Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.4e-54 216.1 112 100.0
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 9.7e-48 193.4 111 90.1
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 5.9e-45 184.1 113 88.5
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 2.9e-36 155.2 111 74.8
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 6.9e-30 134.0 103 68.0
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.0e-28 130.2 106 67.9
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.9e-28 128.6 103 67.0
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 3.8e-28 128.3 101 68.3
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 5.0e-28 127.9 111 67.6
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.9e-27 125.9 102 64.7
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 1.9e-27 125.9 107 66.4
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 2.1e-26 122.5 99 66.7
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 6.1e-26 120.9 103 68.0
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 6.1e-26 120.9 101 62.4
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.0e-26 120.6 108 63.0
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 8.0e-26 120.6 108 63.0
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 8.0e-26 120.6 109 65.1
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 2.3e-25 119.0 109 61.5
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 3.0e-25 118.6 107 60.7
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.7e-25 117.5 108 62.0
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 6.7e-25 117.5 107 57.9
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 6.7e-25 117.5 107 57.9
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.6e-24 115.5 110 60.0
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.4e-24 114.8 94 62.8
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 4.4e-24 114.8 113 61.1
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 4.4e-24 114.8 113 61.1
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.7e-24 114.4 92 64.1
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.7e-24 114.4 92 64.1
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 1.7e-23 112.8 100 66.0
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 4.8e-23 111.3 111 54.1
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 4.8e-23 111.3 95 65.3
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 8.2e-23 110.5 103 58.3
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 8.2e-23 110.5 105 52.4
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 1.8e-22 109.4 92 66.3
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 1.8e-22 109.4 109 56.0
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 2.4e-22 109.0 111 52.3
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 2.4e-22 109.0 105 53.3
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 3.1e-22 108.6 103 58.3
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 4.1e-22 108.2 92 66.3
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 4.1e-22 108.2 107 53.3
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 5.3e-22 107.8 112 56.2
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 9.1e-22 107.1 73 71.2
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 9.1e-22 107.1 114 51.8
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.2e-21 106.7 108 57.4
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 1.2e-21 106.7 107 51.4
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.6e-21 105.5 100 57.0
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 3.5e-21 105.1 111 55.0
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 3.5e-21 105.1 101 54.5
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.5e-21 105.1 114 52.6
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 4.5e-21 104.8 102 59.8
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 5.9e-21 104.4 98 57.1
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 7.7e-21 104.0 110 57.3
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 7.7e-21 104.0 99 57.6
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 1.0e-20 103.6 101 59.4
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.3e-20 103.2 114 49.1
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 1.7e-20 102.8 91 61.5
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 1.7e-20 102.8 105 52.4
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 5.0e-20 101.3 106 51.9
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 1.1e-19 100.1 106 50.9
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 1.5e-19 99.8 111 49.5
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 1.9e-19 99.4 102 55.9
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.9e-19 99.4 97 58.8
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 5.5e-19 97.8 111 48.6
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.1e-18 95.9 97 52.6
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.6e-18 95.1 87 57.5
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 4.7e-18 94.7 102 47.1
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 4.7e-18 94.7 102 47.1
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.4e-17 93.2 92 56.5
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.4e-17 93.2 82 59.8
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.4e-17 93.2 98 53.1
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 3.0e-17 92.0 102 52.0
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 3.0e-17 92.0 112 47.3
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 4.0e-17 91.7 99 54.5
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 5.2e-17 91.3 111 48.6
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 5.2e-17 91.3 91 58.2
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 5.2e-17 91.3 102 48.0
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 6.7e-17 90.9 103 47.6
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 1.5e-16 89.7 85 56.5
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 2.0e-16 89.4 109 44.0
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 2.0e-16 89.4 103 46.6
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 2.0e-16 89.4 106 46.2
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.6e-16 89.0 87 54.0
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.6e-16 89.0 86 54.7
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.3e-16 88.6 91 57.1
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.7e-16 87.8 91 56.0
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 7.5e-16 87.4 89 51.7
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.7e-15 86.3 80 53.8
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 2.2e-15 85.9 104 45.2
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 2.2e-15 85.9 92 50.0
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 2.8e-15 85.5 92 48.9
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 3.7e-15 85.1 94 50.0
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 8.2e-15 84.0 93 49.5
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 1.1e-14 83.6 104 48.1
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.1e-14 83.6 91 48.4
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 1.8e-14 82.8 85 55.3
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.8e-14 82.8 108 48.1
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 2.4e-14 82.4 106 47.2
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 2.4e-14 82.4 109 45.9
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 4.1e-14 81.6 107 47.7
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 5.3e-14 81.3 106 47.2
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 7.0e-14 80.9 99 46.5
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 9.1e-14 80.5 93 48.4
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 1.2e-13 80.1 96 46.9
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 1.2e-13 80.1 74 54.1
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 1.6e-13 79.7 106 47.2
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 1.6e-13 79.7 106 47.2
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 1.6e-13 79.7 79 50.6
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 2.0e-13 79.3 106 46.2
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 3.5e-13 78.6 106 45.3
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 5.9e-13 77.8 106 44.3
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 5.9e-13 77.8 106 44.3
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 5.9e-13 77.8 71 54.9
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 1.0e-12 77.0 78 57.7
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 1.0e-12 77.0 82 54.9
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.3e-12 76.6 105 44.8
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 1.3e-12 76.6 85 50.6
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 1.3e-12 76.6 106 43.4
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 1.3e-12 76.6 69 60.9
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 2.2e-12 75.9 97 44.3
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 2.9e-12 75.5 105 43.8
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 2.9e-12 75.5 106 45.3
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 2.9e-12 75.5 89 47.2
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 3.8e-12 75.1 106 46.2
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 5.0e-12 74.7 91 47.3
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 3.2e-11 72.0 105 43.8
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 5.5e-11 71.2 78 48.7
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 5.5e-11 71.2 125 36.8
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 5.5e-11 71.2 71 52.1
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 9.4e-11 70.5 106 42.5
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 9.4e-11 70.5 120 37.5
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 9.4e-11 70.5 120 37.5
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 1.2e-10 70.1 120 36.7
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 1.2e-10 70.1 120 36.7
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.1e-10 69.3 126 36.5
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 2.1e-10 69.3 120 35.8
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 2.1e-10 69.3 108 42.6
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 2.7e-10 68.9 106 42.5
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 3.6e-10 68.6 77 49.4
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 3.6e-10 68.6 123 35.0
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 3.6e-10 68.6 67 55.2
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 8.0e-10 67.4 68 52.9
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 8.0e-10 67.4 109 38.5
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 8.0e-10 67.4 109 38.5
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 8.0e-10 67.4 109 38.5
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 1.0e-09 67.0 104 40.4
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 1.0e-09 67.0 104 40.4
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.4e-09 66.6 120 35.0
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 2.3e-09 65.9 111 37.8
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 2.3e-09 65.9 131 32.8
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 3.0e-09 65.5 109 37.6
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 3.0e-09 65.5 52 65.4
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 6.8e-09 64.3 80 45.0
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 1.2e-08 63.5 97 36.1
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 2.6e-08 62.4 123 35.8
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 3.4e-08 62.0 78 43.6
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 3.4e-08 62.0 78 43.6
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 4.4e-08 61.6 111 37.8
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 9.8e-08 60.5 70 47.1
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.7e-07 59.7 111 36.9
Nitab4.5_0000389g0090 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.7e-07 59.7 62 51.6
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 4.8e-07 58.2 118 33.9
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 6.3e-07 57.8 77 41.6
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 6.3e-07 57.8 77 41.6
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 6.3e-07 57.8 77 41.6
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 8.3e-07 57.4 77 41.6
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 2.4e-06 55.8 59 52.5
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 3.1e-06 55.5 109 33.0
Cfa017341 Carpinus fangiana HOM05D005226 ORTHO05D004666 5.4e-06 54.7 63 54.0


User provided reference genes

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