Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G206701 Populus trichocarpa HOM05D006657 ORTHO05D005964 6.2e-42 173.7 88 100.0
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 4.9e-39 164.1 88 95.5
Potri.004G080501 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.1e-38 162.9 88 95.5
Potri.002G230100 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.2e-38 161.4 88 93.2
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 6.0e-29 130.6 75 86.7
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 2.2e-10 68.9 63 58.7
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.3e-10 67.4 61 57.4
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 1.4e-09 66.2 59 57.6
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 1.4e-09 66.2 80 48.8
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 3.1e-09 65.1 77 46.8
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 3.1e-09 65.1 61 54.1
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 4.1e-09 64.7 75 49.3
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 4.1e-09 64.7 59 54.2
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 4.1e-09 64.7 61 54.1
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 5.3e-09 64.3 76 47.4
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 6.9e-09 63.9 64 50.0
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 9.1e-09 63.5 77 45.5
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 2.6e-08 62.0 61 52.5
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 2.6e-08 62.0 61 52.5
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 3.4e-08 61.6 70 48.6
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 3.4e-08 61.6 77 41.6
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.4e-08 61.6 59 49.2
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.4e-08 61.6 61 52.5
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 4.5e-08 61.2 71 42.3
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 5.9e-08 60.8 70 48.6
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 7.7e-08 60.5 80 42.5
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 1.0e-07 60.1 60 48.3
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 1.0e-07 60.1 77 45.5
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.3e-07 59.7 73 42.5
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 1.3e-07 59.7 61 49.2
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 1.7e-07 59.3 77 42.9
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 2.2e-07 58.9 74 43.2
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 2.9e-07 58.5 65 47.7
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.9e-07 58.5 63 41.3
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 2.9e-07 58.5 77 44.2
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.9e-07 58.5 63 50.8
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.9e-07 58.5 77 44.2
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 3.8e-07 58.2 57 54.4
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.8e-07 58.2 77 44.2
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.8e-07 58.2 77 44.2
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 3.8e-07 58.2 61 47.5
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 3.8e-07 58.2 61 47.5
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 5.0e-07 57.8 52 50.0
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 6.5e-07 57.4 70 45.7
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 6.5e-07 57.4 59 45.8
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 6.5e-07 57.4 60 43.3
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 8.5e-07 57.0 77 41.6
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 8.5e-07 57.0 75 41.3
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 8.5e-07 57.0 61 45.9
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 8.5e-07 57.0 61 49.2
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 1.1e-06 56.6 61 45.9
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 1.1e-06 56.6 61 49.2
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 1.9e-06 55.8 62 45.2
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 1.9e-06 55.8 62 45.2
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 1.9e-06 55.8 62 45.2
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 2.5e-06 55.5 85 40.0
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 3.2e-06 55.1 61 44.3
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 3.2e-06 55.1 61 44.3
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 3.2e-06 55.1 84 41.7
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 3.2e-06 55.1 65 46.2
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 3.2e-06 55.1 65 46.2
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 3.2e-06 55.1 59 47.5
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 4.2e-06 54.7 52 51.9
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 7.2e-06 53.9 83 37.3
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 9.4e-06 53.5 62 41.9


User provided reference genes

Program Settings