Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 1.2e-33 146.0 76 100.0
Potri.011G004400 Populus trichocarpa HOM05D007037 ORTHO05D006691 5.8e-28 127.1 77 88.3
Manes.16G006400 Manihot esculenta HOM05D007037 ORTHO05D006691 1.1e-23 112.8 75 74.7
Manes.01G159201 Manihot esculenta HOM05D007037 ORTHO05D006691 5.6e-23 110.5 75 73.3
Sabra04G0006400 Salix brachista HOM05D007037 ORTHO05D006691 2.0e-20 102.1 76 72.4
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 3.4e-20 101.3 76 68.4
Atru.chr10.2236 Acer truncatum HOM05D007037 ORTHO05D006691 9.9e-20 99.8 76 68.4
Thecc.06G221700 Theobroma cacao HOM05D007037 ORTHO05D006691 3.7e-19 97.8 75 62.7
CiPaw.09G092600 Carya illinoinensis HOM05D007037 ORTHO05D006691 6.4e-19 97.1 76 67.1
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 3.2e-18 94.7 75 66.7
Oeu025269.1 Olea europaea HOM05D007037 ORTHO05D006691 1.6e-17 92.4 75 60.0
Prupe.4G019700 Prunus persica HOM05D007037 ORTHO05D006691 2.1e-17 92.0 76 59.2
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 2.7e-17 91.7 76 64.5
RcHm_v2.0_Chr5g0002881 Rosa chinensis HOM05D007037 ORTHO05D006691 3.5e-17 91.3 75 56.0
FAN21G2981 Fragaria x ananassa HOM05D001191 ORTHO05D000979 4.6e-17 90.9 75 57.3
Gorai.009G179200 Gossypium raimondii HOM05D007037 ORTHO05D006691 4.6e-17 90.9 75 64.0
MD10G1322200 Malus domestica HOM05D007037 ORTHO05D006691 4.6e-17 90.9 76 57.9
Gohir.A05G170900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 1.0e-16 89.7 75 62.7
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 1.3e-16 89.4 76 60.5
COL.COLO4_00342 Corchorus olitorius HOM05D007037 ORTHO05D006691 1.7e-16 89.0 75 61.3
Gohir.D05G173900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 1.7e-16 89.0 75 62.7
Eucgr.E04050 Eucalyptus grandis HOM05D007037 ORTHO05D006691 3.0e-16 88.2 75 57.3
Sabra11G0003500 Salix brachista HOM05D007037 ORTHO05D006691 3.0e-16 88.2 71 67.6
FAN25G2740 Fragaria x ananassa HOM05D007037 ORTHO05D006691 5.1e-16 87.4 75 58.7
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 5.1e-16 87.4 76 57.9
MD05G1347800 Malus domestica HOM05D007037 ORTHO05D006691 6.6e-16 87.0 76 56.6
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 6.6e-16 87.0 76 57.9
CSS0026389 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 6.2e-14 80.5 77 55.8
TAR624G1029 Trochodendron aralioides HOM05D007037 ORTHO05D006691 6.2e-14 80.5 81 56.8
Sopen02g011150 Solanum pennellii HOM05D007037 ORTHO05D006691 1.4e-13 79.3 75 53.3
Cc09_g01610 Coffea canephora HOM05D007037 ORTHO05D006691 1.8e-13 79.0 76 57.9
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 3.1e-13 78.2 76 59.2
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 3.1e-13 78.2 76 59.2
Lsat_1_v5_gn_4_60821 Lactuca sativa HOM05D007037 ORTHO05D006691 3.1e-13 78.2 75 53.3
Peaxi162Scf00331g00119 Petunia axillaris HOM05D007037 ORTHO05D006691 4.0e-13 77.8 77 57.1
DCAR_008156 Daucus carota HOM05D007037 ORTHO05D006691 5.2e-13 77.4 77 54.5
ECA234G0681 Erigeron canadensis HOM05D007037 ORTHO05D006691 1.2e-12 76.3 75 52.0
Nitab4.5_0005074g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 1.2e-12 76.3 75 52.0
Aqoxy1G02111 Aquilegia oxysepala HOM05D007037 ORTHO05D006691 2.0e-12 75.5 72 55.6
Sed0008683 Sechium edule HOM05D007037 ORTHO05D006691 4.4e-12 74.3 75 52.0
Nitab4.5_0002827g0030 Nicotiana tabacum HOM05D007037 ORTHO05D006691 9.9e-12 73.2 75 49.3
ClCG01G021940 Citrullus lanatus HOM05D007037 ORTHO05D006691 2.2e-11 72.0 75 53.3
FvH4_3g01970 Fragaria vesca HOM05D007037 ORTHO05D006691 2.2e-11 72.0 75 48.0
TPR.G37004 Trifolium pratense HOM05D007037 ORTHO05D006691 4.9e-11 70.9 75 50.7
CsaV3_6G049020 Cucumis sativus L. HOM05D007037 ORTHO05D006691 6.4e-11 70.5 75 52.0
Medtr2g023440 Medicago truncatula HOM05D007037 ORTHO05D006691 6.4e-11 70.5 77 51.9
SalBow8G3366 Salvia bowleyana HOM05D007037 ORTHO05D006691 8.4e-11 70.1 66 53.0
Sed0010286 Sechium edule HOM05D007037 ORTHO05D006691 8.4e-11 70.1 75 50.7
Sopen02g025300 Solanum pennellii HOM05D007037 ORTHO05D006691 1.1e-10 69.7 79 50.6
PGSC0003DMG400016450 Solanum tuberosum HOM05D007037 ORTHO05D006691 1.1e-10 69.7 79 50.6
Glyma.17G012900 Glycine max HOM05D007037 ORTHO05D006691 1.4e-10 69.3 75 49.3
Psat4g006560 Pisum sativum HOM05D007037 ORTHO05D006691 2.4e-10 68.6 75 53.3
PGSC0003DMG400019869 Solanum tuberosum HOM05D007037 ORTHO05D006691 2.4e-10 68.6 72 54.2
Ca_21080_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 4.1e-10 67.8 75 49.3
Ca_26471_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 4.1e-10 67.8 84 50.0
TPR.G13436 Trifolium pratense HOM05D007037 ORTHO05D006691 5.4e-10 67.4 77 50.6
Lj4g0019440 Lotus japonicus HOM05D007037 ORTHO05D006691 9.2e-10 66.6 75 49.3
vmacro23211 Vaccinium macrocarpon HOM05D007037 ORTHO05D006691 9.2e-10 66.6 76 48.7
CiPaw.10G071700 Carya illinoinensis HOM05D007037 ORTHO05D006691 1.6e-09 65.9 76 47.4
Phvul.003G079400 Phaseolus vulgaris HOM05D007037 ORTHO05D006691 1.6e-09 65.9 75 48.0
Ciclev10018055m.g Citrus clementina HOM05D007037 ORTHO05D006691 2.7e-09 65.1 75 49.3
Glyma.07G261100 Glycine max HOM05D007037 ORTHO05D006691 2.7e-09 65.1 75 48.0
Lj6g0006723 Lotus japonicus HOM05D007037 ORTHO05D006691 1.0e-08 63.2 75 48.0
Gohir.D11G101450 Gossypium hirsutum HOM05D007037 ORTHO05D006691 1.3e-08 62.8 75 50.7
Gorai.007G108200 Gossypium raimondii HOM05D007037 ORTHO05D006691 1.3e-08 62.8 75 50.7
Gorai.013G189700 Gossypium raimondii HOM05D007037 ORTHO05D006691 1.7e-08 62.4 75 54.7
HanXRQChr16g0506491 Helianthus annuus HOM05D007037 ORTHO05D006691 2.3e-08 62.0 77 46.8
Gohir.D13G171150 Gossypium hirsutum HOM05D007037 ORTHO05D006691 3.9e-08 61.2 75 50.7
Gohir.D13G171533 Gossypium hirsutum HOM05D007037 ORTHO05D006691 6.6e-08 60.5 75 53.3
TAR626G0921 Trochodendron aralioides HOM05D007037 ORTHO05D006691 1.1e-07 59.7 73 53.4
Zm00001eb048920 Zea mays HOM05D007037 ORTHO05D006691 1.1e-07 59.7 73 49.3
Aa31LG1G3030 Aethionema arabicum HOM05D007037 ORTHO05D006691 1.5e-07 59.3 61 52.5
vmacro15807 Vaccinium macrocarpon HOM05D007037 ORTHO05D006691 1.5e-07 59.3 89 42.7
Gohir.A11G096766 Gossypium hirsutum HOM05D007037 ORTHO05D006691 2.5e-07 58.5 75 48.0
BcaC05g25043 Brassica carinata HOM05D001191 ORTHO05D000979 4.3e-07 57.8 61 54.1
Medtr4g132230 Medicago truncatula HOM05D007037 ORTHO05D006691 4.3e-07 57.8 75 46.7
A06p08290 Brassica napus HOM05D007037 ORTHO05D006691 5.6e-07 57.4 61 54.1
Migut.M01325 Erythranthe guttata HOM05D007037 ORTHO05D006691 5.6e-07 57.4 75 40.0
Thhalv10009555m.g Eutrema salsugineum HOM05D001191 ORTHO05D000979 7.3e-07 57.0 61 52.5
Lalb_Chr07g0177181 Lupinus albus HOM05D007037 ORTHO05D006691 7.3e-07 57.0 75 40.0
Sp1g10350 Schrenkiella parvula HOM05D001191 ORTHO05D000979 7.3e-07 57.0 61 52.5
Glyma.09G004000 Glycine max HOM05D007037 ORTHO05D006691 9.6e-07 56.6 74 43.2
CARHR012050 Cardamine hirsuta HOM05D007037 ORTHO05D006691 1.2e-06 56.2 60 51.7
Haze_06807 Corylus avellana HOM05D007037 ORTHO05D006691 1.6e-06 55.8 76 43.4
AT1G11740 Arabidopsis thaliana HOM05D001191 ORTHO05D000979 2.1e-06 55.5 60 51.7
C05p09860 Brassica napus HOM05D007037 ORTHO05D006691 2.1e-06 55.5 61 52.5
Peaxi162Scf01204g00120 Petunia axillaris HOM05D007037 ORTHO05D006691 2.1e-06 55.5 76 44.7
Carub.0001s1138 Capsella rubella HOM05D007037 ORTHO05D006691 2.8e-06 55.1 60 50.0
Cfa000214 Carpinus fangiana HOM05D007037 ORTHO05D006691 3.6e-06 54.7 76 42.1
THA.LOC104823525 Tarenaya hassleriana HOM05D007037 ORTHO05D006691 3.6e-06 54.7 61 52.5
AL1G22910 Arabidopsis lyrata HOM05D001191 ORTHO05D000979 4.7e-06 54.3 60 50.0
EL10Ac8g20067 Beta vulgaris HOM05D007037 ORTHO05D006691 4.7e-06 54.3 75 46.7
Lalb_Chr13g0304241 Lupinus albus HOM05D007037 ORTHO05D006691 4.7e-06 54.3 75 40.0
Potri.014G153900 Populus trichocarpa HOM05D009550 ORTHO05D006691 8.1e-06 53.5 79 40.5


User provided reference genes

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