Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G013300 Populus trichocarpa HOM05D006895 ORTHO05D008605 5.6e-107 392.9 758 100.0
Sabra04G0006200 Salix brachista HOM05D006895 ORTHO05D008605 2.1e-69 268.1 720 87.5
Atru.chr8.1949 Acer truncatum HOM05D006895 ORTHO05D008605 9.4e-46 189.5 116 78.4
Atru.BG.222.p Acer truncatum HOM05D006895 ORTHO05D008605 2.1e-45 188.3 116 77.6
MELO3C003111.2 Cucumis melo HOM05D006895 ORTHO05D008605 9.8e-43 179.5 117 70.1
CsaV3_4G024770 Cucumis sativus L. HOM05D006895 ORTHO05D008605 9.8e-43 179.5 117 70.9
Ciclev10013605m.g Citrus clementina HOM05D006895 ORTHO05D008605 4.8e-42 177.2 116 73.3
Thhalv10010142m.g Eutrema salsugineum HOM05D006895 ORTHO05D008605 1.4e-41 175.6 118 70.3
BcaB02g08515 Brassica carinata HOM05D006895 ORTHO05D008605 3.1e-41 174.5 118 69.5
AL5G34670 Arabidopsis lyrata HOM05D006895 ORTHO05D008605 4.1e-41 174.1 118 69.5
AT3G53700 Arabidopsis thaliana HOM05D006895 ORTHO05D008605 4.1e-41 174.1 118 69.5
Sp5g08680 Schrenkiella parvula HOM05D006895 ORTHO05D008605 4.1e-41 174.1 118 68.6
A04p05930 Brassica napus HOM05D006895 ORTHO05D008605 5.4e-41 173.7 118 69.5
C04p38850 Brassica napus HOM05D006895 ORTHO05D008605 5.4e-41 173.7 118 69.5
Haze_20748 Corylus avellana HOM05D006895 ORTHO05D008605 5.4e-41 173.7 116 72.4
CARHR163610 Cardamine hirsuta HOM05D006895 ORTHO05D008605 7.0e-41 173.3 118 69.5
RcHm_v2.0_Chr3g0467211 Rosa chinensis HOM05D006895 ORTHO05D008605 7.0e-41 173.3 113 69.9
Carub.0005s2028 Capsella rubella HOM05D006895 ORTHO05D008605 1.2e-40 172.6 118 68.6
BcaC02g09140 Brassica carinata HOM05D006895 ORTHO05D008605 2.0e-40 171.8 118 68.6
BraA04t16297Z Brassica rapa HOM05D006895 ORTHO05D008605 2.0e-40 171.8 118 68.6
THA.LOC104806571 Tarenaya hassleriana HOM05D006895 ORTHO05D008605 4.5e-40 170.6 116 65.5
BolC4t25457H Brassica oleracea HOM05D006895 ORTHO05D008605 5.9e-40 170.2 118 67.8
Nitab4.5_0003267g0080 Nicotiana tabacum HOM05D006895 ORTHO05D008605 5.9e-40 170.2 116 70.7
AUR62020014 Chenopodium quinoa HOM05D006895 ORTHO05D008605 1.0e-39 169.5 117 68.4
Nitab4.5_0002077g0070 Nicotiana tabacum HOM05D006895 ORTHO05D008605 2.9e-39 167.9 116 69.0
PGSC0003DMG400008927 Solanum tuberosum HOM05D006895 ORTHO05D008605 3.8e-39 167.5 116 69.0
Solyc09g010450.1 Solanum lycopersicum HOM05D006895 ORTHO05D008605 1.5e-38 165.6 115 68.7
Sopen09g005190 Solanum pennellii HOM05D006895 ORTHO05D008605 1.5e-38 165.6 115 68.7
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 1.9e-38 165.2 101 78.2
Ca_09611_v3 Cicer arietinum L. HOM05D006895 ORTHO05D008605 9.5e-38 162.9 116 70.7
CAN.G97.15 Capsicum annuum HOM05D006895 ORTHO05D008605 2.1e-37 161.8 113 69.9
Psat6g065920 Pisum sativum HOM05D006895 ORTHO05D008605 8.0e-37 159.8 114 69.3
Actinidia13132 Actinidia chinensis HOM05D006895 ORTHO05D008605 1.4e-36 159.1 109 68.8
Medtr1g068960 Medicago truncatula HOM05D006895 ORTHO05D008605 2.3e-36 158.3 114 67.5
Oeu049215.1 Olea europaea HOM05D006895 ORTHO05D008605 3.0e-36 157.9 113 65.5
PSO648G0005 Papaver somniferum HOM05D006895 ORTHO05D008605 3.0e-36 157.9 115 65.2
Aqoxy3G03023 Aquilegia oxysepala HOM05D006895 ORTHO05D008605 4.0e-36 157.5 114 66.7
Aa31LG10G9340 Aethionema arabicum HOM05D006895 ORTHO05D008605 6.8e-36 156.8 116 62.9
Manes.08G078400 Manihot esculenta HOM05D006895 ORTHO05D008605 1.5e-35 155.6 157 56.1
Migut.J00352 Erythranthe guttata HOM05D006895 ORTHO05D008605 4.4e-35 154.1 113 62.8
PSO339G3203 Papaver somniferum HOM05D006895 ORTHO05D008605 4.4e-35 154.1 115 63.5
Eucgr.K03156 Eucalyptus grandis HOM05D006895 ORTHO05D008605 7.5e-35 153.3 108 68.5
Sc01g0004190 Simmondsia chinensis HOM05D006895 ORTHO05D008605 1.1e-33 149.4 107 64.5
MD12G1138900 Malus domestica HOM05D006895 ORTHO05D008605 1.4e-33 149.1 98 73.5
Prupe.6G250800 Prunus persica HOM05D006895 ORTHO05D008605 1.4e-33 149.1 101 72.3
Rhsim04G0155800 Rhododendron simsii HOM05D006895 ORTHO05D008605 7.8e-32 143.3 118 58.5
Rhsim04G0155700 Rhododendron simsii HOM05D006895 ORTHO05D008605 1.0e-31 142.9 110 60.9
Migut.O00943 Erythranthe guttata HOM05D006895 ORTHO05D008605 1.3e-31 142.5 104 65.4
FvH4_6g14250 Fragaria vesca HOM05D006895 ORTHO05D008605 8.6e-31 139.8 110 60.0
FAN14G2414 Fragaria x ananassa HOM05D006895 ORTHO05D008605 8.6e-31 139.8 110 60.0
Actinidia05301 Actinidia chinensis HOM05D006895 ORTHO05D008605 1.5e-30 139.0 110 61.8
CiPaw.10G143400 Carya illinoinensis HOM05D006895 ORTHO05D008605 1.9e-30 138.7 111 63.1
FAN05G0539 Fragaria x ananassa HOM05D006895 ORTHO05D008605 1.9e-30 138.7 110 59.1
EL10Ac8g18760 Beta vulgaris HOM05D006895 ORTHO05D008605 3.3e-30 137.9 118 58.5
HanXRQChr01g0026741 Helianthus annuus HOM05D006895 ORTHO05D008605 4.3e-30 137.5 116 56.0
FAN09G2819 Fragaria x ananassa HOM05D006895 ORTHO05D008605 9.5e-30 136.3 110 58.2
ClCG04G008380 Citrullus lanatus HOM05D006895 ORTHO05D008605 3.6e-29 134.4 114 57.0
Ah.09g224140 Amaranthus hybridus HOM05D006895 ORTHO05D008605 6.8e-28 130.2 118 55.1
Sed0013405 Sechium edule HOM05D006895 ORTHO05D008605 6.8e-28 130.2 114 57.0
SGA_v2.0_scaffold126G33817 Striga asiatica HOM05D006895 ORTHO05D008605 2.0e-27 128.6 99 61.6
vmacro08665 Vaccinium macrocarpon HOM05D006895 ORTHO05D008605 2.6e-27 128.3 110 57.3
Gohir.A04G081000 Gossypium hirsutum HOM05D006895 ORTHO05D008605 5.7e-27 127.1 114 54.4
QL07p047413 Quercus lobata HOM05D006895 ORTHO05D008605 5.7e-27 127.1 103 65.0
Thecc.05G043800 Theobroma cacao HOM05D006895 ORTHO05D008605 9.8e-27 126.3 110 57.3
Cpa.g.sc312.1 Carica papaya HOM05D006895 ORTHO05D008605 1.7e-26 125.6 116 55.2
Rhsim04G0155500 Rhododendron simsii HOM05D006895 ORTHO05D008605 1.7e-26 125.6 108 51.9
Zm00001eb043060 Zea mays HOM05D006895 ORTHO05D008605 2.2e-26 125.2 102 58.8
Cfa017422 Carpinus fangiana HOM05D006895 ORTHO05D008605 2.9e-26 124.8 165 46.1
Gohir.D04G119700 Gossypium hirsutum HOM05D006895 ORTHO05D008605 2.9e-26 124.8 114 54.4
Gorai.012G101800 Gossypium raimondii HOM05D006895 ORTHO05D008605 2.9e-26 124.8 114 54.4
TWI77G0080 Tripterygium wilfordii HOM05D006895 ORTHO05D008605 8.3e-26 123.2 151 47.7
CSS0020348 Camellia sinensis var. sinensis HOM05D006895 ORTHO05D008605 1.8e-25 122.1 108 56.5
CSS0025676 Camellia sinensis var. sinensis HOM05D006895 ORTHO05D008605 2.4e-25 121.7 108 56.5
TPR.G30959 Trifolium pratense HOM05D006895 ORTHO05D008605 5.4e-25 120.6 114 53.5
Lj5g0004082 Lotus japonicus HOM05D006895 ORTHO05D008605 9.2e-25 119.8 114 57.0
Os03g0597200 Oryza sativa ssp. japonica HOM05D006895 ORTHO05D008605 1.2e-24 119.4 102 54.9
TAR636G1679 Trochodendron aralioides HOM05D006895 ORTHO05D008605 1.6e-24 119.0 115 50.4
QL05p010620 Quercus lobata HOM05D006895 ORTHO05D008605 2.0e-24 118.6 164 45.7
Rhsim04G0155400 Rhododendron simsii HOM05D006895 ORTHO05D008605 2.7e-24 118.2 108 50.0
Duzib128G0849 Durio zibethinus HOM05D006895 ORTHO05D008605 4.6e-24 117.5 126 49.2
Nn8g40743 Nelumbo nucifera HOM05D006895 ORTHO05D008605 1.0e-23 116.3 109 54.1
Dinv35630 Davidia involucrata HOM05D006895 ORTHO05D008605 1.3e-23 115.9 110 53.6
SalBow3G1315 Salvia bowleyana HOM05D006895 ORTHO05D008605 2.3e-23 115.2 111 53.2
CANSAT80G0660 Cannabis sativa HOM05D006895 ORTHO05D008605 3.0e-23 114.8 109 54.1
Psat6g065880 Pisum sativum HOM05D006895 ORTHO05D008605 3.9e-23 114.4 114 52.6
GSVIVG01025524001 Vitis vinifera HOM05D006895 ORTHO05D008605 8.6e-23 113.2 115 49.6
Phvul.007G157700 Phaseolus vulgaris HOM05D006895 ORTHO05D008605 1.5e-22 112.5 106 51.9
Glyma.13G131600 Glycine max HOM05D006895 ORTHO05D008605 3.3e-22 111.3 105 54.3
Lj2C99T13 Lonicera japonica HOM05D006895 ORTHO05D008605 4.3e-22 110.9 110 50.9
SGA_v2.0_scaffold126G33815 Striga asiatica HOM05D006895 ORTHO05D008605 7.3e-22 110.2 100 55.0
MD04G1122700 Malus domestica HOM05D006895 ORTHO05D008605 2.1e-21 108.6 99 52.5
PGR004G1128 Punica granatum HOM05D006895 ORTHO05D008605 6.2e-21 107.1 99 54.5
VMungo0720G1504 Vigna mungo HOM05D006895 ORTHO05D008605 1.1e-20 106.3 106 50.0
Lalb_Chr02g0153051 Lupinus albus HOM05D006895 ORTHO05D008605 5.2e-20 104.0 145 45.5
TAR633G1621 Trochodendron aralioides HOM05D006895 ORTHO05D008605 6.8e-20 103.6 125 44.8
MBI14_g24311_MAGBIO Magnolia biondii HOM05D006895 ORTHO05D008605 1.2e-19 102.8 158 37.3
Sabra11G0003600 Salix brachista HOM05D001191 ORTHO05D000979 1.3e-18 99.4 69 75.4
DCAR_009247 Daucus carota HOM05D006895 ORTHO05D008605 1.7e-18 99.0 163 38.7
Rhsim04G0155600 Rhododendron simsii HOM05D006895 ORTHO05D008605 6.4e-18 97.1 102 48.0
Rhsim04G0155200 Rhododendron simsii HOM05D006895 ORTHO05D008605 1.4e-17 95.9 159 39.6
MSTRG.5682 Avicennia marina HOM05D006895 ORTHO05D008605 4.1e-17 94.4 151 37.7
ECA248G3443 Erigeron canadensis HOM05D006895 ORTHO05D008605 4.1e-17 94.4 112 43.8
CDE04G3188 Ceratophyllum demersum HOM05D006895 ORTHO05D008605 7.0e-17 93.6 122 40.2
Lsat_1_v5_gn_1_55640 Lactuca sativa HOM05D006895 ORTHO05D008605 2.0e-16 92.0 114 43.9
SEGI_15105 Sequoiadendron giganteum HOM05D006895 ORTHO05D008605 2.7e-16 91.7 85 48.2
Cc06_g02910 Coffea canephora HOM05D006895 ORTHO05D008605 4.6e-16 90.9 164 37.8
ATR0559G329 Amborella trichopoda HOM05D006895 ORTHO05D008605 1.7e-15 89.0 102 45.1
HanXRQChr11g0349291 Helianthus annuus HOM05D006895 ORTHO05D008605 1.7e-15 89.0 142 38.0
VMungo0720G1993 Vigna mungo HOM05D000048 ORTHO05D000207 8.6e-15 86.7 92 44.6
Nn3g21911 Nelumbo nucifera HOM05D006895 ORTHO05D008605 1.9e-14 85.5 105 45.7
Glyma.10G043900 Glycine max HOM05D006895 ORTHO05D008605 3.3e-14 84.7 140 35.7
SGA_v2.0_scaffold135G34956 Striga asiatica HOM05D006895 ORTHO05D000289 1.7e-10 72.4 76 50.0
SEGI_37919 Sequoiadendron giganteum HOM05D006895 ORTHO05D008605 1.9e-06 58.9 120 30.8
AL4G22480 Arabidopsis lyrata HOM05D007402 ORTHO05D003673 5.6e-06 57.4 80 38.8
Carub.0004s0854 Capsella rubella HOM05D007402 ORTHO05D003673 9.5e-06 56.6 80 37.5
CARHR120500 Cardamine hirsuta HOM05D007402 ORTHO05D003673 9.5e-06 56.6 87 35.6


User provided reference genes

Program Settings