Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.2e-174 615.5 310 100.0
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.0e-172 609.0 310 99.0
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 1.5e-167 592.8 317 95.6
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 9.2e-157 557.0 312 90.1
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 5.8e-151 537.7 270 98.5
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 4.9e-150 534.6 314 86.0
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 8.3e-150 533.9 312 87.8
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 2.7e-140 502.3 311 80.4
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 3.5e-140 501.9 311 80.7
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 7.8e-140 500.7 281 86.8
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 7.8e-140 500.7 277 87.0
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 1.7e-139 499.6 273 88.3
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 3.3e-138 495.4 278 85.6
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 2.1e-137 492.7 313 79.2
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 8.1e-137 490.7 292 83.6
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 8.1e-137 490.7 312 77.9
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 8.1e-137 490.7 308 78.6
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 1.8e-136 489.6 304 78.9
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 2.4e-136 489.2 304 79.6
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 5.2e-136 488.0 270 88.1
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 5.2e-136 488.0 261 88.9
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 1.2e-135 486.9 304 78.9
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 2.6e-135 485.7 271 85.2
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 2.6e-135 485.7 285 81.8
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 3.4e-135 485.3 273 85.3
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 4.4e-135 485.0 272 84.9
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 5.8e-135 484.6 272 85.7
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 5.8e-135 484.6 285 81.4
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 7.6e-135 484.2 269 86.6
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 7.6e-135 484.2 311 78.1
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 9.9e-135 483.8 272 84.6
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 1.7e-134 483.0 269 86.2
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 4.9e-134 481.5 269 85.9
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 6.4e-134 481.1 293 79.9
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 8.4e-134 480.7 297 79.1
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 8.4e-134 480.7 262 87.4
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 1.1e-133 480.3 255 89.4
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 1.1e-133 480.3 269 85.5
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 2.4e-133 479.2 305 79.3
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 4.2e-133 478.4 262 85.9
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 7.1e-133 477.6 276 84.8
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 7.1e-133 477.6 269 84.4
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 9.3e-133 477.2 262 85.9
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 9.3e-133 477.2 255 89.0
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 2.7e-132 475.7 294 81.6
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 3.5e-132 475.3 298 78.5
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 3.5e-132 475.3 272 84.6
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 3.5e-132 475.3 272 84.6
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 6.0e-132 474.6 265 86.0
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 6.0e-132 474.6 307 78.5
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 7.8e-132 474.2 254 89.4
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 1.0e-131 473.8 270 84.4
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 1.0e-131 473.8 270 84.4
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 1.3e-131 473.4 274 84.3
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 1.3e-131 473.4 270 84.1
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 1.3e-131 473.4 270 84.1
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 1.3e-131 473.4 320 75.3
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 1.3e-131 473.4 271 83.8
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 6.6e-131 471.1 270 83.7
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 8.7e-131 470.7 301 77.7
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 1.1e-130 470.3 284 82.0
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 3.3e-130 468.8 306 77.1
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 5.6e-130 468.0 306 76.8
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 7.3e-130 467.6 306 76.8
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 9.6e-130 467.2 310 76.5
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 9.6e-130 467.2 307 75.9
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 1.6e-129 466.5 251 88.8
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 2.1e-129 466.1 270 83.3
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 1.1e-128 463.8 254 87.4
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 1.1e-128 463.8 298 77.2
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 1.4e-128 463.4 281 79.4
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 1.8e-128 463.0 295 76.6
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 1.8e-128 463.0 243 91.4
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 9.0e-128 460.7 306 74.2
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 9.9e-127 457.2 288 77.8
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 1.3e-126 456.8 270 81.1
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 2.2e-126 456.1 243 88.5
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 2.2e-126 456.1 243 88.5
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 4.9e-126 454.9 281 79.0
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 1.1e-125 453.8 267 80.1
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 2.4e-125 452.6 286 78.0
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 3.2e-125 452.2 276 77.9
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 7.1e-125 451.1 300 76.7
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 1.6e-124 449.9 305 74.8
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 2.1e-124 449.5 305 74.8
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 2.1e-124 449.5 289 75.1
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 2.7e-124 449.1 270 81.9
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 6.0e-124 448.0 276 78.3
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 1.0e-123 447.2 282 77.0
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 6.7e-123 444.5 271 77.9
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 1.1e-122 443.7 262 79.8
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 7.4e-122 441.0 243 86.4
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 1.1e-120 437.2 252 83.3
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 6.9e-120 434.5 294 76.2
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 7.6e-119 431.0 271 77.5
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 1.9e-114 416.4 276 75.7
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 9.3e-109 397.5 219 88.6
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 2.7e-108 396.0 270 71.1
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 1.4e-104 383.6 276 69.2
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 6.9e-104 381.3 259 68.7
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 4.5e-103 378.6 260 74.2
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 8.5e-102 374.4 278 64.7
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 2.5e-101 372.9 264 68.2
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 1.8e-99 366.7 199 91.0
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 2.5e-98 362.8 192 90.1
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 2.5e-98 362.8 245 76.3
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 2.8e-97 359.4 190 90.0
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 6.5e-94 348.2 312 57.7
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 1.2e-92 344.0 192 84.4
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 6.1e-92 341.7 192 83.9
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 1.8e-91 340.1 190 84.2
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 7.7e-87 324.7 265 61.1
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 1.3e-86 323.9 188 84.0
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.2e-86 323.2 177 85.9
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 1.6e-84 317.0 231 68.4
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 4.7e-84 315.5 264 60.6
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.7e-81 307.0 243 61.3
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 3.1e-80 302.8 210 75.2
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.3e-67 260.0 256 53.9
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 2.7e-63 246.5 188 66.5
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 7.7e-63 245.0 260 54.6
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 3.3e-61 239.6 142 79.6
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.2e-36 157.9 129 61.2
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 1.6e-36 157.5 85 84.7
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 6.2e-36 155.6 281 37.4
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.2e-23 114.8 319 28.8
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 1.3e-22 111.3 65 80.0
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 3.9e-22 109.8 72 69.4
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 5.1e-22 109.4 287 33.8
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 2.9e-17 93.6 104 57.7
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 7.3e-13 79.0 60 65.0
CARHR016590 Cardamine hirsuta HOM05D006171 ORTHO05D007294 7.9e-07 58.9 36 83.3


User provided reference genes

Program Settings