Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 5.4e-209 730.7 361 100.0
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 1.1e-182 643.3 349 91.4
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 5.7e-142 508.1 373 68.1
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 9.7e-142 507.3 350 71.4
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 1.3e-141 506.9 354 70.1
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 1.7e-138 496.5 330 71.8
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 1.7e-138 496.5 330 72.1
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 5.0e-138 495.0 353 70.3
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 2.5e-137 492.7 335 70.1
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 4.7e-136 488.4 345 71.3
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 4.7e-136 488.4 348 67.2
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 4.7e-136 488.4 355 68.5
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 1.4e-135 486.9 382 64.9
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 5.2e-135 485.0 340 70.0
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 6.8e-135 484.6 344 68.6
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 6.8e-135 484.6 341 71.0
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 1.5e-134 483.4 354 69.5
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 1.5e-134 483.4 332 69.6
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 2.0e-134 483.0 337 69.4
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 1.3e-133 480.3 357 65.8
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 1.7e-133 479.9 331 71.0
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 4.8e-133 478.4 343 67.3
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 8.3e-133 477.6 361 66.8
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 1.4e-132 476.9 359 65.7
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 1.8e-132 476.5 348 67.0
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 2.4e-132 476.1 340 68.8
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 3.1e-132 475.7 346 68.8
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 3.1e-132 475.7 361 66.2
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 7.0e-132 474.6 368 64.4
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 2.7e-131 472.6 352 67.3
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 3.5e-131 472.2 339 68.4
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 1.3e-130 470.3 359 64.6
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 2.2e-130 469.5 333 67.3
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 2.2e-130 469.5 359 64.1
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 5.0e-130 468.4 361 64.8
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 1.1e-129 467.2 358 63.7
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 1.9e-129 466.5 349 65.3
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 1.9e-129 466.5 343 66.2
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 5.5e-129 464.9 361 64.3
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 7.2e-129 464.5 358 62.8
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 3.6e-128 462.2 339 66.1
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 3.6e-128 462.2 329 66.3
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 6.1e-128 461.5 317 71.3
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 1.4e-127 460.3 347 66.6
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 1.4e-127 460.3 334 65.9
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 3.4e-126 455.7 341 66.0
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 4.4e-126 455.3 345 64.3
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.3e-125 453.8 352 65.6
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 1.7e-125 453.4 312 70.2
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 1.7e-125 453.4 347 63.1
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 3.7e-125 452.2 297 71.4
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 4.9e-125 451.8 361 64.0
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 1.1e-124 450.7 348 63.8
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 1.8e-124 449.9 356 64.0
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 1.8e-124 449.9 338 63.3
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 5.4e-124 448.4 331 64.7
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 7.0e-124 448.0 350 65.4
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 2.0e-123 446.4 336 64.3
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 7.7e-123 444.5 345 65.5
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 8.6e-122 441.0 363 62.3
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 8.6e-122 441.0 327 67.9
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 1.5e-121 440.3 332 65.4
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 1.9e-121 439.9 365 61.6
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 7.3e-121 438.0 349 62.2
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 9.5e-121 437.6 335 63.6
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 1.2e-120 437.2 338 62.7
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 2.1e-120 436.4 341 62.8
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 2.1e-120 436.4 345 61.4
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 2.8e-120 436.0 345 62.0
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 3.6e-120 435.6 291 72.2
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 4.7e-120 435.3 351 62.4
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 6.1e-120 434.9 336 63.1
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 1.0e-119 434.1 353 61.2
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 1.0e-119 434.1 352 61.9
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 1.0e-119 434.1 345 63.2
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 1.4e-119 433.7 341 62.8
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 4.0e-119 432.2 344 60.8
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 2.0e-118 429.9 343 62.1
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 2.0e-118 429.9 345 62.6
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 2.0e-118 429.9 351 61.0
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 5.7e-118 428.3 352 61.9
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 5.7e-118 428.3 350 62.0
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 1.4e-116 423.7 329 62.9
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 4.1e-116 422.2 341 61.6
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 3.5e-115 419.1 321 64.5
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.1e-113 414.1 368 60.1
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 2.5e-113 412.9 335 69.6
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 5.6e-113 411.8 338 60.9
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 9.5e-113 411.0 291 67.0
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 1.6e-112 410.2 323 65.0
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 2.1e-112 409.8 372 57.3
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 4.4e-110 402.1 246 78.0
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 2.5e-105 386.3 344 57.6
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 4.9e-101 372.1 265 70.2
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 2.7e-99 366.3 371 56.1
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 4.6e-99 365.5 343 54.8
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 4.9e-93 345.5 290 56.2
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 1.9e-89 333.6 241 63.5
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 1.5e-86 323.9 329 50.2
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 7.6e-86 321.6 227 69.6
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 2.2e-85 320.1 326 49.1
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 8.1e-80 301.6 255 61.2
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 2.6e-78 296.6 446 39.2
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 2.3e-74 283.5 309 52.8
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 3.9e-74 282.7 325 47.4
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 5.1e-74 282.3 248 59.7
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 5.1e-74 282.3 462 37.2
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 1.4e-71 274.2 243 60.5
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 2.4e-71 273.5 307 49.5
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 6.9e-71 271.9 260 57.3
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 1.0e-66 258.1 348 42.8
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 8.1e-64 248.4 231 59.7
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 9.0e-63 245.0 218 55.0
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 1.3e-61 241.1 155 80.6
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 1.5e-54 217.6 125 80.0
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 1.3e-53 214.5 162 66.0
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 6.7e-50 202.2 370 35.1
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 6.3e-48 195.7 126 76.2
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 3.8e-45 186.4 177 57.1
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 6.1e-43 179.1 311 36.3
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 9.7e-41 171.8 123 61.0
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 1.1e-39 168.3 415 30.8
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 2.6e-38 163.7 108 75.9
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 3.2e-36 156.8 121 58.7
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 5.9e-30 136.0 146 55.5
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 8.5e-29 132.1 85 70.6
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 1.7e-24 117.9 77 64.9
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 2.7e-22 110.5 63 82.5
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 2.7e-22 110.5 71 73.2
Cfa023409 Carpinus fangiana HOM05D006002 ORTHO05D126491 1.7e-08 64.7 180 29.4
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 2.2e-08 64.3 70 48.6
CAN.G548.23 Capsicum annuum HOM05D006002 ORTHO05D007651 3.7e-08 63.5 119 35.3
PSO675G4619 Papaver somniferum HOM05D000047 ORTHO05D000044 7.0e-07 59.3 106 34.9


User provided reference genes

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