Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 2867.8 1494 100.0
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 2590.5 1510 90.8
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1497.6 1515 56.4
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1494.2 1554 55.0
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1480.7 1520 55.8
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1462.6 1517 54.8
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1427.5 1578 54.1
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1413.3 1507 55.0
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1400.2 1507 54.2
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1398.6 1523 54.5
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1398.3 1516 53.4
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1367.8 1512 52.9
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1365.9 1520 53.3
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1359.7 1529 52.5
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1355.5 1508 52.2
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1350.9 1587 50.0
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1350.1 1526 51.8
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1343.9 1805 46.9
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1339.7 1524 51.2
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1337.0 1522 51.1
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1330.5 1496 50.3
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1326.6 1568 49.7
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1313.1 1511 50.7
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1305.8 1525 50.6
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1303.9 1562 49.0
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1296.6 1616 48.5
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1295.8 1508 52.7
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1282.7 1506 49.3
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1279.2 1505 49.2
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1278.1 1582 49.0
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1275.4 1491 50.3
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1273.1 1513 50.4
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1261.5 1539 50.3
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1261.1 1502 50.2
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1258.8 1512 50.7
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1258.8 1492 50.7
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 0.0e+00 1258.4 1508 49.9
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1245.7 1508 50.1
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1235.7 1492 50.9
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 0.0e+00 1233.8 1496 50.1
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1232.2 1516 49.5
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1228.4 1524 49.0
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 0.0e+00 1228.4 1521 49.1
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 0.0e+00 1221.5 1578 48.5
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1203.0 1508 48.7
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1191.4 1508 48.0
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 0.0e+00 1191.0 1519 49.0
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 0.0e+00 1179.5 1537 48.2
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 0.0e+00 1177.2 1541 47.0
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1167.1 1545 47.0
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1164.8 1542 46.7
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1160.2 1519 47.3
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1159.4 1522 47.0
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 0.0e+00 1156.4 1517 46.7
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 1155.6 1538 46.2
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1154.0 1531 45.9
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 0.0e+00 1151.7 1528 46.7
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1146.0 1548 46.2
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 0.0e+00 1139.8 1540 46.3
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1132.1 1492 47.2
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 0.0e+00 1132.1 1531 46.3
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 0.0e+00 1130.2 1500 46.3
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1127.9 1534 46.2
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 0.0e+00 1126.3 1515 47.0
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 0.0e+00 1115.5 1510 46.0
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 0.0e+00 1115.1 1515 45.5
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 0.0e+00 1109.7 1499 46.0
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 0.0e+00 1109.7 1518 46.2
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 0.0e+00 1101.7 1532 46.3
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 0.0e+00 1096.6 1528 45.6
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 0.0e+00 1086.2 1503 45.6
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 1.1e-308 1063.9 1511 45.7
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 2.6e-305 1052.7 918 61.2
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.4e-303 1047.0 1008 57.5
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 3.5e-302 1042.3 1508 43.9
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 2.0e-297 1026.5 1319 47.9
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 9.8e-297 1024.2 1516 43.5
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 4.6e-294 1015.4 1526 43.8
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.4e-290 1003.8 1557 44.2
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 1.4e-287 993.8 1557 42.6
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.8e-282 976.9 1380 44.1
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 7.5e-281 971.5 1497 42.5
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 2.1e-278 963.4 1498 41.7
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 3.0e-277 959.5 1498 42.2
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 2.3e-269 933.3 1354 45.2
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 5.6e-268 928.7 2370 32.1
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 2.1e-267 926.8 989 52.3
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 3.1e-266 922.9 1496 41.2
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 1.9e-255 887.1 755 62.4
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 4.2e-247 859.4 1545 39.7
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 7.6e-233 812.0 1435 40.5
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.3e-228 796.6 1183 44.9
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 1.1e-220 771.5 1496 37.7
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 7.2e-215 752.3 1287 38.9
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 3.6e-206 723.4 1506 34.2
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 3.2e-199 700.3 772 51.8
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 9.1e-194 682.2 1520 35.5
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 2.9e-192 677.2 950 44.4
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 6.4e-179 632.9 544 60.8
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 1.4e-170 605.1 1492 32.6
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.4e-162 578.6 700 48.3
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 4.6e-153 547.0 885 40.8
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.2e-145 522.3 1403 31.1
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 6.0e-129 466.8 425 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 1.1e-125 456.1 1585 26.9
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 4.6e-121 440.7 413 60.8
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 6.1e-113 413.7 536 45.9
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 5.0e-107 394.0 560 45.5
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 7.2e-106 390.2 625 43.8
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 8.5e-99 366.7 1608 26.3
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 6.7e-96 357.1 464 41.8
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 2.6e-95 355.1 328 62.5
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 4.4e-95 354.4 847 32.0
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 3.7e-94 351.3 1526 25.5
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 2.3e-80 305.4 347 48.7
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.8e-78 298.5 290 51.4
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 3.3e-66 258.5 242 59.9
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 2.2e-62 245.7 436 38.5
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 4.1e-53 214.9 151 72.2
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 5.1e-51 208.0 909 24.8
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.1e-50 206.8 1138 25.0
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 7.1e-45 187.6 236 52.5
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.1e-42 180.3 563 27.4
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 1.9e-42 179.5 153 62.1
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 6.8e-40 171.0 741 25.5
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 1.2e-39 170.2 127 66.1
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 7.3e-34 151.0 408 29.4
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 1.2e-33 150.2 154 53.2
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 6.2e-33 147.9 432 30.8
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 3.3e-26 125.6 462 28.1
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 3.6e-25 122.1 101 58.4
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 4.0e-24 118.6 103 60.2
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 5.8e-23 114.8 184 40.2
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 7.9e-20 104.4 364 26.1
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 1.6e-17 96.7 74 63.5
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 2.0e-15 89.7 709 22.3
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 5.5e-13 81.6 96 51.0
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 3.9e-11 75.5 121 38.8
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 8.7e-11 74.3 73 57.5
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 8.7e-11 74.3 55 69.1
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 4.3e-10 72.0 53 66.0
vmacro07283 Vaccinium macrocarpon HOM05D000340 ORTHO05D012132 2.1e-09 69.7 182 32.4
SHI35683 Sapria himalayana HOM05D000558 ORTHO05D001857 3.8e-06 58.9 153 31.4
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 4.9e-06 58.5 75 42.7


User provided reference genes

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