Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 9.4e-31 136.3 75 100.0
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.2e-23 111.3 74 82.4
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 5.5e-15 84.0 70 65.7
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 7.2e-15 83.6 74 63.5
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 9.4e-15 83.2 73 64.4
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 9.4e-15 83.2 71 63.4
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 1.2e-14 82.8 73 61.6
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 4.7e-14 80.9 73 64.4
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 4.7e-14 80.9 69 65.2
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 6.1e-14 80.5 69 66.7
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 8.0e-14 80.1 71 64.8
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.0e-13 79.7 71 64.8
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.4e-13 79.3 71 62.0
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.8e-13 79.0 72 65.3
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 1.8e-13 79.0 68 66.2
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 2.3e-13 78.6 69 63.8
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 2.3e-13 78.6 69 63.8
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 2.3e-13 78.6 73 65.8
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 3.0e-13 78.2 69 60.9
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 5.2e-13 77.4 72 62.5
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 5.2e-13 77.4 69 65.2
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 6.8e-13 77.0 79 60.8
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 6.8e-13 77.0 69 63.8
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 8.8e-13 76.6 72 61.1
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 8.8e-13 76.6 69 59.4
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 8.8e-13 76.6 74 62.2
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.2e-12 76.3 71 62.0
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 1.2e-12 76.3 65 63.1
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 1.5e-12 75.9 73 65.8
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 1.5e-12 75.9 74 62.2
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 1.5e-12 75.9 69 59.4
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.5e-12 75.9 67 65.7
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.5e-12 75.9 62 67.7
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.5e-12 75.9 62 67.7
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 1.5e-12 75.9 71 64.8
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 1.5e-12 75.9 67 61.2
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 2.0e-12 75.5 73 64.4
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 2.0e-12 75.5 69 62.3
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 2.6e-12 75.1 72 61.1
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 3.4e-12 74.7 70 62.9
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 3.4e-12 74.7 69 58.0
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 4.4e-12 74.3 70 60.0
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 4.4e-12 74.3 70 60.0
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 4.4e-12 74.3 69 62.3
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 4.4e-12 74.3 70 62.9
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 4.4e-12 74.3 71 59.2
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 5.7e-12 73.9 73 61.6
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 5.7e-12 73.9 70 62.9
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 5.7e-12 73.9 70 62.9
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 5.7e-12 73.9 71 59.2
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 7.5e-12 73.6 71 63.4
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 7.5e-12 73.6 65 64.6
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 7.5e-12 73.6 67 61.2
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 9.7e-12 73.2 74 59.5
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 9.7e-12 73.2 72 62.5
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 9.7e-12 73.2 70 62.9
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.3e-11 72.8 74 59.5
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 1.3e-11 72.8 69 58.0
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.2e-11 72.0 74 58.1
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.2e-11 72.0 74 58.1
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 2.2e-11 72.0 74 59.5
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 2.2e-11 72.0 71 60.6
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 2.8e-11 71.6 60 66.7
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.8e-11 71.6 73 57.5
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 2.8e-11 71.6 70 58.6
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 4.8e-11 70.9 65 66.2
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 4.8e-11 70.9 70 60.0
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 4.8e-11 70.9 74 56.8
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 4.8e-11 70.9 70 58.6
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 6.3e-11 70.5 68 55.9
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 8.3e-11 70.1 70 60.0
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 8.3e-11 70.1 70 61.4
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 8.3e-11 70.1 62 66.1
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 8.3e-11 70.1 62 66.1
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 1.1e-10 69.7 62 66.1
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.1e-10 69.7 77 55.8
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.1e-10 69.7 62 64.5
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.4e-10 69.3 70 58.6
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 1.4e-10 69.3 65 61.5
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 1.8e-10 68.9 74 62.2
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 1.8e-10 68.9 66 62.1
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 1.8e-10 68.9 73 58.9
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 3.1e-10 68.2 71 56.3
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.1e-10 68.2 75 56.0
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.1e-10 68.2 75 56.0
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.1e-10 68.2 75 56.0
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 3.1e-10 68.2 69 59.4
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 4.1e-10 67.8 64 62.5
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 4.1e-10 67.8 67 58.2
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 5.3e-10 67.4 75 56.0
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 5.3e-10 67.4 73 57.5
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 5.3e-10 67.4 75 54.7
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 7.0e-10 67.0 69 58.0
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 1.2e-09 66.2 66 59.1
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.2e-09 66.2 62 62.9
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.2e-09 66.2 64 60.9
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 1.6e-09 65.9 71 54.9
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 1.6e-09 65.9 71 54.9
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 1.6e-09 65.9 71 54.9
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.6e-09 65.9 63 58.7
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 1.6e-09 65.9 69 53.6
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 1.6e-09 65.9 80 56.2
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 1.6e-09 65.9 63 63.5
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 2.0e-09 65.5 65 58.5
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 2.0e-09 65.5 75 52.0
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.0e-09 65.5 73 54.8
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 2.7e-09 65.1 65 56.9
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 2.7e-09 65.1 71 54.9
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 2.7e-09 65.1 71 54.9
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 2.7e-09 65.1 73 56.2
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 3.5e-09 64.7 71 54.9
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 4.5e-09 64.3 65 55.4
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 4.5e-09 64.3 63 60.3
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 4.5e-09 64.3 73 53.4
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 4.5e-09 64.3 68 54.4
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 5.9e-09 63.9 65 55.4
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 5.9e-09 63.9 69 56.5
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 5.9e-09 63.9 63 58.7
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 7.7e-09 63.5 73 53.4
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.3e-08 62.8 80 48.8
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.7e-08 62.4 71 53.5
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.7e-08 62.4 75 52.0
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.7e-08 62.4 73 54.8
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.7e-08 62.4 57 64.9
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 2.2e-08 62.0 71 53.5
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 2.2e-08 62.0 58 62.1
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.2e-08 62.0 68 54.4
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 2.9e-08 61.6 64 57.8
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 2.9e-08 61.6 71 53.5
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.8e-08 61.2 70 57.1
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 5.0e-08 60.8 53 67.9
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 5.0e-08 60.8 71 54.9
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 5.0e-08 60.8 75 49.3
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 5.0e-08 60.8 71 53.5
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 6.5e-08 60.5 66 62.1
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 6.5e-08 60.5 71 52.1
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 8.5e-08 60.1 64 57.8
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 1.1e-07 59.7 65 52.3
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 1.5e-07 59.3 70 52.9
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 1.9e-07 58.9 51 68.6
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 2.5e-07 58.5 69 52.2
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 2.5e-07 58.5 58 56.9
FvH4_7g00010 Fragaria vesca HOM05D040482 ORTHO05D005453 3.2e-07 58.2 49 71.4
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 7.2e-07 57.0 69 53.6
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 7.2e-07 57.0 60 61.7
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 1.2e-06 56.2 71 50.7
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 1.2e-06 56.2 71 50.7
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 8.0e-06 53.5 65 52.3
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 8.0e-06 53.5 73 50.7


User provided reference genes

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