Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 6.5e-224 780.4 396 100.0
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 4.7e-206 721.1 396 92.4
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 2.1e-166 589.3 398 77.1
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 3.6e-166 588.6 396 76.8
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.8e-165 586.3 404 76.7
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 2.2e-163 579.3 412 74.8
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 2.9e-163 578.9 381 79.0
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 2.4e-162 575.9 426 71.1
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 2.1e-161 572.8 411 74.0
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 2.7e-161 572.4 396 74.7
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 6.0e-161 571.2 426 70.2
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 3.9e-160 568.5 365 78.9
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 6.7e-160 567.8 385 75.1
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 8.7e-160 567.4 396 75.3
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.5e-159 565.8 382 77.5
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 3.3e-159 565.5 382 77.5
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 5.6e-159 564.7 384 76.8
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 1.6e-158 563.1 388 75.3
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.6e-158 563.1 407 72.0
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.8e-157 559.7 387 75.7
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.8e-157 559.7 407 72.0
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 6.9e-157 557.8 405 73.1
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 1.2e-156 557.0 367 76.8
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 2.0e-156 556.2 392 74.0
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 3.4e-156 555.4 404 71.0
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 5.8e-156 554.7 413 70.7
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.3e-155 553.5 410 71.7
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 1.3e-155 553.5 399 73.4
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.7e-155 553.1 439 67.9
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 2.2e-155 552.7 405 71.9
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 4.9e-155 551.6 363 76.9
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 8.4e-155 550.8 405 71.9
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 5.5e-154 548.1 402 72.1
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 2.3e-152 542.7 417 71.5
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 3.3e-151 538.9 382 75.1
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 2.8e-150 535.8 389 71.7
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 2.8e-150 535.8 430 67.9
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 6.2e-150 534.6 378 74.6
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.5e-148 530.0 412 69.7
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 1.0e-147 527.3 399 70.9
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.9e-147 525.8 399 68.9
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 6.5e-147 524.6 378 71.4
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 1.9e-146 523.1 411 68.9
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 4.2e-146 521.9 391 68.8
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 5.5e-146 521.5 402 68.9
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 2.1e-145 519.6 287 86.8
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.3e-144 516.9 402 68.4
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 1.1e-143 513.8 368 70.7
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 2.5e-143 512.7 420 66.0
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.3e-142 510.4 380 68.7
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 2.2e-142 509.6 382 69.4
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 8.2e-142 507.7 287 84.7
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 8.2e-142 507.7 371 70.9
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 8.2e-142 507.7 359 71.9
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 8.2e-142 507.7 401 67.8
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 1.4e-141 506.9 402 67.4
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 2.4e-141 506.1 407 65.4
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 3.1e-141 505.8 382 68.8
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 5.3e-141 505.0 373 70.5
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 5.3e-141 505.0 401 67.6
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 6.9e-141 504.6 379 69.1
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 9.0e-141 504.2 360 71.9
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.5e-140 503.4 376 70.7
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.5e-140 503.4 376 70.7
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 1.5e-140 503.4 360 71.9
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 3.4e-140 502.3 287 84.3
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 3.4e-140 502.3 384 68.2
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.3e-139 500.4 399 66.7
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 2.2e-139 499.6 388 67.8
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 1.8e-136 490.0 365 69.9
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.1e-135 487.3 377 67.6
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 2.5e-135 486.1 386 66.1
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 2.2e-134 483.0 403 66.3
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.8e-134 482.6 382 64.9
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 6.3e-134 481.5 373 66.0
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 8.2e-134 481.1 422 62.8
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.8e-133 479.9 410 62.9
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 6.9e-133 478.0 383 64.5
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 9.1e-133 477.6 351 68.7
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 2.0e-132 476.5 367 66.5
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.6e-132 476.1 390 63.8
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 3.4e-132 475.7 410 62.0
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 3.4e-132 475.7 418 63.6
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 4.5e-132 475.3 394 66.2
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 6.5e-131 471.5 415 62.2
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.4e-130 470.3 380 66.6
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 5.5e-130 468.4 388 63.4
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 2.1e-129 466.5 403 63.3
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 3.6e-129 465.7 385 62.1
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.4e-128 463.8 404 61.4
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 5.1e-128 461.8 389 63.8
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.1e-127 460.7 396 62.1
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.0e-127 459.9 397 62.7
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 4.8e-126 455.3 396 63.6
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.8e-125 453.4 399 61.9
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 1.2e-124 450.7 391 62.1
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.5e-124 450.3 395 61.0
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.0e-124 449.9 394 62.2
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 3.5e-124 449.1 393 61.6
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 5.9e-124 448.4 394 61.9
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.3e-123 447.2 340 68.8
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 3.8e-123 445.7 392 62.5
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 5.0e-123 445.3 392 62.5
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.4e-122 443.7 385 62.9
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 4.2e-122 442.2 392 61.7
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 5.5e-122 441.8 393 62.1
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 7.2e-122 441.4 392 62.2
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 3.6e-121 439.1 287 76.0
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 1.0e-120 437.6 368 62.2
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.0e-119 433.3 499 49.7
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 3.3e-119 432.6 389 61.2
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 4.8e-118 428.7 380 61.6
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 4.1e-117 425.6 361 62.6
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.6e-116 423.7 391 60.9
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 4.5e-116 422.2 395 61.5
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.0e-115 421.0 390 59.7
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 1.0e-115 421.0 365 58.6
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.1e-114 417.5 381 60.4
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 3.2e-114 416.0 290 65.2
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 7.2e-114 414.8 287 74.6
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 2.1e-113 413.3 360 59.2
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 3.0e-112 409.5 384 59.6
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 8.8e-112 407.9 381 59.8
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.5e-111 407.1 381 59.6
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 7.5e-111 404.8 381 59.3
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 7.5e-111 404.8 378 59.3
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 2.2e-110 403.3 362 60.5
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 4.8e-110 402.1 382 59.7
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 4.8e-110 402.1 382 59.7
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 7.0e-109 398.3 380 58.2
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 9.1e-109 397.9 382 59.2
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 9.1e-109 397.9 382 58.9
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 9.1e-109 397.9 382 58.9
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 2.7e-108 396.4 359 61.8
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.2e-107 393.3 326 65.0
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 1.3e-99 367.5 344 56.1
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 5.7e-95 352.1 402 49.8
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.5e-90 337.4 251 68.5
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 7.0e-85 318.5 187 80.7
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 2.4e-61 240.4 290 43.8
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 2.8e-57 226.9 293 42.3
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 1.3e-54 218.0 169 66.3
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 9.3e-53 211.8 160 67.5
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 3.5e-52 209.9 258 48.8
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 1.2e-44 184.9 248 47.6
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 7.1e-29 132.5 189 41.8
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 9.7e-26 122.1 72 79.2
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 2.2e-25 120.9 187 42.8
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 7.7e-23 112.5 135 54.1
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.0e-22 112.1 126 52.4
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 1.4e-19 101.7 111 55.9
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 2.5e-18 97.4 288 27.8
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 6.9e-16 89.4 56 73.2


User provided reference genes

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