Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.4e-239 832.8 483 100.0
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 7.3e-193 677.6 479 86.4
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 4.5e-118 429.1 433 59.1
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.4e-114 417.5 429 58.3
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 2.6e-113 413.3 425 57.4
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 3.6e-99 366.3 426 53.1
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 1.6e-94 350.9 492 47.2
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 2.6e-89 333.6 429 50.8
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 6.3e-88 328.9 434 47.9
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 1.0e-85 321.6 439 48.3
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 2.9e-85 320.1 435 49.9
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.0e-82 311.6 440 48.2
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 4.4e-81 306.2 428 48.1
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 2.9e-80 303.5 405 48.1
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 1.9e-79 300.8 443 47.0
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 2.4e-79 300.4 432 46.8
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 7.0e-79 298.9 451 46.1
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 3.0e-77 293.5 410 47.1
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 3.9e-77 293.1 488 42.0
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 6.6e-77 292.4 419 45.3
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 4.3e-76 289.7 487 42.5
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 2.8e-75 287.0 484 41.5
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 3.6e-75 286.6 423 45.4
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.1e-74 285.0 426 45.3
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 4.9e-72 276.2 421 46.3
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 8.3e-72 275.4 439 46.0
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 8.3e-72 275.4 402 46.8
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 1.1e-71 275.0 416 44.0
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 5.4e-71 272.7 439 45.8
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 5.4e-71 272.7 410 46.8
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 9.2e-71 271.9 436 44.7
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 1.7e-69 267.7 433 43.0
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.7e-69 267.7 429 43.4
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 3.9e-69 266.5 299 53.8
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.9e-68 264.2 412 46.8
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 3.3e-68 263.5 440 42.7
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 4.3e-68 263.1 422 43.4
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 1.2e-67 261.5 422 43.8
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 2.8e-67 260.4 418 43.3
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 3.6e-67 260.0 430 42.3
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 3.6e-67 260.0 434 41.0
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 4.7e-67 259.6 409 44.7
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 2.0e-65 254.2 432 41.9
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 9.9e-65 251.9 422 44.1
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 9.9e-65 251.9 441 43.3
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 1.3e-64 251.5 409 43.5
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.7e-64 251.1 402 44.5
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 2.9e-64 250.4 410 43.9
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 8.3e-64 248.8 431 42.0
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 8.3e-64 248.8 430 41.2
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 8.3e-64 248.8 383 43.3
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 1.9e-63 247.7 396 42.9
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 3.2e-63 246.9 401 43.4
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 1.6e-62 244.6 414 41.5
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 2.1e-62 244.2 393 44.5
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 2.1e-62 244.2 441 39.9
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.7e-62 243.8 399 42.4
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 3.5e-62 243.4 379 42.5
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 4.6e-62 243.0 426 42.5
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 4.6e-62 243.0 435 40.5
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 6.0e-62 242.7 383 43.6
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 6.0e-62 242.7 428 42.1
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 7.8e-62 242.3 392 41.1
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 7.8e-62 242.3 430 40.5
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 1.0e-61 241.9 444 39.2
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 1.3e-61 241.5 428 40.7
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.7e-61 241.1 380 42.6
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.0e-61 240.4 394 41.9
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 1.9e-60 237.7 481 38.9
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 4.7e-59 233.0 435 40.0
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 5.8e-57 226.1 413 39.2
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.7e-56 224.6 419 39.1
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.7e-56 224.6 419 39.1
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 6.4e-56 222.6 504 35.9
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.1e-55 221.9 341 42.5
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 3.2e-55 220.3 427 39.6
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 2.7e-54 217.2 420 38.3
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 3.5e-54 216.9 457 38.9
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 3.5e-54 216.9 407 39.8
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 7.8e-54 215.7 324 43.5
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 3.9e-53 213.4 364 41.2
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 6.6e-53 212.6 391 40.9
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 1.1e-52 211.8 372 39.5
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 2.5e-52 210.7 430 37.7
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 2.5e-52 210.7 371 39.1
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 2.5e-52 210.7 367 40.1
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 3.3e-52 210.3 370 40.5
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 3.6e-51 206.8 418 40.7
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 4.8e-51 206.5 323 43.7
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 6.2e-51 206.1 398 38.2
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.4e-50 204.1 351 41.3
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.5e-49 201.4 426 36.9
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.5e-49 201.4 326 42.3
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 1.3e-48 198.4 443 36.8
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 2.4e-47 194.1 388 37.6
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 2.3e-45 187.6 388 37.9
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 6.6e-45 186.0 219 52.1
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 8.7e-45 185.7 337 38.3
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 1.5e-44 184.9 190 54.2
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 4.8e-43 179.9 266 42.1
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 4.8e-43 179.9 428 35.7
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 2.4e-42 177.6 399 35.8
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 2.4e-42 177.6 399 35.8
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 1.5e-41 174.9 399 35.8
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 3.4e-41 173.7 326 38.3
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 9.9e-41 172.2 445 32.8
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 1.7e-40 171.4 391 36.1
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 1.7e-40 171.4 288 40.6
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.8e-40 170.2 450 32.4
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 6.4e-40 169.5 286 43.4
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 1.6e-38 164.9 330 37.3
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 1.9e-36 157.9 335 39.7
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 2.1e-35 154.5 290 41.7
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 4.8e-35 153.3 167 50.9
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 6.2e-35 152.9 425 32.2
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 3.1e-34 150.6 258 42.6
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 6.9e-34 149.4 359 36.8
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 2.2e-32 144.4 436 31.9
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.5e-31 141.0 351 33.9
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.6e-30 138.3 273 34.8
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 1.3e-27 128.6 302 35.1
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 3.7e-27 127.1 429 30.1
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 9.0e-26 122.5 205 48.3
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.6e-25 120.9 150 47.3
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 6.5e-24 116.3 266 33.8
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 5.5e-23 113.2 199 37.7
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 6.1e-22 109.8 133 50.4
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 3.3e-20 104.0 233 36.1
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 3.8e-16 90.5 139 46.8
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.4e-10 72.0 212 33.0
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 7.7e-09 66.2 117 36.8
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.3e-08 65.5 153 33.3
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 3.8e-08 63.9 153 33.3
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 3.6e-06 57.4 69 49.3


User provided reference genes

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