Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.8e-123 445.3 225 100.0
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.8e-123 445.3 225 100.0
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 5.2e-117 424.5 225 95.6
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 6.8e-117 424.1 225 95.6
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.9e-113 411.0 225 91.1
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 2.3e-101 372.5 224 82.1
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 2.6e-100 369.0 225 80.9
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 6.4e-99 364.4 225 82.7
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 4.1e-98 361.7 226 81.9
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 1.2e-97 360.1 226 81.4
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 1.2e-97 360.1 225 79.1
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 3.9e-96 355.1 225 78.7
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 8.6e-96 354.0 230 78.3
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 8.6e-96 354.0 225 79.6
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 2.5e-95 352.4 231 76.6
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 4.3e-95 351.7 357 57.1
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 1.0e-93 347.1 213 81.7
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.0e-93 347.1 225 78.2
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.4e-93 346.7 225 78.2
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.8e-93 346.3 229 75.5
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 1.8e-93 346.3 225 77.8
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.1e-93 345.5 225 77.8
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 4.0e-93 345.1 225 76.0
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 5.2e-93 344.7 220 76.8
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 6.8e-93 344.4 225 75.1
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 6.8e-93 344.4 225 75.1
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 8.9e-93 344.0 226 77.0
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 1.2e-92 343.6 213 79.8
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.2e-92 343.6 225 76.9
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 1.5e-92 343.2 224 75.4
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 1.5e-92 343.2 225 75.6
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 2.0e-92 342.8 226 77.4
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 2.6e-92 342.4 224 76.3
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 9.8e-92 340.5 220 75.5
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 1.1e-90 337.0 227 71.4
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 3.2e-90 335.5 221 75.1
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 3.2e-90 335.5 227 73.6
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 5.4e-90 334.7 221 72.9
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 1.2e-89 333.6 227 70.0
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 1.6e-89 333.2 219 73.5
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 4.6e-89 331.6 219 73.5
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 6.0e-89 331.3 227 70.9
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 7.8e-89 330.9 219 73.1
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.0e-88 330.5 225 75.6
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 2.3e-88 329.3 226 69.9
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 3.0e-88 328.9 225 72.4
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 5.0e-88 328.2 225 75.1
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 5.0e-88 328.2 218 73.9
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 6.6e-88 327.8 225 71.1
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 6.6e-88 327.8 225 71.1
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 8.6e-88 327.4 225 71.1
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 8.6e-88 327.4 223 72.6
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 1.1e-87 327.0 226 69.9
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.5e-87 326.6 225 70.2
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 2.5e-87 325.9 225 71.1
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 3.3e-87 325.5 228 72.4
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 5.6e-87 324.7 225 69.8
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 5.6e-87 324.7 225 68.4
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 7.3e-87 324.3 225 69.8
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 7.3e-87 324.3 217 74.7
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 7.3e-87 324.3 225 69.8
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 7.3e-87 324.3 219 73.5
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 1.2e-86 323.6 225 69.8
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 1.6e-86 323.2 250 68.8
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 2.8e-86 322.4 224 69.2
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 2.8e-86 322.4 223 71.7
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 3.6e-86 322.0 225 74.2
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 6.2e-86 321.2 217 71.0
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 1.1e-85 320.5 224 69.2
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.4e-85 320.1 232 68.1
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 1.4e-85 320.1 232 68.1
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 8.9e-85 317.4 226 71.7
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.2e-84 317.0 232 65.9
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 2.6e-84 315.8 230 70.9
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 4.4e-84 315.1 225 69.8
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 4.4e-84 315.1 225 69.8
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 4.4e-84 315.1 226 67.3
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 4.4e-84 315.1 211 68.7
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 5.8e-84 314.7 221 69.7
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 5.8e-84 314.7 224 69.6
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 5.8e-84 314.7 227 69.2
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 7.5e-84 314.3 221 71.0
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 7.5e-84 314.3 223 70.9
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 3.7e-83 312.0 225 70.2
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 8.3e-83 310.8 221 67.9
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 8.3e-83 310.8 225 67.6
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 8.3e-83 310.8 229 70.7
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.1e-82 310.5 227 67.0
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 1.4e-82 310.1 220 69.5
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 4.1e-82 308.5 221 67.9
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 1.2e-81 307.0 229 66.8
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 2.1e-81 306.2 326 53.4
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 2.3e-80 302.8 221 69.2
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 5.1e-80 301.6 225 67.6
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 5.1e-80 301.6 221 67.9
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 5.1e-80 301.6 224 67.4
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 1.5e-79 300.1 221 67.0
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 2.5e-79 299.3 225 67.1
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 7.3e-79 297.7 227 66.1
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.8e-78 295.8 220 66.8
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.4e-77 293.5 219 66.2
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 1.8e-77 293.1 225 64.4
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 8.9e-77 290.8 219 66.2
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 1.5e-76 290.0 218 65.1
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 5.8e-76 288.1 223 61.9
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 9.9e-76 287.3 225 66.7
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 1.3e-75 287.0 222 62.6
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 1.7e-75 286.6 224 63.4
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 2.9e-75 285.8 224 63.4
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.1e-74 283.9 222 63.5
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 1.1e-74 283.9 218 62.8
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 1.2e-73 280.4 219 62.1
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 2.1e-73 279.6 225 65.8
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.0e-72 277.3 308 50.3
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 8.6e-72 274.2 215 62.8
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 8.6e-72 274.2 220 59.5
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 3.3e-71 272.3 224 60.3
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 5.6e-71 271.6 221 60.6
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 2.1e-70 269.6 221 59.7
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 4.7e-70 268.5 219 56.6
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 1.8e-69 266.5 219 57.1
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 3.2e-66 255.8 173 72.8
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 4.2e-66 255.4 223 60.5
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 4.6e-65 251.9 153 79.1
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 2.4e-61 239.6 153 75.8
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 7.6e-60 234.6 152 73.7
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 5.1e-56 221.9 152 70.4
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 5.1e-56 221.9 141 74.5
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.1e-54 216.5 176 61.9
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 1.5e-52 210.3 224 55.8
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 4.5e-52 208.8 164 63.4
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 1.6e-49 200.3 130 73.8
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.5e-47 193.7 122 77.9
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 3.1e-45 186.0 118 76.3
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 1.2e-44 184.1 191 53.9
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 8.4e-43 177.9 107 78.5
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.4e-42 177.2 114 75.4
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 6.0e-41 171.8 121 71.9
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 7.9e-41 171.4 111 72.1
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 7.9e-41 171.4 111 72.1
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 4.3e-39 165.6 99 79.8
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 5.7e-39 165.2 119 71.4
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 2.0e-36 156.8 128 68.8
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 3.8e-35 152.5 95 75.8
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 1.1e-34 151.0 144 58.3
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 8.2e-30 134.8 190 36.3
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 1.8e-29 133.7 91 72.5
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 3.4e-28 129.4 107 61.7
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 6.3e-22 108.6 84 65.5
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 2.6e-15 86.7 57 75.4
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 8.2e-14 81.6 61 65.6
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 1.2e-09 67.8 48 70.8
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.6e-09 67.4 76 42.1


User provided reference genes

Program Settings