Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 2.9e-202 708.4 363 100.0
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 2.1e-184 649.0 341 92.7
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 2.1e-160 569.3 341 80.1
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 2.1e-160 569.3 341 80.1
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 8.8e-159 563.9 339 80.8
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 1.5e-137 493.4 339 71.1
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 2.8e-136 489.2 346 70.8
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 1.8e-135 486.5 333 73.0
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 3.7e-133 478.8 330 70.9
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 4.9e-133 478.4 340 72.1
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.1e-132 477.2 333 71.2
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 2.4e-132 476.1 309 75.4
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 2.4e-132 476.1 328 72.0
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 4.1e-132 475.3 339 69.6
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 1.6e-131 473.4 308 73.1
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 2.0e-131 473.0 322 71.7
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 2.0e-131 473.0 323 73.1
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 6.0e-131 471.5 315 71.4
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 7.8e-131 471.1 337 69.4
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 1.7e-130 469.9 342 70.2
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 2.3e-130 469.5 335 71.3
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 2.3e-130 469.5 306 73.9
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 3.0e-130 469.2 312 71.8
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 6.6e-130 468.0 303 74.3
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 8.6e-130 467.6 342 69.6
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 1.5e-129 466.8 313 71.2
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.5e-129 466.8 346 67.3
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 5.6e-129 464.9 326 70.6
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 9.5e-129 464.2 325 71.4
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 2.1e-128 463.0 311 70.7
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 6.2e-128 461.5 318 70.4
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 8.0e-128 461.1 348 66.7
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 1.8e-127 459.9 303 73.6
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.5e-126 456.8 346 67.9
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 1.5e-126 456.8 331 69.5
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 1.5e-126 456.8 329 68.1
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 2.6e-126 456.1 346 68.2
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 2.6e-126 456.1 315 72.4
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 2.6e-126 456.1 336 69.6
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 9.8e-126 454.1 286 76.9
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 1.7e-125 453.4 330 67.6
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 3.7e-125 452.2 307 70.7
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 4.9e-125 451.8 314 71.3
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 4.9e-125 451.8 313 70.9
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 6.4e-125 451.4 344 68.0
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 6.4e-125 451.4 333 69.4
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 1.1e-124 450.7 317 67.8
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 1.1e-124 450.7 315 69.2
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 1.1e-124 450.7 302 72.8
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 1.4e-124 450.3 322 68.3
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 1.9e-124 449.9 294 76.5
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 2.4e-124 449.5 316 69.3
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 3.2e-124 449.1 328 70.4
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 4.1e-124 448.7 314 71.0
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 4.1e-124 448.7 309 71.2
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 3.5e-123 445.7 306 70.9
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 3.5e-123 445.7 320 68.1
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 3.5e-123 445.7 307 70.0
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 3.5e-123 445.7 322 68.6
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 7.8e-123 444.5 319 66.5
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 1.3e-122 443.7 317 68.8
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 1.7e-122 443.4 288 75.7
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 1.7e-122 443.4 331 65.9
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 3.0e-122 442.6 326 67.8
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 3.0e-122 442.6 302 69.9
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 3.9e-122 442.2 305 70.8
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 5.0e-122 441.8 328 66.5
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 1.1e-121 440.7 345 64.1
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 7.3e-121 438.0 313 69.0
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.6e-120 436.8 313 69.0
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 2.1e-120 436.4 334 64.4
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 2.8e-120 436.0 292 72.6
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 3.6e-120 435.6 306 71.9
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 6.2e-120 434.9 299 70.9
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 1.1e-119 434.1 300 71.0
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 2.3e-119 433.0 299 70.2
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 1.2e-118 430.6 297 70.0
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 1.5e-118 430.3 297 69.7
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 1.7e-117 426.8 297 68.0
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 4.9e-117 425.2 328 65.5
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 9.2e-116 421.0 299 68.6
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.6e-115 420.2 287 71.8
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 2.7e-115 419.5 297 69.0
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 4.6e-115 418.7 315 65.7
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 2.3e-114 416.4 298 68.8
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 2.3e-114 416.4 333 63.7
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 1.2e-112 410.6 340 62.1
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 1.2e-112 410.6 226 84.5
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 4.7e-112 408.7 315 65.7
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 8.1e-112 407.9 287 69.7
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 2.6e-110 402.9 295 67.8
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 7.6e-110 401.4 345 61.2
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 1.1e-108 397.5 346 59.5
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 4.1e-108 395.6 312 65.1
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 1.6e-107 393.7 305 64.6
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 2.3e-106 389.8 265 69.8
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 3.0e-106 389.4 311 62.4
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 8.7e-106 387.9 379 56.7
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.7e-101 373.6 258 65.9
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 1.4e-100 370.5 313 59.4
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.4e-100 370.5 237 75.5
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 2.4e-100 369.8 263 67.7
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 7.8e-99 364.8 315 58.7
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 7.8e-99 364.8 239 73.6
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 5.1e-98 362.1 251 68.1
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 3.3e-97 359.4 302 60.3
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 6.9e-95 351.7 262 65.6
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 3.8e-93 345.9 232 70.7
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 1.8e-87 327.0 248 69.0
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 1.4e-84 317.4 238 66.0
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 3.1e-79 299.7 297 53.5
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 8.4e-77 291.6 341 50.1
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 6.7e-74 282.0 249 60.2
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 1.4e-71 274.2 283 50.9
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 1.2e-70 271.2 216 59.7
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.2e-70 271.2 199 66.8
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.8e-63 247.3 205 56.6
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.0e-61 241.5 201 57.2
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.9e-61 240.0 180 66.7
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 7.2e-60 235.3 184 65.8
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.1e-59 233.8 200 55.5
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 6.1e-59 232.3 210 54.8
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 7.9e-59 231.9 190 57.9
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 8.2e-56 221.9 195 56.9
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 5.0e-53 212.6 195 53.3
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 3.0e-50 203.4 314 42.7
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 1.4e-47 194.5 292 44.2
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 1.5e-44 184.5 111 78.4
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 4.1e-39 166.4 145 54.5
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.0e-37 161.8 156 54.5
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.7e-37 161.0 109 66.1
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 1.4e-34 151.4 87 75.9
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 5.2e-34 149.4 112 65.2
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.7e-32 144.4 102 67.6
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 1.6e-27 127.9 68 82.4
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 1.0e-18 98.6 114 48.2
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 1.9e-15 87.8 65 60.0
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 2.4e-15 87.4 89 57.3
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 3.5e-14 83.6 100 48.0
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 2.3e-13 80.9 81 50.6
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 3.0e-13 80.5 122 40.2
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 8.6e-13 79.0 50 70.0
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 3.3e-12 77.0 37 83.8
Nn3g19263 Nelumbo nucifera HOM05D001659 ORTHO05D001659 2.9e-08 63.9 180 26.7
Prupe.1G061900 Prunus persica HOM05D001659 ORTHO05D001659 3.7e-08 63.5 206 26.7
Solyc08g005550.4 Solanum lycopersicum HOM05D001659 ORTHO05D001659 1.6e-06 58.2 180 25.6
PGSC0003DMG400018484 Solanum tuberosum HOM05D001659 ORTHO05D001659 1.6e-06 58.2 180 25.6
Sopen08g001570 Solanum pennellii HOM05D001659 ORTHO05D001659 2.1e-06 57.8 180 25.6
PRCOL_00006496 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 4.6e-06 56.6 53 56.6
THA.LOC104814432 Tarenaya hassleriana HOM05D001659 ORTHO05D001659 6.0e-06 56.2 177 26.6
CBR_g12318 Chara braunii HOM05D000019 ORTHO05D008477 7.8e-06 55.8 40 55.0


User provided reference genes

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