Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1558.1 787 100.0
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1555.0 787 99.7
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1546.9 787 99.2
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1443.7 781 92.8
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1307.4 771 83.0
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1274.2 769 80.6
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1272.3 769 80.5
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1272.3 769 80.5
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1271.9 772 80.7
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1268.1 772 79.9
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1263.4 769 80.4
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1261.9 769 80.8
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1257.7 772 79.5
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1254.6 772 79.4
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1243.0 806 76.6
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1241.5 768 79.2
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1239.6 757 80.8
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1238.4 810 76.2
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1236.9 773 78.0
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1236.5 769 77.8
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1236.5 811 74.5
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1236.1 769 78.9
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1232.2 768 78.4
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1231.9 771 78.1
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1231.5 774 77.8
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1231.1 768 78.5
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1230.7 768 78.6
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1229.5 773 77.5
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1227.2 771 78.6
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1224.5 776 77.2
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1224.2 768 77.5
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1218.0 772 76.9
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1216.4 771 76.8
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1214.5 771 77.0
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1213.7 754 79.0
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1211.1 769 77.1
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1209.5 765 77.1
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1208.0 771 75.4
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1207.6 771 76.7
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1202.6 765 76.7
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1201.4 763 76.3
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1199.9 765 76.3
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1198.3 758 78.4
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1198.0 763 75.6
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1196.0 765 76.3
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1196.0 768 75.5
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1194.1 756 77.9
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1194.1 771 75.9
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1193.7 763 76.0
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 0.0e+00 1192.2 863 70.8
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1191.4 762 75.9
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1187.6 771 75.6
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1187.2 763 75.6
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1187.2 752 76.6
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1186.0 762 75.6
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1184.1 771 74.8
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1184.1 763 75.5
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1182.2 768 75.3
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1182.2 770 75.5
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1179.9 769 75.2
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 0.0e+00 1179.5 765 75.9
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1178.3 768 75.3
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1175.2 768 74.7
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1174.5 768 75.0
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1174.1 763 75.0
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1172.5 768 75.5
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1172.5 768 74.6
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1164.8 763 74.3
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1164.8 762 74.5
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 0.0e+00 1163.7 761 75.4
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 0.0e+00 1160.6 769 74.3
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1159.4 768 74.1
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1157.5 768 74.7
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1151.3 768 72.9
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 0.0e+00 1147.5 779 73.2
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1138.3 772 72.2
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1133.2 770 71.7
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1130.9 768 72.3
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1121.3 770 71.9
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1119.8 770 71.7
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 0.0e+00 1118.6 771 71.1
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1117.8 773 71.7
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1116.3 772 71.1
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1110.9 775 71.1
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1106.7 747 72.3
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1090.5 780 69.9
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1089.3 675 77.8
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 0.0e+00 1087.8 734 74.7
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1087.4 765 70.8
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 0.0e+00 1081.2 699 76.1
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 5.0e-308 1060.8 768 71.0
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 5.0e-308 1060.8 710 73.9
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 9.4e-307 1056.6 690 75.9
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 6.1e-306 1053.9 668 77.5
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 1.7e-303 1045.8 756 69.6
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 2.5e-291 1005.4 742 67.7
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 7.2e-291 1003.8 767 65.6
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 2.0e-288 995.7 769 64.8
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 2.5e-283 978.8 751 67.0
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 5.5e-283 977.6 743 64.9
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 2.1e-282 975.7 766 64.5
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 5.2e-281 971.1 768 61.7
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.1e-275 953.4 632 76.1
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 4.7e-274 948.0 659 72.8
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 1.8e-273 946.0 780 64.1
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 3.4e-264 915.2 529 83.7
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 3.2e-254 882.1 700 63.0
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 9.9e-248 860.5 663 65.8
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 7.3e-243 844.3 560 73.0
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 7.3e-243 844.3 645 65.3
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 3.6e-234 815.5 508 77.6
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 8.4e-231 804.3 754 57.8
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 2.4e-193 679.9 442 74.9
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 2.6e-192 676.4 441 75.7
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.6e-152 544.3 606 51.5
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 1.6e-152 544.3 348 74.7
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 5.0e-151 539.3 370 73.2
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 4.7e-125 453.0 274 81.8
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.3e-119 434.1 362 58.8
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 2.2e-106 391.0 248 73.0
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 8.4e-98 362.5 250 70.0
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 1.1e-78 298.9 354 48.0
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 5.7e-78 296.6 266 59.4
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 1.4e-76 292.0 260 64.2
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 2.0e-75 288.1 183 73.2
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 7.4e-70 269.6 252 57.5
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.4e-68 265.4 155 80.0
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.9e-65 255.0 210 65.2
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 3.0e-63 247.7 137 82.5
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 3.7e-61 240.7 229 53.7
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 9.1e-60 236.1 137 80.3
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-46 192.6 206 51.9
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 4.4e-46 190.7 149 65.8
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 5.7e-46 190.3 119 80.7
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 5.7e-46 190.3 107 83.2
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.2e-45 188.3 105 80.0
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 3.2e-44 184.5 104 82.7
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 9.2e-44 183.0 151 58.9
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 9.2e-44 183.0 104 80.8
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 5.6e-41 173.7 107 73.8
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.6e-40 172.2 116 71.6
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.5e-38 165.6 91 82.4
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 7.0e-36 156.8 87 81.6
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 2.3e-34 151.8 85 81.2
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 6.6e-34 150.2 94 78.7
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 1.1e-33 149.4 96 71.9
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.3e-31 141.7 79 79.7
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.5e-30 139.0 97 71.1
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.5e-30 139.0 97 71.1
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.4e-30 137.9 97 70.1
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 7.5e-30 136.7 83 77.1
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 2.9e-29 134.8 105 66.7
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.2e-28 131.3 79 73.4
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.6e-24 119.0 214 38.3
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 4.7e-24 117.5 72 73.6
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.2e-22 112.8 214 37.4
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.0e-22 112.1 74 70.3
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 3.7e-21 107.8 92 62.0
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 7.8e-19 100.1 162 38.9
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 1.2e-14 86.3 77 55.8
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.2e-12 77.8 51 72.5
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 5.4e-12 77.4 45 73.3
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 4.6e-11 74.3 176 33.0
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 6.6e-10 70.5 37 75.7
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 1.9e-09 68.9 56 66.1
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 5.3e-07 60.8 44 56.8
MD00G1188100 Malus domestica HOM05D004228 ORTHO05D043558 1.5e-06 59.3 29 82.8
C03p40290 Brassica napus HOM05D003800 ORTHO05D004549 7.6e-06 57.0 144 33.3
BolC3t16294H Brassica oleracea HOM05D003800 ORTHO05D004549 7.6e-06 57.0 144 33.3
arahy.Tifrunner.gnm1.ann1.W3R70Z Arachis hypogaea HOM05D004228 ORTHO05D005137 9.9e-06 56.6 50 58.0


User provided reference genes

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