORTHO05D009876 2.5e-22 108.6 89 69.7
Hma1.2p1_1182F.1_g264760 Hydrangea macrophylla HOM05D007836 ORTHO05D009876 4.6e-21 104.4 84 66.7
Manes.16G019800 Manihot esculenta HOM05D007836 ORTHO05D009876 6.1e-21 104.0 89 67.4
TPR.G36842 Trifolium pratense HOM05D007836 ORTHO05D009876 5.1e-20 100.9 90 64.4
Ca_00250_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 1.5e-19 99.4 90 66.7
Ca_29769_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 1.5e-19 99.4 90 66.7
Ca_29839_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 1.5e-19 99.4 90 66.7
Psat1g208960 Pisum sativum HOM05D007836 ORTHO05D009876 4.3e-19 97.8 92 62.0
TWI38G1692 Tripterygium wilfordii HOM05D007836 ORTHO05D009876 5.7e-19 97.4 88 67.0
Medtr2g011690 Medicago truncatula HOM05D007836 ORTHO05D009876 9.7e-19 96.7 92 62.0
Gohir.A10G021700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 4.8e-18 94.4 91 62.6
Gorai.011G023600 Gossypium raimondii HOM05D007836 ORTHO05D009876 8.2e-18 93.6 93 61.3
Nn1g03860 Nelumbo nucifera HOM05D007836 ORTHO05D009876 2.4e-17 92.0 88 62.5
Nn1g03862 Nelumbo nucifera HOM05D007836 ORTHO05D009876 2.4e-17 92.0 88 62.5
TAR629G2038 Trochodendron aralioides HOM05D007836 ORTHO05D009876 4.1e-17 91.3 91 59.3
Prupe.4G035300 Prunus persica HOM05D007836 ORTHO05D009876 5.3e-17 90.9 88 59.1
FAN11G3258 Fragaria x ananassa HOM05D007836 ORTHO05D009876 9.0e-17 90.1 100 62.0
Nitab4.5_0000649g0060 Nicotiana tabacum HOM05D007836 ORTHO05D009876 9.0e-17 90.1 86 59.3
Migut.M01222 Erythranthe guttata HOM05D007836 ORTHO05D009876 2.6e-16 88.6 83 62.7
Rhsim02G0119100 Rhododendron simsii HOM05D007836 ORTHO05D009876 3.4e-16 88.2 90 62.2
MBI18_g27690_MAGBIO Magnolia biondii HOM05D007836 ORTHO05D009876 5.9e-16 87.4 92 57.6
Gohir.D10G022500 Gossypium hirsutum HOM05D007836 ORTHO05D009876 1.0e-15 86.7 98 56.1
QL05p081076 Quercus lobata HOM05D007836 ORTHO05D009876 8.5e-15 83.6 72 70.8
Glyma.13G247000 Glycine max HOM05D007836 ORTHO05D009876 5.5e-14 80.9 90 57.8
FvH4_3g03810 Fragaria vesca HOM05D007836 ORTHO05D009876 9.4e-14 80.1 101 56.4
Potri.019G117800 Populus trichocarpa HOM05D007836 ORTHO05D009876 1.2e-13 79.7 93 53.8
TAR627G0603 Trochodendron aralioides HOM05D007836 ORTHO05D009876 1.2e-13 79.7 84 58.3
Atru.chr10.2022 Acer truncatum HOM05D007836 ORTHO05D009876 1.6e-13 79.3 75 60.0
FAN16G2096 Fragaria x ananassa HOM05D007836 ORTHO05D009876 1.6e-13 79.3 101 56.4
PGR004G0674 Punica granatum HOM05D007836 ORTHO05D009876 3.6e-13 78.2 84 54.8
QL08p037020 Quercus lobata HOM05D007836 ORTHO05D009876 6.1e-13 77.4 92 54.3
Eucgr.L02510 Eucalyptus grandis HOM05D007836 ORTHO05D009876 1.0e-12 76.6 87 55.2
Nitab4.5_0005389g0040 Nicotiana tabacum HOM05D007836 ORTHO05D009876 1.4e-12 76.3 79 53.2
Eucgr.L02509 Eucalyptus grandis HOM05D007836 ORTHO05D009876 1.8e-12 75.9 87 55.2
Sabra19G0118200 Salix brachista HOM05D007836 ORTHO05D009876 6.7e-12 73.9 93 49.5
FAN21G2853 Fragaria x ananassa HOM05D007836 ORTHO05D009876 8.8e-12 73.6 73 63.0
Atru.chr6.3083 Acer truncatum HOM05D007836 ORTHO05D009876 1.5e-11 72.8 102 48.0
Cfa014529 Carpinus fangiana HOM05D007836 ORTHO05D009876 2.0e-11 72.4 98 49.0
Migut.H01523 Erythranthe guttata HOM05D007836 ORTHO05D009876 2.5e-11 72.0 93 50.5
Aqoxy1G03904 Aquilegia oxysepala HOM05D007836 ORTHO05D009876 3.3e-11 71.6 91 46.2
Lalb_Chr20g0122321 Lupinus albus HOM05D007836 ORTHO05D009876 4.3e-11 71.2 88 51.1
Ciclev10018116m.g Citrus clementina HOM05D007836 ORTHO05D009876 1.7e-10 69.3 74 58.1
Solyc02g079240.1 Solanum lycopersicum HOM05D007836 ORTHO05D009876 1.7e-10 69.3 79 54.4
CiPaw.03G168400 Carya illinoinensis HOM05D007836 ORTHO05D009876 2.8e-10 68.6 97 47.4
Manes.13G152300 Manihot esculenta HOM05D007836 ORTHO05D009876 3.7e-10 68.2 90 46.7
Gohir.D06G127700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 8.2e-10 67.0 68 55.9
Gorai.010G149400 Gossypium raimondii HOM05D007836 ORTHO05D009876 8.2e-10 67.0 68 55.9
Sopen02g024060 Solanum pennellii HOM05D007836 ORTHO05D009876 1.1e-09 66.6 88 47.7
CAN.G424.25 Capsicum annuum HOM05D007836 ORTHO05D009876 2.4e-09 65.5 84 48.8
Prupe.3G229500 Prunus persica HOM05D000831 ORTHO05D000660 2.4e-09 65.5 91 45.1
Prupe.3G229000 Prunus persica HOM05D000831 ORTHO05D000660 9.1e-09 63.5 91 42.9
FAN25G1236 Fragaria x ananassa HOM05D007380 ORTHO05D009269 1.2e-08 63.2 90 54.4
COL.COLO4_13657 Corchorus olitorius HOM05D007836 ORTHO05D009876 1.5e-08 62.8 91 45.1
Prupe.3G229400 Prunus persica HOM05D000831 ORTHO05D000660 1.5e-08 62.8 91 41.8
Thecc.02G170500 Theobroma cacao HOM05D007836 ORTHO05D009876 7.7e-08 60.5 92 44.6
ClCG01G022480 Citrullus lanatus HOM05D007836 ORTHO05D009876 1.0e-07 60.1 82 45.1
Phvul.006G192700 Phaseolus vulgaris HOM05D007836 ORTHO05D009876 1.0e-07 60.1 74 54.1
Prupe.3G229800 Prunus persica HOM05D000831 ORTHO05D000660 1.0e-07 60.1 91 42.9
Potri.013G148300 Populus trichocarpa HOM05D007836 ORTHO05D009876 1.3e-07 59.7 92 44.6
CARHR256510 Cardamine hirsuta HOM05D000831 ORTHO05D000660 1.7e-07 59.3 81 45.7
RcHm_v2.0_Chr2g0161481 Rosa chinensis HOM05D000831 ORTHO05D000660 1.7e-07 59.3 84 44.0
SHI24864 Sapria himalayana HOM05D007836 ORTHO05D009876 1.7e-07 59.3 74 51.4
Actinidia11813 Actinidia chinensis HOM05D007380 ORTHO05D009269 3.8e-07 58.2 61 55.7
Cfa014533 Carpinus fangiana HOM05D000831 ORTHO05D000660 3.8e-07 58.2 85 43.5
Cfa014535 Carpinus fangiana HOM05D000831 ORTHO05D000660 3.8e-07 58.2 85 43.5
Cfa014536 Carpinus fangiana HOM05D000831 ORTHO05D000660 3.8e-07 58.2 85 43.5
Ah.06g183460 Amaranthus hybridus HOM05D000831 ORTHO05D000660 5.0e-07 57.8 73 47.9
AL6G44110 Arabidopsis lyrata HOM05D000831 ORTHO05D000660 5.0e-07 57.8 79 44.3
Cfa014532 Carpinus fangiana HOM05D000831 ORTHO05D000660 5.0e-07 57.8 85 43.5
Thhalv10009208m.g Eutrema salsugineum HOM05D000831 ORTHO05D000660 5.0e-07 57.8 83 45.8
Gohir.A06G209201 Gossypium hirsutum HOM05D007836 ORTHO05D009876 6.5e-07 57.4 71 54.9
CARHR256440 Cardamine hirsuta HOM05D000831 ORTHO05D000660 8.5e-07 57.0 81 48.1
Sp6g07170 Schrenkiella parvula HOM05D000831 ORTHO05D000660 8.5e-07 57.0 79 46.8
Aa31LG9G11730 Aethionema arabicum HOM05D000831 ORTHO05D000660 1.1e-06 56.6 79 45.6
Ah.06g183450 Amaranthus hybridus HOM05D000831 ORTHO05D000660 1.1e-06 56.6 73 46.6
CARHR032800 Cardamine hirsuta HOM05D000831 ORTHO05D000660 1.1e-06 56.6 84 44.0
MD09G1097000 Malus domestica HOM05D000831 ORTHO05D000660 1.1e-06 56.6 84 41.7
RcHm_v2.0_Chr2g0161461 Rosa chinensis HOM05D000831 ORTHO05D000660 1.1e-06 56.6 84 42.9
Sed0016301 Sechium edule HOM05D007836 ORTHO05D009876 1.1e-06 56.6 68 55.9
MD09G1096800 Malus domestica HOM05D000831 ORTHO05D000660 1.4e-06 56.2 89 41.6
CiPaw.03G168600 Carya illinoinensis HOM05D000831 ORTHO05D000660 1.9e-06 55.8 84 42.9
Eucgr.E03690 Eucalyptus grandis HOM05D038013 ORTHO05D009876 1.9e-06 55.8 76 52.6
Sed0003998 Sechium edule HOM05D007836 ORTHO05D009876 1.9e-06 55.8 82 45.1
Cpa.g.sc12.26 Carica papaya HOM05D000831 ORTHO05D000660 2.5e-06 55.5 86 41.9
Glyma.13G301700 Glycine max HOM05D000831 ORTHO05D000660 2.5e-06 55.5 78 44.9
Aa31LG9G9390 Aethionema arabicum HOM05D010797 ORTHO05D012946 3.2e-06 55.1 76 43.4
BcaB01g00888 Brassica carinata HOM05D000831 ORTHO05D000660 3.2e-06 55.1 79 44.3
CiPaw.03G168900 Carya illinoinensis HOM05D000831 ORTHO05D000660 3.2e-06 55.1 88 45.5
CiPaw.03G169000 Carya illinoinensis HOM05D000831 ORTHO05D000660 3.2e-06 55.1 88 45.5
Eucgr.E03810 Eucalyptus grandis HOM05D038013 ORTHO05D009876 3.2e-06 55.1 76 47.4
GSVIVG01030001001 Vitis vinifera HOM05D000831 ORTHO05D000660 3.2e-06 55.1 82 45.1
BcaC01g01784 Brassica carinata HOM05D000831 ORTHO05D000660 4.2e-06 54.7 79 46.8
BcaC01g06655 Brassica carinata HOM05D010797 ORTHO05D012946 4.2e-06 54.7 51 56.9
C03p36540 Brassica napus HOM05D010797 ORTHO05D012946 4.2e-06 54.7 47 59.6
C03p71900 Brassica napus HOM05D000831 ORTHO05D000660 4.2e-06 54.7 79 46.8
BolC3t15967H Brassica oleracea HOM05D010797 ORTHO05D012946 4.2e-06 54.7 51 56.9
BraA03t12212Z Brassica rapa HOM05D010797 ORTHO05D012946 4.2e-06 54.7 51 56.9
CiPaw.03G169100 Carya illinoinensis HOM05D000831 ORTHO05D000660 4.2e-06 54.7 88 45.5
CiPaw.03G169200 Carya illinoinensis HOM05D000831 ORTHO05D000660 4.2e-06 54.7 89 44.9
CsaV3_6G049650 Cucumis sativus L. HOM05D007836 ORTHO05D009876 4.2e-06 54.7 84 41.7
MBI02_g37328_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 4.2e-06 54.7 80 47.5
MBI02_g37332_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 4.2e-06 54.7 78 48.7
Prupe.3G229700 Prunus persica HOM05D000831 ORTHO05D000660 4.2e-06 54.7 71 45.1
QL08p037077 Quercus lobata HOM05D000831 ORTHO05D000660 4.2e-06 54.7 82 41.5
RcHm_v2.0_Chr2g0161441 Rosa chinensis HOM05D000831 ORTHO05D000660 4.2e-06 54.7 86 39.5
ATR0693G322 Amborella trichopoda HOM05D017888 ORTHO05D009876 5.5e-06 54.3 74 47.3
BcaB01g00890 Brassica carinata HOM05D000831 ORTHO05D000660 5.5e-06 54.3 79 44.3
Glyma.13G301800 Glycine max HOM05D000831 ORTHO05D000660 5.5e-06 54.3 78 44.9
RcHm_v2.0_Chr2g0161491 Rosa chinensis HOM05D000831 ORTHO05D000660 5.5e-06 54.3 86 40.7
MBI02_g37334_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 7.2e-06 53.9 88 46.6
MBI02_g44823_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 7.2e-06 53.9 88 46.6
Phvul.005G108100 Phaseolus vulgaris HOM05D000831 ORTHO05D000660 7.2e-06 53.9 77 45.5
Psat5g268680 Pisum sativum HOM05D000831 ORTHO05D000660 7.2e-06 53.9 81 45.7
AT4G10270 Arabidopsis thaliana HOM05D000831 ORTHO05D000660 9.4e-06 53.5 80 45.0
COL.COLO4_13653 Corchorus olitorius HOM05D000831 ORTHO05D000660 9.4e-06 53.5 78 42.3
MELO3C007328.2 Cucumis melo HOM05D007836 ORTHO05D009876 9.4e-06 53.5 83 42.2
FvH4_6g44470 Fragaria vesca HOM05D000831 ORTHO05D000660 9.4e-06 53.5 86 39.5
MBI02_g37331_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 9.4e-06 53.5 80 47.5
MD09G1097100 Malus domestica HOM05D000831 ORTHO05D000660 9.4e-06 53.5 86 37.2
Medtr2g089930 Medicago truncatula HOM05D000831 ORTHO05D000660 9.4e-06 53.5 84 47.6
Sp6g07160 Schrenkiella parvula HOM05D000831 ORTHO05D000660 9.4e-06 53.5 79 45.6


User provided reference genes

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