Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 9.6e-175 616.7 305 100.0
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 2.6e-164 582.0 305 94.4
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 3.0e-160 568.5 305 92.5
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 2.5e-159 565.5 372 78.8
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 1.3e-155 553.1 305 88.5
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 5.0e-155 551.2 305 88.2
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 2.5e-154 548.9 305 87.5
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 2.7e-153 545.4 302 89.1
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 4.6e-153 544.7 305 85.9
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 1.0e-152 543.5 305 86.9
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 3.9e-152 541.6 305 85.9
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 3.9e-152 541.6 305 86.6
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 1.5e-151 539.7 305 87.2
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 4.3e-151 538.1 305 85.9
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 1.3e-150 536.6 305 85.6
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 2.2e-150 535.8 305 86.2
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 2.8e-150 535.4 305 85.6
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 2.8e-150 535.4 305 86.9
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 3.7e-150 535.0 305 85.2
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.4e-149 533.1 305 85.9
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 85.2
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 1.8e-149 532.7 305 85.6
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 2.4e-149 532.3 304 85.2
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 3.1e-149 531.9 305 83.6
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 3.1e-149 531.9 305 85.9
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 3.1e-149 531.9 305 84.6
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 5.3e-149 531.2 305 85.6
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 5.3e-149 531.2 305 83.3
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 6.9e-149 530.8 305 84.9
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 9.1e-149 530.4 305 83.9
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 85.6
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 1.2e-148 530.0 305 84.9
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 84.9
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.5e-148 529.6 305 84.6
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 2.6e-148 528.9 305 84.6
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 2.6e-148 528.9 307 84.4
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.6e-148 528.9 305 84.3
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 5.9e-148 527.7 305 84.3
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 5.9e-148 527.7 305 84.6
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 7.7e-148 527.3 305 85.6
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 7.7e-148 527.3 302 85.4
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.7e-147 526.2 305 84.9
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 2.2e-147 525.8 305 83.0
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 84.6
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 83.9
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 2.9e-147 525.4 305 83.6
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 3.8e-147 525.0 305 84.3
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 3.8e-147 525.0 305 82.6
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 5.0e-147 524.6 305 84.3
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 5.0e-147 524.6 305 83.6
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 6.5e-147 524.2 305 83.6
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 8.5e-147 523.9 305 84.3
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 83.9
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 83.3
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.4e-146 523.1 305 83.3
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 81.3
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 1.9e-146 522.7 305 83.9
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.2e-146 521.5 305 82.6
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 4.2e-146 521.5 305 83.0
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 1.2e-145 520.0 305 82.6
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.6e-145 519.6 305 82.0
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 3.6e-145 518.5 305 82.6
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 4.7e-145 518.1 305 82.3
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 1.8e-144 516.2 302 83.1
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 83.0
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 82.6
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.3e-144 515.8 305 81.6
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 3.0e-144 515.4 308 82.8
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.1e-143 513.5 305 82.0
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.0e-143 512.7 305 81.3
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 2.6e-143 512.3 305 81.3
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 2.6e-143 512.3 300 82.7
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 3.3e-143 511.9 305 81.0
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 7.4e-143 510.8 305 81.6
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 7.4e-143 510.8 305 80.7
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 1.3e-142 510.0 305 80.7
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 2.2e-142 509.2 330 77.0
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 3.7e-142 508.4 303 81.8
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 4.8e-142 508.1 326 77.6
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 3.1e-141 505.4 303 81.2
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 3.1e-141 505.4 302 83.1
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 4.1e-141 505.0 303 80.9
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 4.1e-141 505.0 303 80.9
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 7.0e-141 504.2 305 81.3
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.6e-140 502.3 307 80.8
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 2.9e-139 498.8 305 78.4
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 5.0e-139 498.0 305 79.3
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 5.0e-139 498.0 307 79.8
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 6.5e-139 497.7 305 81.0
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 1.5e-138 496.5 305 78.0
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 1.5e-138 496.5 307 79.8
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 4.2e-138 495.0 307 79.8
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 5.5e-138 494.6 304 78.0
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 1.6e-137 493.0 306 79.4
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 1.6e-137 493.0 306 79.4
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 1.6e-137 493.0 306 79.4
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 8.0e-137 490.7 305 78.7
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 2.3e-136 489.2 306 79.1
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 8.8e-136 487.3 305 78.7
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 1.5e-135 486.5 307 78.2
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 5.7e-135 484.6 304 78.6
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 9.7e-135 483.8 305 76.1
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.1e-133 480.3 305 76.4
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 9.1e-133 477.2 304 76.6
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 5.0e-131 471.5 388 63.4
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 3.2e-130 468.8 304 74.7
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 5.5e-130 468.0 304 74.3
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 5.5e-130 468.0 304 74.3
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 8.0e-129 464.2 305 75.4
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.4e-128 463.4 304 73.7
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 2.3e-120 436.0 304 70.1
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 1.2e-119 433.7 306 69.0
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 2.0e-119 433.0 300 71.0
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 5.4e-117 424.9 304 67.8
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 4.0e-112 408.7 235 85.5
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 6.8e-112 407.9 305 69.2
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 7.5e-111 404.4 261 77.8
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 2.4e-109 399.4 303 64.4
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 8.0e-105 384.4 303 62.7
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 4.6e-100 368.6 311 60.1
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.3e-99 367.1 225 79.6
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 1.9e-98 363.2 225 80.4
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 8.1e-89 331.3 226 74.3
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 8.1e-89 331.3 210 75.7
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 1.1e-69 267.7 143 90.2
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 1.4e-69 267.3 190 73.2
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 1.8e-67 260.4 149 83.2
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 2.1e-65 253.4 181 70.7
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 1.5e-58 230.7 154 75.3
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 1.2e-55 221.1 153 69.9
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 1.7e-54 217.2 302 48.3
vmacro15853 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 8.2e-41 171.8 80 97.5
ATR1132G008 Amborella trichopoda HOM05D005121 ORTHO05D006115 4.5e-39 166.0 85 89.4
Peaxi162Scf00047g00079 Petunia axillaris HOM05D005121 ORTHO05D006115 4.5e-39 166.0 83 89.2
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 5.9e-39 165.6 137 57.7
Ah.09g236480 Amaranthus hybridus HOM05D005121 ORTHO05D006115 6.5e-38 162.2 79 92.4
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 6.5e-38 162.2 125 67.2
BolC1t03821H Brassica oleracea HOM05D005121 ORTHO05D006115 1.1e-37 161.4 80 90.0
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 6.1e-36 155.6 305 36.1
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 7.9e-36 155.2 300 35.7
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.0e-35 154.8 203 48.3
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 8.5e-30 135.2 111 65.8
Hma1.2p1_0155F.1_g068340 Hydrangea macrophylla HOM05D005121 ORTHO05D006115 4.4e-26 122.9 82 69.5
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 3.7e-25 119.8 58 93.1
SGA_v2.0_scaffold7G03907 Striga asiatica HOM05D005121 ORTHO05D006115 3.8e-22 109.8 64 79.7
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 3.3e-18 96.7 60 76.7
PRCOL_00001084 Prasinoderma coloniale HOM05D005121 ORTHO05D006115 1.1e-16 91.7 296 29.4
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 1.2e-15 88.2 74 67.6
Cfa022197 Carpinus fangiana HOM05D005121 ORTHO05D006115 1.6e-15 87.8 239 28.5


User provided reference genes

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