Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 3.2e-107 391.7 192 100.0
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 8.1e-103 377.1 201 93.5
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 1.2e-101 373.2 189 94.2
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 2.6e-101 372.1 189 95.2
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 9.9e-101 370.2 189 94.2
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 2.9e-100 368.6 192 93.2
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.9e-100 368.6 192 93.2
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.9e-100 368.6 192 93.2
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 3.8e-100 368.2 191 93.2
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 4.9e-100 367.9 188 94.1
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 4.9e-100 367.9 189 92.6
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 4.9e-100 367.9 189 92.6
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 4.9e-100 367.9 189 92.6
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 4.9e-100 367.9 189 92.1
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 6.4e-100 367.5 190 92.6
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 6.4e-100 367.5 189 92.6
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 8.4e-100 367.1 189 93.1
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 8.4e-100 367.1 192 92.7
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 8.4e-100 367.1 189 92.1
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 1.1e-99 366.7 188 92.0
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 1.1e-99 366.7 189 93.7
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.4e-99 366.3 189 93.1
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 1.4e-99 366.3 189 93.1
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.4e-99 366.3 189 92.6
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 2.4e-99 365.5 189 92.6
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 3.2e-99 365.2 188 93.1
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 3.2e-99 365.2 189 92.1
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 4.1e-99 364.8 189 92.1
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 4.1e-99 364.8 192 90.1
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 4.1e-99 364.8 189 93.7
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 4.1e-99 364.8 188 93.1
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 4.1e-99 364.8 189 92.1
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 4.1e-99 364.8 189 92.1
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 5.4e-99 364.4 189 92.1
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 7.1e-99 364.0 189 92.6
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 7.1e-99 364.0 189 92.1
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 7.1e-99 364.0 189 92.1
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 7.1e-99 364.0 189 92.1
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 9.2e-99 363.6 189 92.6
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.2e-98 363.2 189 92.1
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 1.2e-98 363.2 190 90.5
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 1.2e-98 363.2 189 92.1
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.6e-98 362.8 189 91.5
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 1.6e-98 362.8 189 91.0
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 1.6e-98 362.8 189 92.1
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 2.1e-98 362.5 189 92.1
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 2.1e-98 362.5 189 92.6
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.1e-98 362.5 189 91.5
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 2.1e-98 362.5 189 91.5
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 2.1e-98 362.5 189 92.1
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.1e-98 362.5 189 92.6
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 2.7e-98 362.1 189 92.6
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 2.7e-98 362.1 189 91.0
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 3.5e-98 361.7 189 92.6
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 4.6e-98 361.3 189 91.5
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 7.8e-98 360.5 189 90.5
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 7.8e-98 360.5 189 91.5
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 7.8e-98 360.5 190 90.5
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 7.8e-98 360.5 189 92.1
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 1.0e-97 360.1 189 91.0
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.7e-97 359.4 189 91.0
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 2.3e-97 359.0 189 89.4
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 2.3e-97 359.0 189 91.5
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 2.3e-97 359.0 190 91.1
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 2.3e-97 359.0 188 92.0
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.3e-97 359.0 188 92.6
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 2.3e-97 359.0 189 91.0
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 3.0e-97 358.6 189 89.4
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 3.9e-97 358.2 189 90.5
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 3.9e-97 358.2 188 90.4
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 6.6e-97 357.5 190 89.5
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 8.7e-97 357.1 183 93.4
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 8.7e-97 357.1 189 88.9
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 8.7e-97 357.1 191 89.5
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 1.9e-96 355.9 189 90.5
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.5e-96 355.5 195 90.3
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 5.6e-96 354.4 189 87.8
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 5.6e-96 354.4 188 88.3
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 5.6e-96 354.4 188 88.3
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 1.2e-95 353.2 188 87.8
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 1.6e-95 352.8 189 86.8
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 2.1e-95 352.4 210 83.3
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 2.1e-95 352.4 189 87.3
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 2.1e-95 352.4 188 87.2
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 4.7e-95 351.3 188 87.8
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 4.7e-95 351.3 196 87.2
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.1e-94 350.1 188 90.4
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 1.4e-94 349.7 188 87.8
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 1.8e-94 349.4 216 80.1
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 3.1e-94 348.6 201 86.1
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 3.1e-94 348.6 216 81.0
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 5.2e-94 347.8 189 84.7
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 2.6e-93 345.5 193 87.0
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.7e-92 342.8 189 83.1
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 6.4e-92 340.9 230 75.7
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 8.4e-92 340.5 189 83.1
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.2e-91 338.6 189 82.0
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 1.6e-90 336.3 189 80.4
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 2.1e-90 335.9 189 81.0
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 4.3e-88 328.2 171 91.2
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 1.6e-87 326.2 189 77.8
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 8.1e-87 323.9 189 81.5
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.4e-86 323.2 181 86.7
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.4e-86 323.2 181 86.7
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 9.0e-86 320.5 188 77.1
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 9.0e-86 320.5 188 77.7
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 2.0e-85 319.3 171 87.1
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 2.1e-82 309.3 160 92.5
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 2.7e-82 308.9 160 91.9
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 2.7e-82 308.9 167 89.2
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 5.1e-81 304.7 160 91.2
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 6.4e-76 287.7 161 86.3
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 2.4e-75 285.8 174 82.2
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 6.7e-73 277.7 209 68.4
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 2.6e-69 265.8 188 68.6
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 2.2e-63 246.1 140 85.7
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.8e-63 245.7 188 63.8
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.4e-59 233.4 190 60.5
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 7.2e-59 231.1 210 53.8
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 2.5e-56 222.6 115 91.3
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 9.7e-56 220.7 149 73.8
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 5.9e-53 211.5 129 81.4
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 1.7e-52 209.9 112 89.3
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.1e-51 207.2 109 92.7
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 2.5e-51 206.1 106 88.7
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 3.2e-51 205.7 158 65.8
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 5.5e-51 204.9 109 92.7
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 7.2e-51 204.5 109 91.7
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 7.0e-38 161.4 79 93.7
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 7.0e-38 161.4 79 92.4
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 2.0e-37 159.8 79 91.1
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 2.0e-37 159.8 79 91.1
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.2e-36 156.4 81 86.4
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 1.9e-35 153.3 84 88.1
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.2e-35 152.1 157 47.1
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 7.2e-35 151.4 81 91.4
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 2.6e-32 142.9 72 88.9
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 6.3e-31 138.3 69 89.9
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 2.4e-30 136.3 69 89.9
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 1.9e-27 126.7 87 78.2
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 2.5e-27 126.3 68 85.3
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 1.2e-26 124.0 68 83.8
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 1.2e-26 124.0 68 83.8
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 9.5e-19 97.8 51 84.3
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 4.0e-17 92.4 47 85.1
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 1.7e-12 77.0 40 87.5
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 1.7e-12 77.0 40 87.5
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 1.7e-12 77.0 40 87.5
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 1.7e-12 77.0 40 87.5
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 3.8e-12 75.9 37 91.9


User provided reference genes

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