Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.0e-65 252.3 128 100.0
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 3.2e-63 245.0 128 95.3
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 2.3e-53 212.2 128 85.9
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 6.5e-48 194.1 123 78.9
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 6.1e-46 187.6 121 77.7
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 1.5e-44 183.0 122 73.0
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.5e-44 182.2 121 71.9
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 4.3e-44 181.4 131 71.8
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 9.7e-44 180.3 129 70.5
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.2e-43 179.1 121 70.2
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 8.5e-40 167.2 129 65.1
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.1e-39 166.8 128 66.4
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.1e-36 156.8 131 62.6
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 3.3e-36 155.2 132 61.4
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 1.3e-35 153.3 125 64.0
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 3.7e-35 151.8 115 66.1
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 4.8e-35 151.4 132 59.1
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 6.3e-35 151.0 111 65.8
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 6.3e-35 151.0 111 66.7
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 1.8e-34 149.4 114 64.9
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 1.8e-34 149.4 113 66.4
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 5.3e-34 147.9 132 60.6
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 1.2e-33 146.7 118 64.4
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 2.6e-33 145.6 112 65.2
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 4.5e-33 144.8 113 67.3
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 7.7e-33 144.1 113 59.3
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 7.7e-33 144.1 113 59.3
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.9e-32 142.1 113 58.4
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 8.5e-32 140.6 114 61.4
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 1.1e-31 140.2 131 59.5
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 1.4e-31 139.8 134 56.0
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.2e-31 138.3 132 54.5
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 7.2e-31 137.5 125 53.6
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 3.6e-30 135.2 125 52.8
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.3e-29 132.5 121 58.7
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 3.0e-29 132.1 115 61.7
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 3.9e-29 131.7 120 60.8
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 3.9e-29 131.7 125 55.2
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 6.7e-29 131.0 134 53.0
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 3.3e-28 128.6 119 58.8
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 7.4e-28 127.5 119 58.0
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 1.3e-27 126.7 116 53.4
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 2.2e-27 125.9 121 54.5
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 2.8e-27 125.6 111 64.9
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 1.4e-26 123.2 115 54.8
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 9.1e-26 120.6 114 54.4
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 2.0e-25 119.4 114 54.4
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.0e-25 119.4 108 56.5
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 3.5e-25 118.6 110 59.1
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 3.5e-25 118.6 110 59.1
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 3.5e-25 118.6 123 55.3
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 3.5e-25 118.6 119 54.6
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 4.5e-25 118.2 120 53.3
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 1.3e-24 116.7 111 53.2
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.7e-24 116.3 114 53.5
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.2e-24 115.9 111 48.6
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 3.8e-24 115.2 113 52.2
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 5.0e-24 114.8 106 54.7
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 1.1e-23 113.6 111 50.5
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.5e-23 112.5 117 52.1
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 4.2e-23 111.7 125 50.4
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 4.2e-23 111.7 125 52.8
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 4.2e-23 111.7 126 50.0
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 7.2e-23 110.9 107 57.9
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 7.2e-23 110.9 109 53.2
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 7.2e-23 110.9 126 50.8
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 1.6e-22 109.8 114 49.1
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 1.6e-22 109.8 125 52.8
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 2.7e-22 109.0 128 50.0
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 3.6e-22 108.6 122 51.6
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 4.7e-22 108.2 113 55.8
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 6.1e-22 107.8 113 50.4
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 5.2e-21 104.8 115 53.0
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 8.8e-21 104.0 117 52.1
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 1.1e-20 103.6 111 50.5
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.5e-20 103.2 107 49.5
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 2.6e-20 102.4 110 52.7
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 3.3e-20 102.1 110 51.8
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 3.3e-20 102.1 107 54.2
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 4.4e-20 101.7 119 46.2
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 4.4e-20 101.7 117 51.3
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 7.4e-20 100.9 126 45.2
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 2.2e-19 99.4 114 48.2
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 3.7e-19 98.6 128 45.3
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 6.3e-19 97.8 120 47.5
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 6.3e-19 97.8 108 50.9
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.1e-18 97.1 108 55.6
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.1e-18 97.1 108 55.6
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 1.8e-18 96.3 128 44.5
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.5e-17 92.0 113 46.9
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 3.5e-17 92.0 128 45.3
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 4.5e-17 91.7 128 45.3
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 7.7e-17 90.9 110 47.3
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 1.0e-16 90.5 127 40.2
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 1.7e-16 89.7 115 45.2
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 2.2e-16 89.4 137 46.7
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 2.2e-16 89.4 123 43.9
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 2.9e-16 89.0 114 46.5
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 3.8e-16 88.6 120 42.5
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 6.5e-16 87.8 117 47.0
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 6.5e-16 87.8 108 45.4
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 8.5e-16 87.4 95 54.7
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 1.9e-15 86.3 111 46.8
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 2.5e-15 85.9 126 45.2
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 3.2e-15 85.5 107 42.1
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 4.2e-15 85.1 126 45.2
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 5.5e-15 84.7 126 39.7
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.6e-14 83.2 120 40.0
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 2.7e-14 82.4 118 41.5
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 2.7e-14 82.4 114 44.7
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 2.7e-14 82.4 132 38.6
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 3.6e-14 82.0 130 40.0
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 4.7e-14 81.6 107 43.0
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 4.7e-14 81.6 122 41.0
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 4.7e-14 81.6 117 41.0
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 6.1e-14 81.3 127 38.6
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 8.0e-14 80.9 130 39.2
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 8.0e-14 80.9 118 41.5
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 8.0e-14 80.9 118 41.5
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 8.0e-14 80.9 118 41.5
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 8.0e-14 80.9 107 45.8
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 1.0e-13 80.5 111 43.2
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 1.4e-13 80.1 121 41.3
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 1.4e-13 80.1 115 42.6
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 2.3e-13 79.3 126 41.3
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 2.3e-13 79.3 129 41.1
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 2.3e-13 79.3 109 43.1
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 5.2e-13 78.2 109 45.0
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 6.8e-13 77.8 117 40.2
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 8.8e-13 77.4 116 40.5
DCAR_008138 Daucus carota HOM05D004992 ORTHO05D006004 1.5e-12 76.6 125 37.6
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.6e-12 75.9 115 41.7
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 2.6e-12 75.9 115 41.7
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.6e-12 75.9 121 37.2
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 4.4e-12 75.1 99 47.5
DCAR_010042 Daucus carota HOM05D004992 ORTHO05D006004 7.5e-12 74.3 129 38.0
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 9.8e-12 73.9 106 41.5
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 3.7e-11 72.0 126 35.7
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 6.3e-11 71.2 127 38.6
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 8.3e-11 70.9 113 41.6
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 5.4e-10 68.2 113 40.7
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 7.0e-10 67.8 105 37.1
PGSC0003DMG400014425 Solanum tuberosum HOM05D000017 ORTHO05D001349 2.7e-09 65.9 143 36.4
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 7.7e-09 64.3 110 40.0
unitig_62.g23278 Utricularia gibba HOM05D004992 ORTHO05D006004 1.1e-07 60.5 106 34.0
Actinidia26927 Actinidia chinensis HOM05D004992 ORTHO05D006004 1.5e-07 60.1 97 42.3
Zm00001eb219890 Zea mays HOM05D004992 ORTHO05D006004 5.5e-07 58.2 117 37.6
ECA236G4773 Erigeron canadensis HOM05D003428 ORTHO05D004131 9.4e-07 57.4 82 43.9
Nitab4.5_0005048g0020 Nicotiana tabacum HOM05D067607 ORTHO05D049378 2.1e-06 56.2 52 57.7
CiPaw.12G127900 Carya illinoinensis HOM05D004992 ORTHO05D006004 6.1e-06 54.7 93 44.1
Lsat_1_v5_gn_5_5200 Lactuca sativa HOM05D007823 ORTHO05D000174 6.1e-06 54.7 42 61.9


User provided reference genes

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