Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.5e-118 429.5 216 100.0
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.1e-87 327.0 208 81.2
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 8.5e-85 317.4 210 79.0
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 5.9e-70 268.1 216 64.8
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 5.9e-70 268.1 208 67.3
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 2.3e-69 266.2 220 64.1
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 1.1e-68 263.8 205 63.9
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 7.3e-68 261.2 216 64.8
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 4.7e-67 258.5 216 63.0
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 8.9e-66 254.2 206 64.6
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 5.8e-65 251.5 206 64.6
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 7.5e-65 251.1 206 64.1
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 9.8e-65 250.8 206 64.1
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 2.2e-64 249.6 220 62.3
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 6.4e-64 248.1 215 61.9
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 8.3e-64 247.7 220 61.4
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 1.9e-63 246.5 215 61.4
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 5.4e-63 245.0 206 62.1
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.0e-62 243.0 205 62.4
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 3.5e-62 242.3 206 61.7
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 3.9e-61 238.8 211 59.2
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 1.5e-60 236.9 208 60.1
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 2.5e-60 236.1 222 58.6
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 1.2e-59 233.8 211 59.7
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 1.6e-59 233.4 210 60.5
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 2.8e-59 232.6 218 56.4
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 4.7e-59 231.9 208 58.7
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 6.2e-59 231.5 208 59.6
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 8.1e-59 231.1 207 60.4
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.1e-58 230.7 214 58.9
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 1.5e-57 226.9 208 57.2
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 2.0e-57 226.5 208 57.2
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 2.6e-57 226.1 212 59.0
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 4.4e-57 225.3 215 56.3
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 5.8e-57 224.9 230 51.3
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 5.8e-57 224.9 211 59.2
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.3e-56 223.8 216 55.6
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 1.3e-56 223.8 210 57.6
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 1.3e-56 223.8 211 59.2
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 3.7e-56 222.2 217 55.8
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 3.7e-56 222.2 220 56.8
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 3.7e-56 222.2 226 55.3
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 8.3e-56 221.1 208 58.7
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 8.3e-56 221.1 216 55.1
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 1.4e-55 220.3 215 54.9
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 3.2e-55 219.2 211 58.3
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 7.1e-55 218.0 172 63.4
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.2e-54 217.2 209 56.9
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 2.1e-54 216.5 217 57.6
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 4.6e-54 215.3 221 56.1
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 1.0e-53 214.2 220 55.9
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 5.1e-53 211.8 212 55.2
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 8.6e-53 211.1 217 53.5
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 2.5e-52 209.5 168 63.7
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 1.2e-51 207.2 216 53.2
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 1.6e-51 206.8 217 53.9
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 3.6e-51 205.7 219 53.9
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 4.7e-51 205.3 180 55.6
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.1e-50 204.1 220 52.7
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.8e-50 203.4 220 52.3
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 2.3e-50 203.0 218 52.8
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 2.3e-50 203.0 216 54.2
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 5.2e-50 201.8 216 53.2
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 8.9e-50 201.1 220 51.8
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 2.0e-49 199.9 180 57.2
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.0e-49 199.9 180 57.2
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 2.6e-49 199.5 212 50.0
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 3.4e-49 199.1 211 59.7
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 3.4e-49 199.1 175 58.3
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.3e-48 197.2 213 49.3
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 4.9e-48 195.3 304 41.8
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 1.1e-47 194.1 220 50.0
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.4e-47 193.7 213 49.3
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 3.2e-47 192.6 180 58.3
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 1.2e-46 190.7 168 60.7
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 3.5e-46 189.1 213 49.3
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 4.6e-46 188.7 220 49.1
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 4.6e-46 188.7 214 50.9
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 6.0e-46 188.3 213 47.4
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 1.0e-45 187.6 190 53.2
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 1.9e-44 183.3 195 52.3
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 3.3e-44 182.6 215 47.9
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 2.0e-41 173.3 214 48.6
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 2.6e-41 172.9 212 48.6
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 3.4e-41 172.6 215 47.4
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 4.4e-41 172.2 170 54.1
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 9.9e-41 171.0 223 45.7
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 8.4e-40 167.9 142 61.3
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 1.1e-39 167.5 209 45.9
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 1.1e-39 167.5 209 45.5
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 1.9e-39 166.8 202 46.5
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 2.4e-39 166.4 140 62.1
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 2.4e-39 166.4 211 46.4
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 2.4e-39 166.4 141 59.6
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 5.4e-39 165.2 140 62.1
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 7.1e-39 164.9 207 44.4
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 7.1e-39 164.9 153 59.5
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 4.6e-38 162.2 180 47.8
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 1.7e-37 160.2 210 44.3
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 3.0e-37 159.5 178 52.2
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 5.1e-37 158.7 201 45.3
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 8.7e-37 157.9 132 58.3
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.9e-36 156.8 187 47.6
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 2.5e-36 156.4 200 47.5
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 7.3e-36 154.8 206 42.2
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.8e-35 152.9 183 46.4
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 2.8e-35 152.9 132 56.8
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 1.8e-34 150.2 204 44.1
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 5.3e-34 148.7 179 47.5
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 2.0e-33 146.7 199 43.7
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 7.6e-33 144.8 182 45.1
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 7.6e-33 144.8 209 41.6
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 7.6e-33 144.8 171 43.9
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 9.9e-33 144.4 187 42.8
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 4.9e-32 142.1 207 43.0
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 1.9e-31 140.2 195 42.6
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 2.4e-31 139.8 206 39.8
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 1.2e-30 137.5 175 45.1
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.6e-30 137.1 119 59.7
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 2.1e-30 136.7 145 51.0
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 2.1e-30 136.7 181 43.1
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 4.6e-30 135.6 181 43.6
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 6.0e-30 135.2 176 41.5
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 6.0e-30 135.2 175 44.6
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 7.9e-30 134.8 155 49.0
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 1.3e-29 134.0 179 44.7
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.8e-29 133.7 159 46.5
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 3.9e-29 132.5 113 61.1
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 5.1e-29 132.1 136 48.5
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 6.7e-29 131.7 121 58.7
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 8.7e-29 131.3 207 39.1
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.5e-28 130.6 127 53.5
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 2.5e-28 129.8 193 39.4
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 9.6e-28 127.9 143 47.6
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 4.8e-27 125.6 182 39.0
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 4.0e-26 122.5 130 48.5
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 2.6e-25 119.8 123 48.0
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.4e-25 119.4 123 52.8
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 7.6e-25 118.2 205 37.1
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 1.3e-24 117.5 172 41.3
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 2.2e-24 116.7 120 45.0
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 4.9e-24 115.5 151 42.4
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.1e-23 114.4 91 57.1
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.6e-22 110.5 141 46.1
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 1.1e-20 104.4 102 55.9
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 3.3e-20 102.8 198 35.4
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 1.6e-19 100.5 101 48.5
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 2.8e-19 99.8 233 36.1
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 2.4e-18 96.7 78 60.3
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 2.4e-18 96.7 184 37.5
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 5.3e-18 95.5 99 53.5
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 4.9e-16 89.0 122 36.1
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 2.7e-14 83.2 59 64.4
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 1.8e-13 80.5 87 52.9
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.8e-13 80.5 87 52.9
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 3.0e-13 79.7 127 36.2
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 6.7e-13 78.6 167 32.3
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 1.1e-12 77.8 179 33.5
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.5e-12 77.4 116 39.7
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 1.8e-10 70.5 61 49.2
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 2.4e-10 70.1 89 42.7
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 5.3e-10 68.9 97 40.2
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 6.9e-10 68.6 97 39.2
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.6e-09 66.6 91 41.8
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 2.6e-09 66.6 96 38.5
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 1.1e-07 61.2 93 31.2
Dinv31495 Davidia involucrata HOM05D004603 ORTHO05D005244 9.3e-07 58.2 73 52.1
AT1G34550 Arabidopsis thaliana HOM05D000499 ORTHO05D002825 1.2e-06 57.8 99 38.4
MCO07G134 Micromonas commoda HOM05D004603 ORTHO05D005244 4.6e-06 55.8 72 41.7


User provided reference genes

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