Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G187601 Populus trichocarpa HOM05D001467 ORTHO05D001447 2.2e-48 195.3 96 100.0
Sabra01G0026100 Salix brachista HOM05D001467 ORTHO05D001447 2.1e-19 99.0 56 80.4
GSVIVG01016062001 Vitis vinifera HOM05D001467 ORTHO05D001447 1.4e-18 96.3 56 78.6
Atru.chr1.2752 Acer truncatum HOM05D001467 ORTHO05D001447 2.3e-18 95.5 56 75.0
Potri.001G037300 Populus trichocarpa HOM05D001467 ORTHO05D001447 4.0e-18 94.7 56 76.8
VMungo1080G1820 Vigna mungo HOM05D001467 ORTHO05D001447 6.8e-18 94.0 60 71.7
Ciclev10025695m.g Citrus clementina HOM05D001467 ORTHO05D001447 2.0e-17 92.4 56 75.0
TWI75G1879 Tripterygium wilfordii HOM05D001467 ORTHO05D001447 2.0e-17 92.4 56 75.0
CANSAT64G0106 Cannabis sativa HOM05D001467 ORTHO05D001447 3.4e-17 91.7 56 76.8
ClCG09G003540 Citrullus lanatus HOM05D001467 ORTHO05D001447 3.4e-17 91.7 56 73.2
MELO3C023491.2 Cucumis melo HOM05D001467 ORTHO05D001447 3.4e-17 91.7 56 73.2
CsaV3_7G031660 Cucumis sativus L. HOM05D001467 ORTHO05D001447 4.4e-17 91.3 56 73.2
Glyma.13G371900 Glycine max HOM05D001467 ORTHO05D001447 4.4e-17 91.3 56 73.2
Rhsim12G0182900 Rhododendron simsii HOM05D001467 ORTHO05D001447 4.4e-17 91.3 56 71.4
Phvul.005G184300 Phaseolus vulgaris HOM05D001467 ORTHO05D001447 7.6e-17 90.5 56 69.6
Eucgr.J03141 Eucalyptus grandis HOM05D001467 ORTHO05D001447 9.9e-17 90.1 56 73.2
RcHm_v2.0_Chr2g0131521 Rosa chinensis HOM05D001467 ORTHO05D001447 9.9e-17 90.1 56 69.6
Duzib160G0460 Durio zibethinus HOM05D001467 ORTHO05D001447 1.3e-16 89.7 56 69.6
MD09G1230800 Malus domestica HOM05D001467 ORTHO05D001447 1.3e-16 89.7 56 73.2
Lj3g0001514 Lotus japonicus HOM05D001467 ORTHO05D001447 1.7e-16 89.4 56 69.6
Lalb_Chr24g0392761 Lupinus albus HOM05D001467 ORTHO05D001447 1.7e-16 89.4 56 69.6
Dinv23256 Davidia involucrata HOM05D001467 ORTHO05D001447 2.2e-16 89.0 56 71.4
Actinidia36855 Actinidia chinensis HOM05D001467 ORTHO05D001447 2.9e-16 88.6 56 71.4
COL.COLO4_30894 Corchorus olitorius HOM05D001467 ORTHO05D001447 2.9e-16 88.6 56 69.6
arahy.Tifrunner.gnm1.ann1.8C6B4V Arachis hypogaea HOM05D001467 ORTHO05D001447 4.9e-16 87.8 56 66.1
EL10Ac8g19451 Beta vulgaris HOM05D001467 ORTHO05D001447 4.9e-16 87.8 54 74.1
ECA246G3093 Erigeron canadensis HOM05D001467 ORTHO05D001214 4.9e-16 87.8 72 65.3
Gorai.009G149200 Gossypium raimondii HOM05D001467 ORTHO05D001447 4.9e-16 87.8 56 66.1
Thecc.06G132800 Theobroma cacao HOM05D001467 ORTHO05D001447 4.9e-16 87.8 56 69.6
FvH4_6g27970 Fragaria vesca HOM05D001467 ORTHO05D001447 6.4e-16 87.4 56 69.6
FAN14G5604 Fragaria x ananassa HOM05D001467 ORTHO05D001447 6.4e-16 87.4 56 69.6
TPR.G27585 Trifolium pratense HOM05D001467 ORTHO05D001447 8.3e-16 87.0 60 66.7
Cfa004165 Carpinus fangiana HOM05D001467 ORTHO05D000218 1.1e-15 86.7 72 58.3
Manes.11G071500 Manihot esculenta HOM05D001467 ORTHO05D001447 1.4e-15 86.3 72 61.1
Sed0024190 Sechium edule HOM05D001467 ORTHO05D001447 1.4e-15 86.3 56 67.9
TAR383G1091 Trochodendron aralioides HOM05D001467 ORTHO05D001447 1.4e-15 86.3 56 67.9
Cc04_g05490 Coffea canephora HOM05D001467 ORTHO05D001447 1.9e-15 85.9 56 67.9
CiPaw.02G024200 Carya illinoinensis HOM05D001467 ORTHO05D001447 2.4e-15 85.5 56 64.3
Gohir.A05G142900 Gossypium hirsutum HOM05D001467 ORTHO05D001447 2.4e-15 85.5 56 64.3
Haze_15247 Corylus avellana HOM05D001467 ORTHO05D001447 3.2e-15 85.1 56 67.9
HanXRQChr08g0235911 Helianthus annuus HOM05D001467 ORTHO05D001447 3.2e-15 85.1 72 61.1
Lj9C489T7 Lonicera japonica HOM05D001467 ORTHO05D001447 3.2e-15 85.1 56 69.6
Prupe.3G107000 Prunus persica HOM05D001467 ORTHO05D001447 3.2e-15 85.1 56 66.1
Medtr2g105480 Medicago truncatula HOM05D001467 ORTHO05D001447 4.1e-15 84.7 56 66.1
Aqoxy7G02957 Aquilegia oxysepala HOM05D001467 ORTHO05D001447 5.4e-15 84.3 56 69.6
FAN05G1198 Fragaria x ananassa HOM05D001467 ORTHO05D001447 5.4e-15 84.3 56 66.1
FAN09G2518 Fragaria x ananassa HOM05D001467 ORTHO05D001447 5.4e-15 84.3 56 66.1
Peaxi162Scf00314g00937 Petunia axillaris HOM05D001467 ORTHO05D001447 5.4e-15 84.3 56 66.1
SalBow7G3825 Salvia bowleyana HOM05D001467 ORTHO05D001447 5.4e-15 84.3 56 67.9
Psat5g307720 Pisum sativum HOM05D001467 ORTHO05D001447 7.1e-15 84.0 56 66.1
MSTRG.22831 Avicennia marina HOM05D001467 ORTHO05D001447 9.2e-15 83.6 56 67.9
CARHR066080 Cardamine hirsuta HOM05D001467 ORTHO05D001447 9.2e-15 83.6 56 69.6
Actinidia08925 Actinidia chinensis HOM05D008232 ORTHO05D010390 2.1e-14 82.4 55 69.1
MBI16_g44475_MAGBIO Magnolia biondii HOM05D001467 ORTHO05D001447 2.1e-14 82.4 54 68.5
SGA_v2.0_scaffold5G02826 Striga asiatica HOM05D001467 ORTHO05D001447 3.5e-14 81.6 56 66.1
Sp5g28070 Schrenkiella parvula HOM05D001467 ORTHO05D001447 4.6e-14 81.3 56 66.1
THA.LOC104813943 Tarenaya hassleriana HOM05D001467 ORTHO05D001447 6.0e-14 80.9 56 64.3
Aa31LG4G3380 Aethionema arabicum HOM05D001467 ORTHO05D001447 7.8e-14 80.5 52 69.2
CDE05G3594 Ceratophyllum demersum HOM05D001467 ORTHO05D001447 7.8e-14 80.5 56 64.3
Thhalv10018573m.g Eutrema salsugineum HOM05D001467 ORTHO05D001447 1.0e-13 80.1 56 67.9
PSO063G0476 Papaver somniferum HOM05D001467 ORTHO05D001447 1.0e-13 80.1 56 67.9
Nitab4.5_0007293g0030 Nicotiana tabacum HOM05D001467 ORTHO05D001447 1.3e-13 79.7 56 60.7
PSO170G6584 Papaver somniferum HOM05D001467 ORTHO05D001447 1.3e-13 79.7 56 66.1
C06p47300 Brassica napus HOM05D001467 ORTHO05D001447 2.3e-13 79.0 56 64.3
BolC6t39769H Brassica oleracea HOM05D001467 ORTHO05D001447 2.3e-13 79.0 56 64.3
BraA07t31460Z Brassica rapa HOM05D001467 ORTHO05D001447 2.3e-13 79.0 56 64.3
AUR62022403 Chenopodium quinoa HOM05D001467 ORTHO05D001447 2.3e-13 79.0 56 60.7
A07p39090 Brassica napus HOM05D001467 ORTHO05D001447 3.0e-13 78.6 56 64.3
Carub.0002s1988 Capsella rubella HOM05D001467 ORTHO05D001447 3.0e-13 78.6 56 64.3
AL2G32860 Arabidopsis lyrata HOM05D001467 ORTHO05D001447 3.9e-13 78.2 56 64.3
Migut.I00643 Erythranthe guttata HOM05D001467 ORTHO05D001447 3.9e-13 78.2 56 62.5
Lsat_1_v5_gn_5_9161 Lactuca sativa HOM05D001467 ORTHO05D001447 3.9e-13 78.2 56 64.3
AT1G73110 Arabidopsis thaliana HOM05D001467 ORTHO05D001447 5.1e-13 77.8 56 64.3
DCAR_025616 Daucus carota HOM05D001467 ORTHO05D001447 8.6e-13 77.0 56 60.7
Sopen03g036770 Solanum pennellii HOM05D001467 ORTHO05D001447 1.5e-12 76.3 56 60.7
PGSC0003DMG400014221 Solanum tuberosum HOM05D001467 ORTHO05D001447 2.5e-12 75.5 56 60.7
HPP92_010777 Vanilla planifolia HOM05D001467 ORTHO05D001447 7.3e-12 73.9 56 60.7
CAN.G1008.24 Capsicum annuum HOM05D001467 ORTHO05D001447 4.7e-11 71.2 56 57.1
Zm00001eb067660 Zea mays HOM05D001467 ORTHO05D001447 4.7e-11 71.2 56 53.6
ATR0580G322 Amborella trichopoda HOM05D001467 ORTHO05D001447 8.1e-11 70.5 56 57.1
CSS0033885 Camellia sinensis var. sinensis HOM05D001467 ORTHO05D001447 1.8e-10 69.3 41 73.2
Os04g0658300 Oryza sativa ssp. japonica HOM05D001467 ORTHO05D001447 6.8e-10 67.4 56 51.8
Mapoly0031s0065 Marchantia polymorpha HOM05D001467 ORTHO05D001447 2.9e-08 62.0 51 49.0
PGR031G3156 Punica granatum HOM05D001467 ORTHO05D001447 4.2e-07 58.2 35 65.7
Cpa.g.sc710.3 Carica papaya HOM05D001467 ORTHO05D001447 3.5e-06 55.1 31 77.4


User provided reference genes

Program Settings