Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 4.7e-138 494.6 259 100.0
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 5.5e-131 471.1 257 94.6
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 5.1e-92 341.7 256 70.3
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 2.9e-87 325.9 269 65.8
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 4.9e-87 325.1 271 65.3
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 6.4e-87 324.7 269 65.4
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.1e-86 323.9 269 65.4
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 1.9e-86 323.2 267 66.7
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 4.2e-86 322.0 271 64.9
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 7.1e-86 321.2 251 70.1
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 7.1e-86 321.2 262 65.3
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 6.0e-85 318.2 250 65.2
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 2.3e-84 316.2 266 65.4
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 3.0e-84 315.8 252 70.2
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.5e-83 313.5 250 65.2
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 1.5e-83 313.5 250 65.2
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 1.9e-83 313.2 262 66.4
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 2.5e-83 312.8 205 75.6
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 7.3e-83 311.2 262 64.9
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 1.3e-82 310.5 252 69.8
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 1.6e-82 310.1 248 66.9
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 4.8e-82 308.5 220 72.3
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 4.8e-82 308.5 254 65.0
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 1.1e-81 307.4 203 75.4
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 1.1e-81 307.4 218 73.4
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 1.1e-81 307.4 256 65.6
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 1.4e-81 307.0 249 66.3
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 1.8e-81 306.6 245 66.9
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 3.1e-81 305.8 260 63.8
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 3.1e-81 305.8 262 64.1
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 4.0e-81 305.4 250 66.0
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 5.3e-81 305.1 229 67.2
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 6.9e-81 304.7 203 75.9
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 6.9e-81 304.7 251 65.3
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 6.9e-81 304.7 251 65.3
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 6.9e-81 304.7 200 77.0
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 9.0e-81 304.3 263 66.2
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 2.0e-80 303.1 218 72.5
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 2.0e-80 303.1 218 72.5
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 2.6e-80 302.8 220 74.1
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 2.6e-80 302.8 205 74.1
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 3.4e-80 302.4 216 71.8
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 3.4e-80 302.4 255 62.4
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 4.5e-80 302.0 255 62.4
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 4.5e-80 302.0 255 64.3
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 7.6e-80 301.2 218 72.0
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 2.2e-79 299.7 250 63.6
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 2.9e-79 299.3 220 71.4
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 4.9e-79 298.5 190 77.9
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 4.9e-79 298.5 220 70.9
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 2.4e-78 296.2 258 63.6
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 3.2e-78 295.8 260 62.3
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 4.2e-78 295.4 257 62.3
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 4.2e-78 295.4 222 67.6
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 9.3e-78 294.3 215 71.2
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 2.1e-77 293.1 254 64.2
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 2.7e-77 292.7 257 61.9
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 3.5e-77 292.4 190 73.7
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 6.0e-77 291.6 191 77.0
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 1.3e-76 290.4 193 75.6
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 3.0e-76 289.3 252 59.1
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 3.9e-76 288.9 201 70.6
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 3.9e-76 288.9 237 64.6
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 1.1e-75 287.3 247 63.6
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 1.9e-75 286.6 194 72.7
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 3.3e-75 285.8 201 70.6
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 4.3e-75 285.4 207 69.1
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 1.3e-74 283.9 248 63.3
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 1.6e-74 283.5 195 71.8
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 1.6e-74 283.5 195 71.8
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 3.7e-74 282.3 215 70.7
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 3.7e-74 282.3 207 68.6
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 4.8e-74 282.0 216 66.7
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.1e-73 280.8 198 73.2
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 4.0e-73 278.9 251 61.8
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 6.9e-73 278.1 205 71.2
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 9.0e-73 277.7 255 60.4
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 1.5e-72 276.9 205 68.3
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 1.3e-71 273.9 204 70.1
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 2.9e-71 272.7 204 70.6
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 2.1e-69 266.5 201 69.2
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 1.3e-68 263.8 190 70.0
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 6.7e-68 261.5 226 65.0
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 1.9e-67 260.0 269 56.1
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 1.9e-67 260.0 269 56.9
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 1.9e-67 260.0 188 67.0
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 3.3e-67 259.2 198 68.2
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 3.3e-67 259.2 198 68.2
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 1.3e-66 257.3 272 55.5
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 1.6e-66 256.9 269 55.8
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 2.8e-66 256.1 272 55.1
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 2.8e-66 256.1 265 56.2
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 4.8e-66 255.4 268 56.3
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 4.8e-66 255.4 271 55.7
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 1.4e-65 253.8 277 54.9
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 1.5e-64 250.4 192 66.1
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 2.6e-64 249.6 192 65.6
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 3.4e-64 249.2 223 60.1
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 1.3e-63 247.3 237 57.8
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 1.7e-63 246.9 253 54.2
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 6.5e-63 245.0 236 58.9
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 1.1e-62 244.2 255 56.5
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 1.2e-61 240.7 164 71.3
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 2.2e-58 229.9 175 62.9
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 2.8e-58 229.6 151 76.2
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 1.7e-55 220.3 178 63.5
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 3.8e-55 219.2 175 63.4
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 1.4e-54 217.2 192 57.8
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 5.7e-51 205.3 141 72.3
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 5.7e-51 205.3 197 59.4
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 5.9e-48 195.3 147 68.0
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 1.2e-27 127.9 98 66.3
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 1.5e-27 127.5 93 71.0
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 1.0e-23 114.8 98 61.2
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 2.3e-20 103.6 71 69.0
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-17 93.2 105 40.0
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 1.7e-15 87.4 71 57.7
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-15 85.9 163 35.6
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 5.2e-12 75.9 75 57.3
MBI13_g31543_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 4.5e-08 62.8 96 43.8
Aqoxy4G00577 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 1.3e-07 61.2 50 62.0
Actinidia06890 Actinidia chinensis HOM05D006682 ORTHO05D054450 3.9e-07 59.7 59 50.8


User provided reference genes

Program Settings