Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.7e-138 495.4 254 100.0
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.2e-115 418.3 258 84.1
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 3.3e-96 355.5 304 67.1
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 1.4e-94 350.1 259 73.0
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 5.0e-92 341.7 276 69.9
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 8.8e-89 330.9 288 65.6
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 3.7e-87 325.5 262 66.8
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 1.2e-85 320.5 250 68.4
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 5.9e-85 318.2 250 68.4
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 1.0e-84 317.4 260 66.9
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 4.2e-83 312.0 259 66.0
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 8.0e-82 307.8 254 64.2
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.3e-81 306.2 254 63.8
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 5.2e-81 305.1 254 63.0
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.1e-80 303.9 260 63.5
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 5.7e-80 301.6 262 61.5
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 7.5e-80 301.2 247 63.6
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.3e-79 300.4 259 60.6
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 3.7e-79 298.9 257 60.3
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 8.2e-79 297.7 257 59.9
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.1e-78 297.4 259 61.4
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.8e-78 296.6 259 62.2
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 4.1e-78 295.4 262 62.6
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 9.1e-78 294.3 258 60.5
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 2.7e-77 292.7 257 59.5
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 1.3e-76 290.4 249 60.6
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 6.5e-76 288.1 262 59.2
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 2.5e-75 286.2 254 60.2
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.5e-75 286.2 259 60.2
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.5e-75 286.2 260 61.5
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.2e-75 285.4 254 60.2
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.4e-75 284.3 254 60.2
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 8.0e-74 281.2 243 61.3
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 1.8e-73 280.0 220 65.9
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 1.2e-72 277.3 259 56.8
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 4.4e-72 275.4 252 60.3
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 7.5e-72 274.6 260 58.1
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 7.0e-70 268.1 259 57.1
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 9.1e-70 267.7 248 57.3
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.0e-69 266.5 259 57.1
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 2.7e-69 266.2 220 64.1
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 2.2e-68 263.1 260 54.2
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 2.9e-68 262.7 259 57.1
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 8.5e-68 261.2 259 54.8
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 1.9e-67 260.0 259 53.7
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 2.5e-67 259.6 260 55.0
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.5e-67 259.6 233 56.7
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 2.5e-67 259.6 259 55.2
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 3.2e-67 259.2 259 54.1
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 9.4e-67 257.7 259 56.0
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 9.4e-67 257.7 256 56.6
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 9.4e-67 257.7 260 54.6
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 1.2e-66 257.3 258 56.6
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 1.2e-66 257.3 259 54.4
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 2.1e-66 256.5 247 56.7
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 2.7e-66 256.1 259 54.4
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 4.7e-66 255.4 239 54.8
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 1.0e-65 254.2 261 54.8
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 1.4e-65 253.8 261 53.6
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 1.8e-65 253.4 260 53.5
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 4.0e-65 252.3 255 51.8
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 5.2e-65 251.9 260 53.5
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.2e-64 250.8 260 51.5
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 1.5e-64 250.4 264 53.4
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 2.6e-64 249.6 260 51.5
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 5.7e-64 248.4 260 51.9
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 5.7e-64 248.4 260 51.9
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 5.7e-64 248.4 260 51.9
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.3e-63 247.3 258 53.5
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 2.8e-63 246.1 260 50.8
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 2.8e-63 246.1 260 50.8
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 4.9e-63 245.4 253 49.4
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 4.9e-63 245.4 260 53.1
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 6.3e-63 245.0 258 50.4
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 8.3e-63 244.6 241 55.2
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.1e-62 244.2 256 50.8
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.1e-62 244.2 261 50.6
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.1e-62 244.2 261 51.3
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 2.4e-62 243.0 261 53.6
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.4e-62 243.0 241 55.2
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 3.1e-62 242.7 260 50.4
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 5.4e-62 241.9 260 50.0
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 9.2e-62 241.1 261 51.3
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 9.2e-62 241.1 258 51.9
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 1.6e-61 240.4 260 50.8
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 2.0e-61 240.0 260 48.8
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 3.5e-61 239.2 261 51.7
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 3.5e-61 239.2 260 49.6
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 4.5e-61 238.8 260 51.9
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 1.0e-60 237.7 261 52.5
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.3e-60 237.3 261 52.9
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.7e-60 236.9 261 50.2
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 1.7e-60 236.9 258 49.6
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 2.3e-60 236.5 259 52.1
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 2.3e-60 236.5 223 56.5
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 3.8e-60 235.7 241 51.9
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 3.8e-60 235.7 255 52.2
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 5.0e-60 235.3 261 49.4
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 6.6e-60 235.0 259 49.4
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 6.6e-60 235.0 259 49.0
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 8.6e-60 234.6 260 48.8
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 8.6e-60 234.6 260 48.8
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 8.6e-60 234.6 260 48.8
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.9e-59 233.4 260 48.1
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 2.5e-59 233.0 261 48.7
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 2.5e-59 233.0 261 48.7
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 2.5e-59 233.0 261 48.7
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 2.5e-59 233.0 261 49.8
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 4.3e-59 232.3 261 49.0
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 4.3e-59 232.3 261 49.8
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 4.3e-59 232.3 261 49.8
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 7.3e-59 231.5 261 49.4
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 7.3e-59 231.5 261 49.8
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 7.3e-59 231.5 256 50.8
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 3.6e-58 229.2 261 48.7
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.4e-57 227.3 260 46.9
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 4.0e-57 225.7 257 48.2
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 8.9e-57 224.6 229 52.8
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 5.7e-56 221.9 258 49.2
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 9.8e-56 221.1 260 48.1
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 2.9e-55 219.5 256 48.0
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 2.4e-54 216.5 256 47.3
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 7.0e-54 214.9 232 48.7
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 2.0e-53 213.4 225 51.1
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 5.9e-53 211.8 258 44.2
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 5.0e-52 208.8 358 39.7
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 2.5e-51 206.5 260 45.8
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 1.4e-49 200.7 188 58.0
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 8.9e-49 198.0 171 60.8
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 2.6e-48 196.4 265 44.2
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 2.4e-46 189.9 262 41.6
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.2e-45 187.6 257 43.2
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 2.7e-45 186.4 257 42.4
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 2.7e-45 186.4 164 59.8
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 4.6e-45 185.7 253 43.9
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 1.7e-44 183.7 247 42.1
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 6.6e-44 181.8 259 40.9
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 1.1e-43 181.0 258 39.1
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 4.0e-41 172.6 175 56.6
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.1e-36 155.6 114 72.8
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 8.1e-34 148.3 178 47.8
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.4e-33 147.5 198 48.0
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 5.4e-30 135.6 87 80.5
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.3e-28 130.2 135 50.4
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 6.6e-28 128.6 135 49.6
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 7.3e-27 125.2 122 56.6
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 3.6e-18 96.3 87 55.2
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 6.2e-18 95.5 217 31.3
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 3.4e-16 89.7 259 28.6
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.0e-12 78.2 66 53.0
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 1.5e-11 74.3 69 50.7
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 1.9e-11 73.9 68 48.5
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 4.3e-11 72.8 68 50.0
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 4.3e-11 72.8 68 50.0
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 1.4e-09 67.8 95 38.9
Medtr1g055145 Medicago truncatula HOM05D004300 ORTHO05D005171 4.0e-09 66.2 77 45.5
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.6e-08 62.0 44 68.2
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.6e-08 62.0 44 68.2
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 7.6e-08 62.0 44 68.2
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 9.9e-08 61.6 258 25.2
Glyma.03G121400 Glycine max HOM05D004300 ORTHO05D005171 2.4e-06 57.0 39 64.1


User provided reference genes

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