Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 6.7e-143 511.1 359 100.0
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 1.9e-113 413.3 345 87.0
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.0e-95 354.4 363 66.4
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 1.0e-95 354.4 363 66.4
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 8.9e-95 351.3 363 71.3
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.7e-93 345.9 362 79.0
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.6e-91 339.0 363 79.9
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 2.5e-89 333.2 363 63.9
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 9.5e-73 278.1 348 58.6
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.2e-62 244.6 321 70.4
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 1.3e-61 241.1 354 49.2
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 2.3e-58 230.3 312 51.9
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 2.3e-58 230.3 365 55.6
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.3e-57 226.5 349 52.4
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 7.3e-57 225.3 362 50.8
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 1.6e-56 224.2 358 50.3
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.6e-56 224.2 339 46.3
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 4.8e-56 222.6 330 55.2
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 4.8e-56 222.6 366 48.4
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 1.8e-55 220.7 397 53.1
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 6.9e-55 218.8 356 50.3
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 3.4e-54 216.5 351 52.1
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 4.5e-54 216.1 338 49.7
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 4.5e-54 216.1 351 51.9
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 5.8e-54 215.7 366 49.5
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 2.2e-53 213.8 346 52.9
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 2.9e-53 213.4 346 50.6
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.9e-53 213.4 369 45.3
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 3.8e-53 213.0 351 45.6
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 6.4e-53 212.2 351 49.0
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.4e-52 211.1 361 49.0
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 3.2e-52 209.9 347 49.6
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 3.2e-52 209.9 340 48.5
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.2e-51 208.0 342 49.7
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 2.1e-51 207.2 334 51.2
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 2.7e-51 206.8 345 53.9
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 3.5e-51 206.5 337 54.9
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 3.5e-51 206.5 374 48.1
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.6e-51 206.1 387 47.5
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.3e-50 204.5 336 49.1
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 3.0e-50 203.4 327 58.4
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 5.1e-50 202.6 367 51.8
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 5.1e-50 202.6 335 45.4
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 6.7e-50 202.2 352 49.4
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 1.1e-49 201.4 324 52.8
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 1.5e-49 201.1 346 45.7
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 1.9e-49 200.7 339 51.6
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 2.5e-49 200.3 338 45.3
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 4.3e-49 199.5 376 44.7
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 7.4e-49 198.7 353 47.3
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.3e-48 198.0 366 44.8
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.3e-48 198.0 353 47.3
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 1.6e-48 197.6 366 47.3
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 2.1e-48 197.2 366 47.3
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 6.2e-48 195.7 367 42.0
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 8.1e-48 195.3 364 43.4
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 8.1e-48 195.3 329 47.7
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 1.4e-47 194.5 373 42.1
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.8e-47 194.1 385 44.4
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 2.4e-47 193.7 362 47.8
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 3.1e-47 193.4 364 48.4
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 3.1e-47 193.4 364 48.4
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 3.1e-47 193.4 364 48.4
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 4.0e-47 193.0 347 43.8
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 5.3e-47 192.6 333 48.3
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 1.2e-46 191.4 357 45.9
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 2.0e-46 190.7 343 52.5
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.0e-46 190.7 377 48.8
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 3.4e-46 189.9 361 45.4
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 3.4e-46 189.9 354 42.1
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 3.4e-46 189.9 380 43.4
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 4.5e-46 189.5 347 42.9
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.0e-45 188.3 369 45.5
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 1.3e-45 188.0 363 43.3
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 1.3e-45 188.0 366 42.9
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 2.2e-45 187.2 355 46.5
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 2.9e-45 186.8 356 44.9
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 4.9e-45 186.0 376 43.4
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 6.5e-45 185.7 378 42.9
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 6.5e-45 185.7 360 44.4
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 8.4e-45 185.3 344 51.5
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 1.1e-44 184.9 369 43.6
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 1.1e-44 184.9 342 52.9
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 1.1e-44 184.9 225 54.7
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 1.4e-44 184.5 376 43.4
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.9e-44 184.1 366 44.3
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 4.2e-44 183.0 366 42.1
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 4.2e-44 183.0 365 43.6
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 5.5e-44 182.6 345 43.5
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 7.1e-44 182.2 362 43.9
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 2.1e-43 180.6 340 49.1
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.5e-43 179.9 370 45.4
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 1.0e-42 178.3 367 46.6
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.3e-42 177.2 351 42.2
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 8.7e-42 175.3 361 51.2
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.1e-41 174.9 333 46.2
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 1.5e-41 174.5 352 46.6
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 9.6e-41 171.8 354 48.9
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 1.6e-40 171.0 385 42.1
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 2.1e-40 170.6 334 39.5
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 6.9e-39 165.6 324 44.8
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 9.0e-39 165.2 320 44.4
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 7.6e-38 162.2 324 44.4
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.3e-37 161.4 367 46.0
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.3e-37 161.4 350 47.7
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 2.9e-37 160.2 407 41.5
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.1e-36 158.3 333 44.1
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 2.5e-36 157.1 326 38.0
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 5.5e-36 156.0 355 43.7
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.2e-35 154.8 343 39.7
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 7.9e-35 152.1 312 36.5
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 7.9e-35 152.1 332 49.1
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.0e-34 151.8 312 46.2
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 1.3e-34 151.4 288 41.7
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 3.0e-34 150.2 305 45.2
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 8.2e-32 142.1 212 56.6
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 8.2e-32 142.1 333 46.8
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 8.2e-32 142.1 417 38.8
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 1.1e-31 141.7 363 38.6
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 4.5e-30 136.3 246 46.3
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 3.8e-29 133.3 368 39.4
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 3.8e-29 133.3 364 38.5
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.4e-28 131.3 347 37.2
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 1.6e-27 127.9 332 37.0
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 2.1e-27 127.5 363 32.5
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 4.6e-27 126.3 303 37.6
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 7.9e-27 125.6 371 39.1
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 1.8e-26 124.4 381 39.6
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 1.8e-26 124.4 170 51.2
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 9.7e-25 118.6 333 39.6
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 1.7e-24 117.9 206 43.2
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.4e-23 114.8 352 34.4
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.8e-23 114.4 306 36.9
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 5.3e-23 112.8 370 33.5
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 2.0e-22 110.9 333 38.7
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 6.5e-21 105.9 356 34.0
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.1e-20 105.1 244 39.8
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.1e-20 105.1 189 43.9
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 1.4e-20 104.8 209 39.7
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 1.9e-20 104.4 297 37.7
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.5e-20 102.8 310 38.7
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 1.8e-18 97.8 214 46.3
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 3.0e-18 97.1 174 44.3
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 7.4e-17 92.4 339 30.7
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.8e-15 87.8 189 38.1
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 7.7e-14 82.4 169 39.6
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 1.7e-13 81.3 155 41.9
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 3.8e-13 80.1 300 30.7
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.7e-10 69.3 118 44.1
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 4.4e-09 66.6 172 34.9
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 6.3e-08 62.8 116 41.4
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-07 61.6 93 49.5
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 3.1e-07 60.5 353 35.7
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 1.2e-06 58.5 362 31.8
Oeu049699.1 Olea europaea HOM05D004496 ORTHO05D005513 5.9e-06 56.2 72 50.0


User provided reference genes

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