Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 3.9e-131 471.5 236 100.0
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 6.4e-102 374.4 307 66.4
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 4.9e-94 348.2 235 76.6
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 5.3e-56 221.9 151 75.5
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 3.5e-55 219.2 231 54.1
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 2.2e-46 189.9 237 47.7
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 3.8e-46 189.1 239 48.5
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 8.5e-46 188.0 236 46.6
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.5e-45 187.2 236 46.2
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.9e-45 186.8 236 46.2
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.5e-45 186.4 236 46.2
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 9.4e-45 184.5 235 46.8
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 4.0e-43 179.1 236 45.3
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 4.0e-43 179.1 239 44.4
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 5.7e-42 175.3 240 45.8
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 1.3e-41 174.1 233 46.4
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 1.1e-40 171.0 238 42.9
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 4.1e-40 169.1 243 43.6
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 2.0e-39 166.8 258 42.2
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 2.7e-39 166.4 235 45.5
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 2.7e-39 166.4 232 45.3
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 2.8e-36 156.4 234 43.2
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 1.0e-35 154.5 239 40.6
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 8.9e-35 151.4 184 51.1
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 1.5e-34 150.6 240 40.8
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 7.5e-34 148.3 256 39.5
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 7.5e-34 148.3 230 42.2
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 4.9e-33 145.6 241 38.6
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 2.0e-31 140.2 208 42.3
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 3.0e-30 136.3 236 38.6
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 1.2e-28 131.0 213 40.8
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 2.1e-28 130.2 170 50.0
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 2.1e-28 130.2 226 37.2
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.0e-27 127.9 163 47.2
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 6.8e-27 125.2 176 43.8
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 8.9e-27 124.8 179 43.6
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 8.9e-27 124.8 179 43.6
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 8.9e-27 124.8 203 41.9
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 3.7e-25 119.4 127 52.0
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 6.4e-25 118.6 181 42.5
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 9.2e-24 114.8 153 45.8
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 7.8e-23 111.7 155 42.6
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 2.3e-22 110.2 143 47.6
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.1e-21 107.8 99 57.6
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.1e-21 107.8 99 57.6
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.9e-21 107.1 155 41.9
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 2.5e-21 106.7 229 35.4
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 7.3e-21 105.1 172 37.8
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 2.8e-20 103.2 248 33.9
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 5.2e-19 99.0 147 40.8
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 6.8e-19 98.6 153 42.5
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 2.0e-18 97.1 194 37.1
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 2.6e-18 96.7 214 34.6
TAR623G0806 Trochodendron aralioides HOM05D007266 ORTHO05D005982 2.6e-18 96.7 130 49.2
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 4.4e-18 95.9 148 43.2
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 4.4e-18 95.9 164 39.6
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 1.7e-17 94.0 151 39.7
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 1.7e-17 94.0 163 39.9
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 2.9e-17 93.2 184 36.4
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 2.9e-17 93.2 182 36.8
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 3.7e-17 92.8 180 33.9
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 6.4e-17 92.0 208 34.6
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 3.2e-16 89.7 191 34.0
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 3.2e-16 89.7 193 35.2
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 5.4e-16 89.0 147 38.1
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 7.1e-16 88.6 188 34.6
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 7.1e-16 88.6 205 34.6
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 1.2e-15 87.8 180 37.2
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 2.1e-15 87.0 175 33.1
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 2.1e-15 87.0 181 35.9
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 3.5e-15 86.3 185 36.2
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 1.0e-14 84.7 148 39.2
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 2.3e-14 83.6 174 38.5
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 2.3e-14 83.6 174 38.5
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 8.6e-14 81.6 180 32.8
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 1.5e-13 80.9 166 35.5
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 5.6e-13 79.0 179 36.3
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 7.3e-13 78.6 160 33.8
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 9.5e-13 78.2 165 33.3
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 1.2e-12 77.8 191 31.4
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 1.6e-12 77.4 104 42.3
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 1.6e-12 77.4 104 42.3
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 6.2e-12 75.5 132 37.1
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.1e-11 74.7 160 31.9
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 3.1e-11 73.2 188 33.5
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 3.1e-11 73.2 103 39.8
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 3.1e-11 73.2 103 39.8
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 3.1e-11 73.2 175 34.9
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 5.2e-11 72.4 138 34.8
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 8.9e-11 71.6 193 32.1
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 2.0e-10 70.5 195 29.2
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 2.0e-10 70.5 107 41.1
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 2.6e-10 70.1 180 32.2
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 3.4e-10 69.7 103 40.8
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 4.4e-10 69.3 177 31.6
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 5.8e-10 68.9 105 40.0
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 7.6e-10 68.6 199 34.2
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 1.3e-09 67.8 110 40.0
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 1.7e-09 67.4 181 30.9
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 1.7e-09 67.4 110 39.1
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 1.7e-09 67.4 175 32.0
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 1.7e-09 67.4 175 32.0
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 1.7e-09 67.4 177 31.6
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 1.7e-09 67.4 175 32.0
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 1.7e-09 67.4 175 32.0
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 2.2e-09 67.0 243 28.4
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 2.2e-09 67.0 112 39.3
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 2.9e-09 66.6 174 32.2
ECA248G2125 Erigeron canadensis HOM05D007266 ORTHO05D005982 3.7e-09 66.2 114 36.8
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 3.7e-09 66.2 214 29.9
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 4.9e-09 65.9 110 36.4
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 6.4e-09 65.5 111 36.0
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 8.4e-09 65.1 112 37.5
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 1.1e-08 64.7 175 30.9
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 1.1e-08 64.7 180 31.7
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 3.2e-08 63.2 114 37.7
TWI23G0811 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 3.2e-08 63.2 151 33.1
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 7.1e-08 62.0 148 32.4
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 9.2e-08 61.6 111 33.3
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 9.2e-08 61.6 111 33.3
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 1.2e-07 61.2 218 28.9
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 2.1e-07 60.5 182 28.0
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 2.7e-07 60.1 102 41.2
Gohir.A04G113200 Gossypium hirsutum HOM05D003662 ORTHO05D001824 2.7e-07 60.1 133 32.3
Gorai.012G141800 Gossypium raimondii HOM05D003662 ORTHO05D001824 2.7e-07 60.1 133 32.3
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 2.7e-07 60.1 181 28.7
SGA_v2.0_scaffold332G48962 Striga asiatica HOM05D003662 ORTHO05D001824 2.7e-07 60.1 158 27.2
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 3.5e-07 59.7 86 43.0
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 4.6e-07 59.3 93 35.5
Gohir.D04G154500 Gossypium hirsutum HOM05D003662 ORTHO05D001824 6.0e-07 58.9 133 32.3
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 7.8e-07 58.5 189 27.0
CSS0041823 Camellia sinensis var. sinensis HOM05D007266 ORTHO05D005982 7.8e-07 58.5 81 50.6
Manes.14G166300 Manihot esculenta HOM05D003662 ORTHO05D001824 7.8e-07 58.5 149 31.5
MELO3C019019.2 Cucumis melo HOM05D003662 ORTHO05D001824 1.0e-06 58.2 96 33.3
Sopen04g004230 Solanum pennellii HOM05D003662 ORTHO05D001824 1.0e-06 58.2 116 34.5
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 1.3e-06 57.8 189 27.0
Oeu007958.1 Olea europaea HOM05D003662 ORTHO05D001824 1.3e-06 57.8 103 34.0
Solyc04g009050.4 Solanum lycopersicum HOM05D003662 ORTHO05D001824 1.3e-06 57.8 116 33.6
EL10Ac2g02826 Beta vulgaris HOM05D004414 ORTHO05D001824 1.7e-06 57.4 135 32.6
CANSAT56G3557 Cannabis sativa HOM05D004414 ORTHO05D001824 1.7e-06 57.4 103 36.9
Duzib248G0964 Durio zibethinus HOM05D003662 ORTHO05D001824 1.7e-06 57.4 129 31.8
PGSC0003DMG400011508 Solanum tuberosum HOM05D003662 ORTHO05D001824 1.7e-06 57.4 116 32.8
MSTRG.27792 Avicennia marina HOM05D003662 ORTHO05D001824 2.3e-06 57.0 141 35.5
Duzib052G1087 Durio zibethinus HOM05D003662 ORTHO05D001824 2.3e-06 57.0 134 34.3
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 3.0e-06 56.6 189 26.5
PSO447G0309 Papaver somniferum HOM05D003662 ORTHO05D001824 3.0e-06 56.6 135 31.1
Nitab4.5_0003858g0070 Nicotiana tabacum HOM05D003662 ORTHO05D001824 3.9e-06 56.2 116 33.6
AUR62026844 Chenopodium quinoa HOM05D004414 ORTHO05D001824 5.1e-06 55.8 130 30.0
Glyma.08G179400 Glycine max HOM05D003662 ORTHO05D001824 5.1e-06 55.8 109 30.3
MBI13_g09214_MAGBIO Magnolia biondii HOM05D007266 ORTHO05D005982 5.1e-06 55.8 152 25.0
CSS0012064 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 6.6e-06 55.5 147 35.4
AUR62037207 Chenopodium quinoa HOM05D004414 ORTHO05D001824 6.6e-06 55.5 132 30.3
CsaV3_4G009390 Cucumis sativus L. HOM05D003662 ORTHO05D001824 6.6e-06 55.5 96 31.2
MD02G1290900 Malus domestica HOM05D004414 ORTHO05D001824 6.6e-06 55.5 137 27.7
Nitab4.5_0003174g0040 Nicotiana tabacum HOM05D003662 ORTHO05D001824 8.6e-06 55.1 116 33.6
RcHm_v2.0_Chr1g0321761 Rosa chinensis HOM05D004414 ORTHO05D001824 8.6e-06 55.1 163 29.4


User provided reference genes

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